Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16890

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16885 and CSW01_16890 are separated by 102 nucleotidesCSW01_16890 and CSW01_16895 overlap by 11 nucleotidesCSW01_16895 and CSW01_16900 are separated by 199 nucleotides CSW01_16885: CSW01_16885 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 463,832 to 467,071 _16885 CSW01_16890: CSW01_16890 - sensor histidine kinase KdpD, at 467,174 to 468,667 _16890 CSW01_16895: CSW01_16895 - DNA-binding response regulator, at 468,657 to 469,349 _16895 CSW01_16900: CSW01_16900 - twin-arginine translocase TatA/TatE family subunit, at 469,549 to 469,785 _16900 Position (kb) 467 468 469Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 466.175 kb on + strand, within CSW01_16885at 466.180 kb on + strand, within CSW01_16885at 466.253 kb on - strand, within CSW01_16885at 466.365 kb on - strand, within CSW01_16885at 466.365 kb on - strand, within CSW01_16885at 466.365 kb on - strand, within CSW01_16885at 466.433 kb on + strand, within CSW01_16885at 466.493 kb on + strand, within CSW01_16885at 466.514 kb on - strand, within CSW01_16885at 466.537 kb on + strand, within CSW01_16885at 466.537 kb on + strand, within CSW01_16885at 466.537 kb on + strand, within CSW01_16885at 466.537 kb on + strand, within CSW01_16885at 466.537 kb on + strand, within CSW01_16885at 466.545 kb on - strand, within CSW01_16885at 466.545 kb on - strand, within CSW01_16885at 466.554 kb on - strand, within CSW01_16885at 466.564 kb on - strand, within CSW01_16885at 466.653 kb on + strand, within CSW01_16885at 466.660 kb on + strand, within CSW01_16885at 466.660 kb on + strand, within CSW01_16885at 466.660 kb on + strand, within CSW01_16885at 466.661 kb on - strand, within CSW01_16885at 466.666 kb on - strand, within CSW01_16885at 466.735 kb on - strand, within CSW01_16885at 466.735 kb on - strand, within CSW01_16885at 466.850 kb on + strandat 466.850 kb on + strandat 466.858 kb on - strandat 466.858 kb on - strandat 466.858 kb on - strandat 466.858 kb on - strandat 466.858 kb on - strandat 466.873 kb on + strandat 466.881 kb on - strandat 466.964 kb on + strandat 466.972 kb on - strandat 466.987 kb on + strandat 466.995 kb on + strandat 466.995 kb on - strandat 466.995 kb on - strandat 466.995 kb on - strandat 466.995 kb on - strandat 466.995 kb on - strandat 466.995 kb on - strandat 467.003 kb on + strandat 467.271 kb on - strandat 467.287 kb on - strandat 467.324 kb on + strand, within CSW01_16890at 467.478 kb on + strand, within CSW01_16890at 467.478 kb on + strand, within CSW01_16890at 467.484 kb on - strand, within CSW01_16890at 467.575 kb on + strand, within CSW01_16890at 467.602 kb on - strand, within CSW01_16890at 467.649 kb on + strand, within CSW01_16890at 467.742 kb on + strand, within CSW01_16890at 467.762 kb on + strand, within CSW01_16890at 467.837 kb on - strand, within CSW01_16890at 467.851 kb on + strand, within CSW01_16890at 467.858 kb on + strand, within CSW01_16890at 467.908 kb on - strand, within CSW01_16890at 467.992 kb on + strand, within CSW01_16890at 467.997 kb on + strand, within CSW01_16890at 468.060 kb on - strand, within CSW01_16890at 468.098 kb on - strand, within CSW01_16890at 468.157 kb on + strand, within CSW01_16890at 468.165 kb on - strand, within CSW01_16890at 468.170 kb on - strand, within CSW01_16890at 468.236 kb on + strand, within CSW01_16890at 468.265 kb on - strand, within CSW01_16890at 468.371 kb on + strand, within CSW01_16890at 468.394 kb on + strand, within CSW01_16890at 468.394 kb on + strand, within CSW01_16890at 468.394 kb on + strand, within CSW01_16890at 468.402 kb on - strand, within CSW01_16890at 468.609 kb on + strandat 468.777 kb on - strand, within CSW01_16895at 468.891 kb on - strand, within CSW01_16895at 468.971 kb on - strand, within CSW01_16895at 468.994 kb on - strand, within CSW01_16895at 469.036 kb on + strand, within CSW01_16895at 469.044 kb on - strand, within CSW01_16895at 469.268 kb on - strand, within CSW01_16895at 469.333 kb on - strandat 469.377 kb on + strandat 469.451 kb on - strandat 469.454 kb on + strandat 469.475 kb on - strandat 469.610 kb on - strand, within CSW01_16900

