Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18655

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18645 and CSW01_18650 overlap by 7 nucleotidesCSW01_18650 and CSW01_18655 are separated by 32 nucleotidesCSW01_18655 and CSW01_18660 are separated by 135 nucleotides CSW01_18645: CSW01_18645 - MBL fold metallo-hydrolase, at 852,648 to 853,562 _18645 CSW01_18650: CSW01_18650 - DsbA family protein, at 853,556 to 854,185 _18650 CSW01_18655: CSW01_18655 - hypothetical protein, at 854,218 to 855,054 _18655 CSW01_18660: CSW01_18660 - glycerate kinase, at 855,190 to 856,323 _18660 Position (kb) 854 855 856Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 853.245 kb on + strand, within CSW01_18645at 853.283 kb on + strand, within CSW01_18645at 853.309 kb on - strand, within CSW01_18645at 853.311 kb on + strand, within CSW01_18645at 853.314 kb on - strand, within CSW01_18645at 853.459 kb on + strand, within CSW01_18645at 853.461 kb on + strand, within CSW01_18645at 853.557 kb on + strandat 853.590 kb on - strandat 853.652 kb on - strand, within CSW01_18650at 853.655 kb on + strand, within CSW01_18650at 853.663 kb on - strand, within CSW01_18650at 853.685 kb on + strand, within CSW01_18650at 853.703 kb on - strand, within CSW01_18650at 853.765 kb on - strand, within CSW01_18650at 853.834 kb on - strand, within CSW01_18650at 853.876 kb on + strand, within CSW01_18650at 853.900 kb on + strand, within CSW01_18650at 853.911 kb on + strand, within CSW01_18650at 853.911 kb on + strand, within CSW01_18650at 853.919 kb on - strand, within CSW01_18650at 853.919 kb on - strand, within CSW01_18650at 853.919 kb on - strand, within CSW01_18650at 854.035 kb on - strand, within CSW01_18650at 854.117 kb on - strand, within CSW01_18650at 854.117 kb on - strand, within CSW01_18650at 854.117 kb on - strand, within CSW01_18650at 854.117 kb on - strand, within CSW01_18650at 854.162 kb on + strandat 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.350 kb on + strand, within CSW01_18655at 854.382 kb on + strand, within CSW01_18655at 854.382 kb on + strand, within CSW01_18655at 854.387 kb on + strand, within CSW01_18655at 854.395 kb on - strand, within CSW01_18655at 854.413 kb on + strand, within CSW01_18655at 854.423 kb on + strand, within CSW01_18655at 854.453 kb on + strand, within CSW01_18655at 854.506 kb on + strand, within CSW01_18655at 854.514 kb on - strand, within CSW01_18655at 854.514 kb on - strand, within CSW01_18655at 854.521 kb on + strand, within CSW01_18655at 854.522 kb on + strand, within CSW01_18655at 854.530 kb on - strand, within CSW01_18655at 854.678 kb on + strand, within CSW01_18655at 854.926 kb on - strand, within CSW01_18655at 854.938 kb on - strand, within CSW01_18655at 855.028 kb on - strandat 855.028 kb on - strandat 855.119 kb on - strandat 855.241 kb on + strandat 855.321 kb on + strand, within CSW01_18660at 855.350 kb on - strand, within CSW01_18660at 855.375 kb on + strand, within CSW01_18660at 855.375 kb on + strand, within CSW01_18660at 855.383 kb on - strand, within CSW01_18660at 855.453 kb on - strand, within CSW01_18660at 855.508 kb on - strand, within CSW01_18660at 855.508 kb on - strand, within CSW01_18660at 855.510 kb on - strand, within CSW01_18660at 855.593 kb on - strand, within CSW01_18660at 855.603 kb on - strand, within CSW01_18660at 855.603 kb on - strand, within CSW01_18660at 855.705 kb on + strand, within CSW01_18660at 855.747 kb on - strand, within CSW01_18660at 855.771 kb on + strand, within CSW01_18660at 855.771 kb on + strand, within CSW01_18660at 855.771 kb on + strand, within CSW01_18660at 855.917 kb on + strand, within CSW01_18660at 855.965 kb on + strand, within CSW01_18660at 856.002 kb on + strand, within CSW01_18660at 856.002 kb on + strand, within CSW01_18660at 856.002 kb on + strand, within CSW01_18660at 856.002 kb on + strand, within CSW01_18660at 856.010 kb on - strand, within CSW01_18660at 856.010 kb on - strand, within CSW01_18660at 856.010 kb on - strand, within CSW01_18660at 856.010 kb on - strand, within CSW01_18660at 856.010 kb on - strand, within CSW01_18660at 856.030 kb on - strand, within CSW01_18660at 856.040 kb on + strand, within CSW01_18660

