Experiment: ICP1_phage_235.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17745 and CSW01_17750 are separated by 139 nucleotides CSW01_17750 and CSW01_17755 overlap by 8 nucleotides CSW01_17755 and CSW01_17760 are separated by 55 nucleotides
CSW01_17745: CSW01_17745 - diacylglycerol kinase, at 656,541 to 656,897
_17745
CSW01_17750: CSW01_17750 - cytochrome B, at 657,037 to 657,354
_17750
CSW01_17755: CSW01_17755 - cytochrome B, at 657,347 to 657,883
_17755
CSW01_17760: CSW01_17760 - DNA helicase IV, at 657,939 to 660,002
_17760
Position (kb) 657
658 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 656.466 kb on + strand at 656.474 kb on - strand at 656.474 kb on - strand at 656.495 kb on - strand at 656.559 kb on + strand at 656.650 kb on + strand, within CSW01_17745 at 656.710 kb on + strand, within CSW01_17745 at 656.716 kb on - strand, within CSW01_17745 at 656.716 kb on - strand, within CSW01_17745 at 656.716 kb on - strand, within CSW01_17745 at 656.725 kb on + strand, within CSW01_17745 at 656.725 kb on + strand, within CSW01_17745 at 656.799 kb on - strand, within CSW01_17745 at 656.818 kb on - strand, within CSW01_17745 at 656.855 kb on + strand, within CSW01_17745 at 656.860 kb on + strand, within CSW01_17745 at 656.972 kb on - strand at 657.036 kb on + strand at 657.044 kb on - strand at 657.046 kb on + strand at 657.053 kb on + strand at 657.053 kb on + strand at 657.053 kb on + strand at 657.053 kb on + strand at 657.053 kb on + strand at 657.053 kb on + strand at 657.053 kb on + strand at 657.053 kb on + strand at 657.061 kb on - strand at 657.061 kb on - strand at 657.061 kb on - strand at 657.115 kb on + strand, within CSW01_17750 at 657.355 kb on + strand at 657.363 kb on + strand at 657.363 kb on - strand at 657.518 kb on - strand, within CSW01_17755 at 657.532 kb on + strand, within CSW01_17755 at 657.566 kb on + strand, within CSW01_17755 at 657.574 kb on + strand, within CSW01_17755 at 657.582 kb on - strand, within CSW01_17755 at 657.582 kb on - strand, within CSW01_17755 at 657.612 kb on - strand, within CSW01_17755 at 657.614 kb on + strand, within CSW01_17755 at 657.614 kb on + strand, within CSW01_17755 at 657.616 kb on + strand, within CSW01_17755 at 657.714 kb on - strand, within CSW01_17755 at 657.723 kb on + strand, within CSW01_17755 at 657.731 kb on - strand, within CSW01_17755 at 657.731 kb on - strand, within CSW01_17755 at 657.731 kb on - strand, within CSW01_17755 at 657.747 kb on + strand, within CSW01_17755 at 657.752 kb on + strand, within CSW01_17755 at 657.827 kb on - strand, within CSW01_17755 at 657.867 kb on + strand at 657.978 kb on + strand at 658.048 kb on + strand at 658.056 kb on - strand at 658.093 kb on + strand at 658.123 kb on + strand at 658.478 kb on + strand, within CSW01_17760 at 658.830 kb on + strand, within CSW01_17760 at 658.830 kb on + strand, within CSW01_17760 at 658.830 kb on + strand, within CSW01_17760
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1 remove 656,466 + -0.0 656,474 - -1.0 656,474 - +0.1 656,495 - -2.1 656,559 + -2.4 656,650 + CSW01_17745 0.31 -0.7 656,710 + CSW01_17745 0.47 +0.4 656,716 - CSW01_17745 0.49 -1.3 656,716 - CSW01_17745 0.49 +2.6 656,716 - CSW01_17745 0.49 -0.8 656,725 + CSW01_17745 0.52 -0.6 656,725 + CSW01_17745 0.52 -2.6 656,799 - CSW01_17745 0.72 -1.9 656,818 - CSW01_17745 0.78 +0.5 656,855 + CSW01_17745 0.88 -0.0 656,860 + CSW01_17745 0.89 +1.3 656,972 - -2.9 657,036 + +0.0 657,044 - +0.6 657,046 + +0.3 657,053 + +0.1 657,053 + +0.1 657,053 + -1.4 657,053 + +1.0 657,053 + -0.1 657,053 + -1.6 657,053 + -3.5 657,053 + +0.5 657,061 - -0.6 657,061 - -0.6 657,061 - +0.4 657,115 + CSW01_17750 0.25 -0.2 657,355 + -1.7 657,363 + +1.3 657,363 - +0.9 657,518 - CSW01_17755 0.32 +1.1 657,532 + CSW01_17755 0.34 +0.1 657,566 + CSW01_17755 0.41 +0.5 657,574 + CSW01_17755 0.42 -1.9 657,582 - CSW01_17755 0.44 +1.7 657,582 - CSW01_17755 0.44 -0.6 657,612 - CSW01_17755 0.49 +0.7 657,614 + CSW01_17755 0.50 +2.0 657,614 + CSW01_17755 0.50 +1.6 657,616 + CSW01_17755 0.50 +0.6 657,714 - CSW01_17755 0.68 -0.4 657,723 + CSW01_17755 0.70 +0.4 657,731 - CSW01_17755 0.72 -0.6 657,731 - CSW01_17755 0.72 +0.1 657,731 - CSW01_17755 0.72 +1.3 657,747 + CSW01_17755 0.74 +0.5 657,752 + CSW01_17755 0.75 -0.8 657,827 - CSW01_17755 0.89 +0.3 657,867 + -0.2 657,978 + -2.0 658,048 + +0.1 658,056 - -0.6 658,093 + +0.8 658,123 + -0.8 658,478 + CSW01_17760 0.26 -1.6 658,830 + CSW01_17760 0.43 -1.9 658,830 + CSW01_17760 0.43 -0.6 658,830 + CSW01_17760 0.43 +1.4
Or see this region's nucleotide sequence