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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466,175 + CSW01_16885 0.72 -0.9
466,180 + CSW01_16885 0.72 -0.5
466,253 - CSW01_16885 0.75 +1.5
466,365 - CSW01_16885 0.78 -0.3
466,365 - CSW01_16885 0.78 -1.7
466,365 - CSW01_16885 0.78 -0.1
466,433 + CSW01_16885 0.80 -2.2
466,493 + CSW01_16885 0.82 +0.8
466,514 - CSW01_16885 0.83 -1.4
466,537 + CSW01_16885 0.83 +0.1
466,537 + CSW01_16885 0.83 -1.1
466,537 + CSW01_16885 0.83 -0.2
466,537 + CSW01_16885 0.83 +1.1
466,537 + CSW01_16885 0.83 +1.1
466,545 - CSW01_16885 0.84 -1.9
466,545 - CSW01_16885 0.84 -0.2
466,554 - CSW01_16885 0.84 +1.7
466,564 - CSW01_16885 0.84 -1.2
466,653 + CSW01_16885 0.87 -0.4
466,660 + CSW01_16885 0.87 -1.0
466,660 + CSW01_16885 0.87 -2.7
466,660 + CSW01_16885 0.87 +2.0
466,661 - CSW01_16885 0.87 +0.8
466,666 - CSW01_16885 0.87 -0.3
466,735 - CSW01_16885 0.90 -0.2
466,735 - CSW01_16885 0.90 -0.4
466,850 + +0.7
466,850 + +0.2
466,858 - -0.2
466,858 - -0.9
466,858 - +0.3
466,858 - +0.2
466,858 - +0.5
466,873 + +0.5
466,881 - -0.6
466,964 + -1.3
466,972 - -0.4
466,987 + +1.1
466,995 + +0.2
466,995 - -0.2
466,995 - -0.6
466,995 - +2.4
466,995 - -1.9
466,995 - +0.0
466,995 - +1.1
467,003 + -0.4
467,271 - +0.2
467,287 - +2.7
467,324 + CSW01_16890 0.10 -1.0
467,478 + CSW01_16890 0.20 +0.8
467,478 + CSW01_16890 0.20 -0.3
467,484 - CSW01_16890 0.21 -0.0
467,575 + CSW01_16890 0.27 +0.6
467,602 - CSW01_16890 0.29 -0.8
467,649 + CSW01_16890 0.32 +1.9
467,742 + CSW01_16890 0.38 -1.4
467,762 + CSW01_16890 0.39 -0.5
467,837 - CSW01_16890 0.44 -1.9
467,851 + CSW01_16890 0.45 -1.5
467,858 + CSW01_16890 0.46 +1.0
467,908 - CSW01_16890 0.49 -1.0
467,992 + CSW01_16890 0.55 -0.6
467,997 + CSW01_16890 0.55 -0.2
468,060 - CSW01_16890 0.59 -0.8
468,098 - CSW01_16890 0.62 -2.2
468,157 + CSW01_16890 0.66 -1.2
468,165 - CSW01_16890 0.66 -0.9
468,170 - CSW01_16890 0.67 -1.6
468,236 + CSW01_16890 0.71 -0.2
468,265 - CSW01_16890 0.73 +3.6
468,371 + CSW01_16890 0.80 -1.8
468,394 + CSW01_16890 0.82 +0.6
468,394 + CSW01_16890 0.82 -1.5
468,394 + CSW01_16890 0.82 -0.8
468,402 - CSW01_16890 0.82 -0.1
468,609 + -1.3
468,777 - CSW01_16895 0.17 +0.3
468,891 - CSW01_16895 0.34 -0.1
468,971 - CSW01_16895 0.45 -0.5
468,994 - CSW01_16895 0.49 -1.1
469,036 + CSW01_16895 0.55 +1.1
469,044 - CSW01_16895 0.56 +3.8
469,268 - CSW01_16895 0.88 +0.7
469,333 - -0.2
469,377 + -0.4
469,451 - +2.3
469,454 + +1.1
469,475 - -1.6
469,610 - CSW01_16900 0.26 -2.1

Or see this region's nucleotide sequence