Experiment: ICP1_phage_235.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18575 and CSW01_18580 overlap by 20 nucleotides CSW01_18580 and CSW01_18585 overlap by 23 nucleotides CSW01_18585 and CSW01_18590 are separated by 99 nucleotides
CSW01_18575: CSW01_18575 - amidohydrolase, at 838,495 to 838,644
_18575
CSW01_18580: CSW01_18580 - protein deglycase HchA, at 838,625 to 839,484
_18580
CSW01_18585: CSW01_18585 - LuxR family transcriptional regulator, at 839,462 to 840,223
_18585
CSW01_18590: CSW01_18590 - LysR family transcriptional regulator, at 840,323 to 841,261
_18590
Position (kb) 839
840
841 Strain fitness (log2 ratio) -2
-1
0
1
2 at 838.520 kb on + strand, within CSW01_18575 at 838.603 kb on + strand, within CSW01_18575 at 838.604 kb on + strand, within CSW01_18575 at 838.612 kb on - strand, within CSW01_18575 at 838.680 kb on - strand at 838.680 kb on - strand at 838.730 kb on + strand, within CSW01_18580 at 838.749 kb on + strand, within CSW01_18580 at 838.749 kb on + strand, within CSW01_18580 at 838.757 kb on - strand, within CSW01_18580 at 838.758 kb on - strand, within CSW01_18580 at 838.758 kb on - strand, within CSW01_18580 at 838.763 kb on - strand, within CSW01_18580 at 839.061 kb on - strand, within CSW01_18580 at 839.123 kb on + strand, within CSW01_18580 at 839.130 kb on + strand, within CSW01_18580 at 839.194 kb on + strand, within CSW01_18580 at 839.216 kb on + strand, within CSW01_18580 at 839.230 kb on - strand, within CSW01_18580 at 839.431 kb on + strand at 839.509 kb on - strand at 839.567 kb on + strand, within CSW01_18585 at 839.575 kb on - strand, within CSW01_18585 at 839.643 kb on - strand, within CSW01_18585 at 839.643 kb on - strand, within CSW01_18585 at 839.799 kb on + strand, within CSW01_18585 at 839.804 kb on + strand, within CSW01_18585 at 839.812 kb on - strand, within CSW01_18585 at 839.892 kb on - strand, within CSW01_18585 at 840.002 kb on + strand, within CSW01_18585 at 840.002 kb on + strand, within CSW01_18585 at 840.010 kb on - strand, within CSW01_18585 at 840.010 kb on - strand, within CSW01_18585 at 840.010 kb on - strand, within CSW01_18585 at 840.020 kb on - strand, within CSW01_18585 at 840.020 kb on - strand, within CSW01_18585 at 840.141 kb on + strand, within CSW01_18585 at 840.232 kb on + strand at 840.434 kb on - strand, within CSW01_18590 at 840.437 kb on - strand, within CSW01_18590 at 840.445 kb on + strand, within CSW01_18590 at 840.474 kb on + strand, within CSW01_18590 at 840.533 kb on - strand, within CSW01_18590 at 840.547 kb on - strand, within CSW01_18590 at 840.843 kb on + strand, within CSW01_18590 at 840.862 kb on + strand, within CSW01_18590 at 840.862 kb on + strand, within CSW01_18590 at 840.915 kb on - strand, within CSW01_18590 at 840.972 kb on + strand, within CSW01_18590 at 840.980 kb on - strand, within CSW01_18590 at 840.980 kb on - strand, within CSW01_18590 at 841.004 kb on - strand, within CSW01_18590 at 841.092 kb on - strand, within CSW01_18590
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1 remove 838,520 + CSW01_18575 0.17 -0.3 838,603 + CSW01_18575 0.72 +0.7 838,604 + CSW01_18575 0.73 +1.3 838,612 - CSW01_18575 0.78 +0.6 838,680 - -0.1 838,680 - -2.2 838,730 + CSW01_18580 0.12 +0.1 838,749 + CSW01_18580 0.14 +1.2 838,749 + CSW01_18580 0.14 -0.2 838,757 - CSW01_18580 0.15 +0.9 838,758 - CSW01_18580 0.15 -0.8 838,758 - CSW01_18580 0.15 -2.1 838,763 - CSW01_18580 0.16 -0.0 839,061 - CSW01_18580 0.51 -0.2 839,123 + CSW01_18580 0.58 -0.2 839,130 + CSW01_18580 0.59 -0.2 839,194 + CSW01_18580 0.66 -0.8 839,216 + CSW01_18580 0.69 -1.3 839,230 - CSW01_18580 0.70 +0.4 839,431 + -0.1 839,509 - +0.6 839,567 + CSW01_18585 0.14 +1.6 839,575 - CSW01_18585 0.15 -1.2 839,643 - CSW01_18585 0.24 +1.4 839,643 - CSW01_18585 0.24 +1.0 839,799 + CSW01_18585 0.44 -2.0 839,804 + CSW01_18585 0.45 +1.3 839,812 - CSW01_18585 0.46 -0.2 839,892 - CSW01_18585 0.56 +2.6 840,002 + CSW01_18585 0.71 -1.6 840,002 + CSW01_18585 0.71 -2.2 840,010 - CSW01_18585 0.72 +0.5 840,010 - CSW01_18585 0.72 -0.1 840,010 - CSW01_18585 0.72 +0.9 840,020 - CSW01_18585 0.73 +1.2 840,020 - CSW01_18585 0.73 +0.4 840,141 + CSW01_18585 0.89 +0.2 840,232 + +1.3 840,434 - CSW01_18590 0.12 -1.2 840,437 - CSW01_18590 0.12 -0.9 840,445 + CSW01_18590 0.13 -1.2 840,474 + CSW01_18590 0.16 +0.1 840,533 - CSW01_18590 0.22 -0.0 840,547 - CSW01_18590 0.24 +1.3 840,843 + CSW01_18590 0.55 -1.0 840,862 + CSW01_18590 0.57 -1.2 840,862 + CSW01_18590 0.57 -2.0 840,915 - CSW01_18590 0.63 +0.5 840,972 + CSW01_18590 0.69 -0.4 840,980 - CSW01_18590 0.70 +0.6 840,980 - CSW01_18590 0.70 -2.5 841,004 - CSW01_18590 0.73 -1.0 841,092 - CSW01_18590 0.82 +0.7
Or see this region's nucleotide sequence