Experiment: ICP1_phage_235.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17215 and CSW01_17220 are separated by 65 nucleotides CSW01_17220 and CSW01_17225 are separated by 24 nucleotides
CSW01_17215: CSW01_17215 - multidrug transporter, at 533,640 to 534,545
_17215
CSW01_17220: CSW01_17220 - phosphonate utilization transcriptional regulator PhnR, at 534,611 to 535,315
_17220
CSW01_17225: CSW01_17225 - putative 2-aminoethylphosphonate ABC transporter permease subunit, at 535,340 to 537,118
_17225
Position (kb) 534
535
536 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 533.895 kb on + strand, within CSW01_17215 at 533.997 kb on + strand, within CSW01_17215 at 534.187 kb on + strand, within CSW01_17215 at 534.199 kb on - strand, within CSW01_17215 at 534.206 kb on + strand, within CSW01_17215 at 534.322 kb on - strand, within CSW01_17215 at 534.509 kb on - strand at 534.545 kb on + strand at 534.578 kb on - strand at 534.617 kb on + strand at 534.632 kb on + strand at 534.690 kb on + strand, within CSW01_17220 at 534.705 kb on - strand, within CSW01_17220 at 534.734 kb on + strand, within CSW01_17220 at 534.787 kb on + strand, within CSW01_17220 at 534.802 kb on - strand, within CSW01_17220 at 534.839 kb on - strand, within CSW01_17220 at 534.859 kb on + strand, within CSW01_17220 at 534.874 kb on + strand, within CSW01_17220 at 534.916 kb on + strand, within CSW01_17220 at 535.103 kb on + strand, within CSW01_17220 at 535.172 kb on - strand, within CSW01_17220 at 535.224 kb on + strand, within CSW01_17220 at 535.333 kb on + strand at 535.356 kb on + strand at 535.382 kb on + strand at 535.452 kb on + strand at 535.523 kb on - strand, within CSW01_17225 at 535.577 kb on + strand, within CSW01_17225 at 535.577 kb on + strand, within CSW01_17225 at 535.577 kb on + strand, within CSW01_17225 at 535.577 kb on + strand, within CSW01_17225 at 535.585 kb on - strand, within CSW01_17225 at 535.639 kb on + strand, within CSW01_17225 at 535.788 kb on - strand, within CSW01_17225 at 535.788 kb on - strand, within CSW01_17225 at 535.788 kb on - strand, within CSW01_17225 at 535.814 kb on - strand, within CSW01_17225 at 535.892 kb on - strand, within CSW01_17225 at 535.935 kb on + strand, within CSW01_17225 at 535.941 kb on - strand, within CSW01_17225 at 535.943 kb on - strand, within CSW01_17225 at 535.945 kb on - strand, within CSW01_17225 at 535.966 kb on - strand, within CSW01_17225 at 536.092 kb on - strand, within CSW01_17225 at 536.111 kb on + strand, within CSW01_17225 at 536.121 kb on + strand, within CSW01_17225 at 536.121 kb on + strand, within CSW01_17225 at 536.124 kb on - strand, within CSW01_17225 at 536.124 kb on - strand, within CSW01_17225 at 536.129 kb on - strand, within CSW01_17225 at 536.129 kb on - strand, within CSW01_17225 at 536.129 kb on - strand, within CSW01_17225 at 536.131 kb on + strand, within CSW01_17225 at 536.257 kb on + strand, within CSW01_17225 at 536.262 kb on + strand, within CSW01_17225 at 536.262 kb on + strand, within CSW01_17225 at 536.265 kb on - strand, within CSW01_17225 at 536.265 kb on - strand, within CSW01_17225 at 536.270 kb on - strand, within CSW01_17225 at 536.270 kb on - strand, within CSW01_17225 at 536.270 kb on - strand, within CSW01_17225 at 536.270 kb on - strand, within CSW01_17225
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1 remove 533,895 + CSW01_17215 0.28 -0.2 533,997 + CSW01_17215 0.39 +1.0 534,187 + CSW01_17215 0.60 -1.4 534,199 - CSW01_17215 0.62 -2.3 534,206 + CSW01_17215 0.62 +1.2 534,322 - CSW01_17215 0.75 +1.3 534,509 - +0.5 534,545 + +0.9 534,578 - +0.3 534,617 + +2.2 534,632 + +0.1 534,690 + CSW01_17220 0.11 -2.3 534,705 - CSW01_17220 0.13 +2.2 534,734 + CSW01_17220 0.17 -1.9 534,787 + CSW01_17220 0.25 -2.1 534,802 - CSW01_17220 0.27 -0.9 534,839 - CSW01_17220 0.32 +0.4 534,859 + CSW01_17220 0.35 -0.6 534,874 + CSW01_17220 0.37 -0.5 534,916 + CSW01_17220 0.43 +1.4 535,103 + CSW01_17220 0.70 +0.2 535,172 - CSW01_17220 0.80 -0.1 535,224 + CSW01_17220 0.87 +2.7 535,333 + -2.3 535,356 + +1.7 535,382 + -0.6 535,452 + -0.6 535,523 - CSW01_17225 0.10 -1.4 535,577 + CSW01_17225 0.13 +0.5 535,577 + CSW01_17225 0.13 +1.2 535,577 + CSW01_17225 0.13 -0.5 535,577 + CSW01_17225 0.13 -0.8 535,585 - CSW01_17225 0.14 +1.8 535,639 + CSW01_17225 0.17 -2.1 535,788 - CSW01_17225 0.25 -2.8 535,788 - CSW01_17225 0.25 -1.0 535,788 - CSW01_17225 0.25 +0.3 535,814 - CSW01_17225 0.27 +0.5 535,892 - CSW01_17225 0.31 -2.6 535,935 + CSW01_17225 0.33 -0.5 535,941 - CSW01_17225 0.34 -0.1 535,943 - CSW01_17225 0.34 -0.8 535,945 - CSW01_17225 0.34 +0.6 535,966 - CSW01_17225 0.35 -0.3 536,092 - CSW01_17225 0.42 +0.8 536,111 + CSW01_17225 0.43 -0.0 536,121 + CSW01_17225 0.44 +1.3 536,121 + CSW01_17225 0.44 +0.6 536,124 - CSW01_17225 0.44 -0.5 536,124 - CSW01_17225 0.44 -0.1 536,129 - CSW01_17225 0.44 -2.7 536,129 - CSW01_17225 0.44 +0.4 536,129 - CSW01_17225 0.44 -0.1 536,131 + CSW01_17225 0.44 -1.8 536,257 + CSW01_17225 0.52 +2.6 536,262 + CSW01_17225 0.52 -0.2 536,262 + CSW01_17225 0.52 +0.1 536,265 - CSW01_17225 0.52 +2.1 536,265 - CSW01_17225 0.52 +0.8 536,270 - CSW01_17225 0.52 -0.2 536,270 - CSW01_17225 0.52 +0.8 536,270 - CSW01_17225 0.52 +0.2 536,270 - CSW01_17225 0.52 +0.6
Or see this region's nucleotide sequence