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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853,245 + CSW01_18645 0.65 +0.9
853,283 + CSW01_18645 0.69 -0.1
853,309 - CSW01_18645 0.72 -1.6
853,311 + CSW01_18645 0.72 +1.8
853,314 - CSW01_18645 0.73 -0.1
853,459 + CSW01_18645 0.89 -1.2
853,461 + CSW01_18645 0.89 -1.1
853,557 + -0.3
853,590 - +1.8
853,652 - CSW01_18650 0.15 -1.7
853,655 + CSW01_18650 0.16 -2.1
853,663 - CSW01_18650 0.17 -2.8
853,685 + CSW01_18650 0.20 +0.1
853,703 - CSW01_18650 0.23 +1.1
853,765 - CSW01_18650 0.33 +0.7
853,834 - CSW01_18650 0.44 +0.7
853,876 + CSW01_18650 0.51 -1.4
853,900 + CSW01_18650 0.55 -0.9
853,911 + CSW01_18650 0.56 +0.3
853,911 + CSW01_18650 0.56 +1.5
853,919 - CSW01_18650 0.58 +3.3
853,919 - CSW01_18650 0.58 -1.2
853,919 - CSW01_18650 0.58 +0.1
854,035 - CSW01_18650 0.76 -2.3
854,117 - CSW01_18650 0.89 -0.7
854,117 - CSW01_18650 0.89 -1.0
854,117 - CSW01_18650 0.89 -0.6
854,117 - CSW01_18650 0.89 -0.7
854,162 + +0.5
854,318 + CSW01_18655 0.12 +1.8
854,318 + CSW01_18655 0.12 +1.0
854,318 + CSW01_18655 0.12 +2.5
854,318 + CSW01_18655 0.12 +0.4
854,318 + CSW01_18655 0.12 +0.8
854,318 + CSW01_18655 0.12 -1.3
854,318 + CSW01_18655 0.12 +0.8
854,318 + CSW01_18655 0.12 +1.4
854,318 + CSW01_18655 0.12 +1.1
854,318 + CSW01_18655 0.12 +1.4
854,326 - CSW01_18655 0.13 -1.1
854,326 - CSW01_18655 0.13 +0.6
854,326 - CSW01_18655 0.13 -1.5
854,326 - CSW01_18655 0.13 +1.0
854,326 - CSW01_18655 0.13 +1.2
854,326 - CSW01_18655 0.13 -0.3
854,326 - CSW01_18655 0.13 +0.8
854,326 - CSW01_18655 0.13 +1.2
854,326 - CSW01_18655 0.13 +1.2
854,326 - CSW01_18655 0.13 -0.7
854,326 - CSW01_18655 0.13 -0.5
854,326 - CSW01_18655 0.13 -2.0
854,350 + CSW01_18655 0.16 -1.0
854,382 + CSW01_18655 0.20 +0.9
854,382 + CSW01_18655 0.20 -0.9
854,387 + CSW01_18655 0.20 -0.5
854,395 - CSW01_18655 0.21 +0.0
854,413 + CSW01_18655 0.23 +0.5
854,423 + CSW01_18655 0.24 -1.8
854,453 + CSW01_18655 0.28 +2.5
854,506 + CSW01_18655 0.34 -2.0
854,514 - CSW01_18655 0.35 -1.5
854,514 - CSW01_18655 0.35 -1.7
854,521 + CSW01_18655 0.36 +0.3
854,522 + CSW01_18655 0.36 +0.3
854,530 - CSW01_18655 0.37 +1.4
854,678 + CSW01_18655 0.55 +0.1
854,926 - CSW01_18655 0.85 -2.0
854,938 - CSW01_18655 0.86 -0.3
855,028 - -0.1
855,028 - -0.4
855,119 - -1.3
855,241 + -0.0
855,321 + CSW01_18660 0.12 +1.8
855,350 - CSW01_18660 0.14 +0.1
855,375 + CSW01_18660 0.16 +0.1
855,375 + CSW01_18660 0.16 -2.4
855,383 - CSW01_18660 0.17 -0.5
855,453 - CSW01_18660 0.23 -0.8
855,508 - CSW01_18660 0.28 +0.3
855,508 - CSW01_18660 0.28 +0.2
855,510 - CSW01_18660 0.28 +0.8
855,593 - CSW01_18660 0.36 +1.0
855,603 - CSW01_18660 0.36 -3.0
855,603 - CSW01_18660 0.36 -1.6
855,705 + CSW01_18660 0.45 -0.9
855,747 - CSW01_18660 0.49 +1.6
855,771 + CSW01_18660 0.51 -0.0
855,771 + CSW01_18660 0.51 -2.0
855,771 + CSW01_18660 0.51 -0.0
855,917 + CSW01_18660 0.64 +2.8
855,965 + CSW01_18660 0.68 +0.1
856,002 + CSW01_18660 0.72 +0.3
856,002 + CSW01_18660 0.72 -1.1
856,002 + CSW01_18660 0.72 +1.1
856,002 + CSW01_18660 0.72 -0.9
856,010 - CSW01_18660 0.72 +0.3
856,010 - CSW01_18660 0.72 +0.1
856,010 - CSW01_18660 0.72 -0.3
856,010 - CSW01_18660 0.72 -2.4
856,010 - CSW01_18660 0.72 -2.0
856,030 - CSW01_18660 0.74 -0.5
856,040 + CSW01_18660 0.75 +0.9

Or see this region's nucleotide sequence