Experiment: ICP1_phage_235.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17940 and CSW01_17945 are separated by 32 nucleotides CSW01_17945 and CSW01_17950 are separated by 24 nucleotides CSW01_17950 and CSW01_17955 are separated by 217 nucleotides CSW01_17955 and CSW01_17960 are separated by 174 nucleotides
CSW01_17940: CSW01_17940 - lipase, at 696,883 to 697,713
_17940
CSW01_17945: CSW01_17945 - tRNA-Cys, at 697,746 to 697,819
_17945
CSW01_17950: CSW01_17950 - tRNA-Leu, at 697,844 to 697,930
_17950
CSW01_17955: CSW01_17955 - lactoylglutathione lyase family protein, at 698,148 to 698,648
_17955
CSW01_17960: CSW01_17960 - LysR family transcriptional regulator, at 698,823 to 699,728
_17960
Position (kb) 698
699 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 697.164 kb on - strand, within CSW01_17940 at 697.215 kb on - strand, within CSW01_17940 at 697.318 kb on + strand, within CSW01_17940 at 697.424 kb on + strand, within CSW01_17940 at 697.454 kb on - strand, within CSW01_17940 at 697.504 kb on + strand, within CSW01_17940 at 697.504 kb on + strand, within CSW01_17940 at 697.828 kb on + strand at 697.832 kb on + strand at 697.851 kb on - strand at 697.968 kb on - strand at 698.114 kb on - strand at 698.167 kb on + strand at 698.175 kb on - strand at 698.175 kb on - strand at 698.185 kb on - strand at 698.278 kb on + strand, within CSW01_17955 at 698.489 kb on + strand, within CSW01_17955 at 698.502 kb on - strand, within CSW01_17955 at 698.524 kb on + strand, within CSW01_17955 at 698.524 kb on + strand, within CSW01_17955 at 698.567 kb on - strand, within CSW01_17955 at 698.580 kb on - strand, within CSW01_17955 at 698.580 kb on - strand, within CSW01_17955 at 698.636 kb on + strand at 698.644 kb on - strand at 698.678 kb on + strand at 698.697 kb on + strand at 698.705 kb on - strand at 698.720 kb on - strand at 698.720 kb on - strand at 698.768 kb on - strand at 698.839 kb on + strand at 698.869 kb on - strand at 699.084 kb on - strand, within CSW01_17960 at 699.100 kb on + strand, within CSW01_17960 at 699.112 kb on + strand, within CSW01_17960 at 699.120 kb on - strand, within CSW01_17960 at 699.169 kb on + strand, within CSW01_17960 at 699.169 kb on + strand, within CSW01_17960 at 699.169 kb on + strand, within CSW01_17960 at 699.170 kb on + strand, within CSW01_17960 at 699.177 kb on - strand, within CSW01_17960 at 699.177 kb on - strand, within CSW01_17960 at 699.177 kb on - strand, within CSW01_17960 at 699.184 kb on - strand, within CSW01_17960 at 699.259 kb on + strand, within CSW01_17960 at 699.302 kb on - strand, within CSW01_17960 at 699.324 kb on - strand, within CSW01_17960 at 699.324 kb on - strand, within CSW01_17960 at 699.376 kb on + strand, within CSW01_17960 at 699.395 kb on + strand, within CSW01_17960 at 699.403 kb on - strand, within CSW01_17960 at 699.464 kb on - strand, within CSW01_17960 at 699.464 kb on - strand, within CSW01_17960 at 699.531 kb on + strand, within CSW01_17960 at 699.531 kb on + strand, within CSW01_17960 at 699.532 kb on + strand, within CSW01_17960 at 699.539 kb on - strand, within CSW01_17960 at 699.540 kb on - strand, within CSW01_17960 at 699.559 kb on - strand, within CSW01_17960 at 699.640 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1 remove 697,164 - CSW01_17940 0.34 +1.9 697,215 - CSW01_17940 0.40 -2.1 697,318 + CSW01_17940 0.52 +0.5 697,424 + CSW01_17940 0.65 -0.8 697,454 - CSW01_17940 0.69 -1.7 697,504 + CSW01_17940 0.75 +1.1 697,504 + CSW01_17940 0.75 -1.2 697,828 + +0.8 697,832 + +0.5 697,851 - +0.3 697,968 - +0.6 698,114 - -1.4 698,167 + +0.3 698,175 - +0.4 698,175 - +1.3 698,185 - +1.5 698,278 + CSW01_17955 0.26 +0.9 698,489 + CSW01_17955 0.68 +0.5 698,502 - CSW01_17955 0.71 +0.3 698,524 + CSW01_17955 0.75 +0.3 698,524 + CSW01_17955 0.75 +1.5 698,567 - CSW01_17955 0.84 +0.2 698,580 - CSW01_17955 0.86 +0.3 698,580 - CSW01_17955 0.86 -0.1 698,636 + +0.4 698,644 - +2.8 698,678 + +0.1 698,697 + -4.8 698,705 - +0.7 698,720 - -0.2 698,720 - +0.2 698,768 - +0.5 698,839 + +0.6 698,869 - +0.0 699,084 - CSW01_17960 0.29 -1.8 699,100 + CSW01_17960 0.31 +0.3 699,112 + CSW01_17960 0.32 -1.2 699,120 - CSW01_17960 0.33 -0.2 699,169 + CSW01_17960 0.38 +0.9 699,169 + CSW01_17960 0.38 +1.4 699,169 + CSW01_17960 0.38 +1.4 699,170 + CSW01_17960 0.38 -0.8 699,177 - CSW01_17960 0.39 -0.4 699,177 - CSW01_17960 0.39 -0.3 699,177 - CSW01_17960 0.39 -2.2 699,184 - CSW01_17960 0.40 -1.0 699,259 + CSW01_17960 0.48 -2.8 699,302 - CSW01_17960 0.53 -2.8 699,324 - CSW01_17960 0.55 -0.9 699,324 - CSW01_17960 0.55 +1.5 699,376 + CSW01_17960 0.61 +1.9 699,395 + CSW01_17960 0.63 +0.5 699,403 - CSW01_17960 0.64 +0.7 699,464 - CSW01_17960 0.71 -0.2 699,464 - CSW01_17960 0.71 -1.3 699,531 + CSW01_17960 0.78 -0.1 699,531 + CSW01_17960 0.78 -2.9 699,532 + CSW01_17960 0.78 -0.9 699,539 - CSW01_17960 0.79 -0.2 699,540 - CSW01_17960 0.79 -1.0 699,559 - CSW01_17960 0.81 -0.8 699,640 - +1.0
Or see this region's nucleotide sequence