Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18700

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18695 and CSW01_18700 overlap by 1 nucleotidesCSW01_18700 and CSW01_18705 overlap by 4 nucleotidesCSW01_18705 and CSW01_18710 are separated by 10 nucleotides CSW01_18695: CSW01_18695 - energy transducer TonB, at 863,877 to 864,626 _18695 CSW01_18700: CSW01_18700 - biopolymer transporter exbB1, at 864,626 to 865,312 _18700 CSW01_18705: CSW01_18705 - biopolymer transporter exbD1, at 865,309 to 865,725 _18705 CSW01_18710: CSW01_18710 - hemin ABC transporter substrate-binding protein, at 865,736 to 866,569 _18710 Position (kb) 864 865 866Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 863.733 kb on - strandat 863.891 kb on + strandat 863.895 kb on + strandat 863.917 kb on + strandat 863.976 kb on + strand, within CSW01_18695at 864.136 kb on + strand, within CSW01_18695at 864.143 kb on + strand, within CSW01_18695at 864.206 kb on + strand, within CSW01_18695at 864.294 kb on - strand, within CSW01_18695at 864.316 kb on - strand, within CSW01_18695at 864.380 kb on + strand, within CSW01_18695at 864.427 kb on + strand, within CSW01_18695at 864.532 kb on + strand, within CSW01_18695at 864.540 kb on - strand, within CSW01_18695at 864.699 kb on + strand, within CSW01_18700at 864.707 kb on - strand, within CSW01_18700at 864.707 kb on - strand, within CSW01_18700at 864.741 kb on + strand, within CSW01_18700at 864.751 kb on + strand, within CSW01_18700at 864.843 kb on + strand, within CSW01_18700at 864.856 kb on - strand, within CSW01_18700at 864.861 kb on - strand, within CSW01_18700at 864.861 kb on - strand, within CSW01_18700at 864.983 kb on + strand, within CSW01_18700at 865.017 kb on - strand, within CSW01_18700at 865.022 kb on - strand, within CSW01_18700at 865.047 kb on - strand, within CSW01_18700at 865.068 kb on + strand, within CSW01_18700at 865.103 kb on - strand, within CSW01_18700at 865.116 kb on + strand, within CSW01_18700at 865.200 kb on + strand, within CSW01_18700at 865.212 kb on - strand, within CSW01_18700at 865.228 kb on + strand, within CSW01_18700at 865.229 kb on - strand, within CSW01_18700at 865.229 kb on - strand, within CSW01_18700at 865.242 kb on + strand, within CSW01_18700at 865.242 kb on + strand, within CSW01_18700at 865.248 kb on - strandat 865.356 kb on - strand, within CSW01_18705at 865.446 kb on + strand, within CSW01_18705at 865.536 kb on + strand, within CSW01_18705at 865.542 kb on + strand, within CSW01_18705at 865.550 kb on - strand, within CSW01_18705at 865.550 kb on - strand, within CSW01_18705at 865.550 kb on - strand, within CSW01_18705at 865.556 kb on + strand, within CSW01_18705at 865.564 kb on - strand, within CSW01_18705at 865.571 kb on - strand, within CSW01_18705at 865.706 kb on - strandat 865.854 kb on + strand, within CSW01_18710at 865.854 kb on + strand, within CSW01_18710at 865.970 kb on - strand, within CSW01_18710at 866.080 kb on - strand, within CSW01_18710at 866.164 kb on + strand, within CSW01_18710at 866.172 kb on - strand, within CSW01_18710at 866.172 kb on - strand, within CSW01_18710at 866.287 kb on + strand, within CSW01_18710

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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863,733 - +0.0
863,891 + -0.7
863,895 + +1.2
863,917 + +0.9
863,976 + CSW01_18695 0.13 +0.2
864,136 + CSW01_18695 0.35 -2.5
864,143 + CSW01_18695 0.35 -1.3
864,206 + CSW01_18695 0.44 -1.9
864,294 - CSW01_18695 0.56 -2.5
864,316 - CSW01_18695 0.59 -1.9
864,380 + CSW01_18695 0.67 -0.9
864,427 + CSW01_18695 0.73 +0.6
864,532 + CSW01_18695 0.87 -3.0
864,540 - CSW01_18695 0.88 -2.3
864,699 + CSW01_18700 0.11 +0.7
864,707 - CSW01_18700 0.12 -2.2
864,707 - CSW01_18700 0.12 -2.0
864,741 + CSW01_18700 0.17 -1.5
864,751 + CSW01_18700 0.18 +0.7
864,843 + CSW01_18700 0.32 +0.1
864,856 - CSW01_18700 0.33 -0.9
864,861 - CSW01_18700 0.34 -1.1
864,861 - CSW01_18700 0.34 +0.5
864,983 + CSW01_18700 0.52 -1.3
865,017 - CSW01_18700 0.57 +1.1
865,022 - CSW01_18700 0.58 -1.6
865,047 - CSW01_18700 0.61 +0.8
865,068 + CSW01_18700 0.64 -2.3
865,103 - CSW01_18700 0.69 -0.3
865,116 + CSW01_18700 0.71 -2.0
865,200 + CSW01_18700 0.84 -2.0
865,212 - CSW01_18700 0.85 -0.6
865,228 + CSW01_18700 0.88 -2.3
865,229 - CSW01_18700 0.88 +1.2
865,229 - CSW01_18700 0.88 -1.0
865,242 + CSW01_18700 0.90 +0.8
865,242 + CSW01_18700 0.90 +0.1
865,248 - +0.9
865,356 - CSW01_18705 0.11 -2.1
865,446 + CSW01_18705 0.33 +1.8
865,536 + CSW01_18705 0.54 +0.2
865,542 + CSW01_18705 0.56 -1.6
865,550 - CSW01_18705 0.58 -0.9
865,550 - CSW01_18705 0.58 -3.4
865,550 - CSW01_18705 0.58 -2.1
865,556 + CSW01_18705 0.59 +2.5
865,564 - CSW01_18705 0.61 -0.4
865,571 - CSW01_18705 0.63 -1.6
865,706 - +0.7
865,854 + CSW01_18710 0.14 -0.9
865,854 + CSW01_18710 0.14 -1.2
865,970 - CSW01_18710 0.28 +1.6
866,080 - CSW01_18710 0.41 -0.5
866,164 + CSW01_18710 0.51 -1.3
866,172 - CSW01_18710 0.52 -1.4
866,172 - CSW01_18710 0.52 -0.9
866,287 + CSW01_18710 0.66 -0.2

Or see this region's nucleotide sequence