Experiment: ICP1_phage_235.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16665 and CSW01_16670 are separated by 222 nucleotides CSW01_16670 and CSW01_16675 overlap by 4 nucleotides CSW01_16675 and CSW01_16680 are separated by 9 nucleotides CSW01_16680 and CSW01_16685 are separated by 81 nucleotides CSW01_16685 and CSW01_16690 overlap by 13 nucleotides CSW01_16690 and CSW01_16695 are separated by 233 nucleotides
CSW01_16665: CSW01_16665 - nucleotide pyrophosphohydrolase, at 422,213 to 422,584
_16665
CSW01_16670: CSW01_16670 - DUF1778 domain-containing protein, at 422,807 to 423,076
_16670
CSW01_16675: CSW01_16675 - N-acetyltransferase, at 423,073 to 423,606
_16675
CSW01_16680: CSW01_16680 - DUF3265 domain-containing protein, at 423,616 to 423,726
_16680
CSW01_16685: CSW01_16685 - prevent-host-death family protein, at 423,808 to 424,065
_16685
CSW01_16690: CSW01_16690 - type II toxin-antitoxin system RelE/ParE family toxin, at 424,053 to 424,355
_16690
CSW01_16695: CSW01_16695 - alpha/beta hydrolase, at 424,589 to 425,506
_16695
Position (kb) 423
424 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 422.131 kb on + strand at 422.131 kb on + strand at 422.160 kb on - strand at 422.167 kb on - strand at 422.183 kb on - strand at 422.185 kb on - strand at 422.241 kb on - strand at 422.333 kb on - strand, within CSW01_16665 at 422.370 kb on - strand, within CSW01_16665 at 422.390 kb on + strand, within CSW01_16665 at 422.411 kb on - strand, within CSW01_16665 at 422.580 kb on - strand at 422.597 kb on - strand at 422.599 kb on - strand at 422.599 kb on - strand at 423.092 kb on + strand at 423.178 kb on + strand, within CSW01_16675 at 423.196 kb on + strand, within CSW01_16675 at 423.196 kb on + strand, within CSW01_16675 at 423.214 kb on + strand, within CSW01_16675 at 423.222 kb on - strand, within CSW01_16675 at 423.283 kb on + strand, within CSW01_16675 at 423.370 kb on + strand, within CSW01_16675 at 423.400 kb on - strand, within CSW01_16675 at 423.400 kb on - strand, within CSW01_16675 at 423.412 kb on + strand, within CSW01_16675 at 423.425 kb on - strand, within CSW01_16675 at 423.456 kb on + strand, within CSW01_16675 at 423.542 kb on + strand, within CSW01_16675 at 423.664 kb on + strand, within CSW01_16680 at 423.846 kb on - strand, within CSW01_16685 at 424.038 kb on + strand, within CSW01_16685 at 424.082 kb on - strand at 424.083 kb on - strand at 424.087 kb on - strand, within CSW01_16690 at 424.092 kb on - strand, within CSW01_16690 at 424.112 kb on - strand, within CSW01_16690 at 424.204 kb on - strand, within CSW01_16690
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1 remove 422,131 + +0.5 422,131 + +1.6 422,160 - +0.5 422,167 - -0.8 422,183 - +0.1 422,185 - +1.5 422,241 - -1.0 422,333 - CSW01_16665 0.32 +1.1 422,370 - CSW01_16665 0.42 -0.5 422,390 + CSW01_16665 0.48 -0.4 422,411 - CSW01_16665 0.53 -2.8 422,580 - +0.8 422,597 - +0.3 422,599 - -0.9 422,599 - +0.6 423,092 + -3.1 423,178 + CSW01_16675 0.20 -2.3 423,196 + CSW01_16675 0.23 +0.2 423,196 + CSW01_16675 0.23 -1.7 423,214 + CSW01_16675 0.26 +1.1 423,222 - CSW01_16675 0.28 -1.0 423,283 + CSW01_16675 0.39 +1.9 423,370 + CSW01_16675 0.56 -2.0 423,400 - CSW01_16675 0.61 -0.9 423,400 - CSW01_16675 0.61 +1.1 423,412 + CSW01_16675 0.63 +0.4 423,425 - CSW01_16675 0.66 +2.4 423,456 + CSW01_16675 0.72 +0.0 423,542 + CSW01_16675 0.88 +0.9 423,664 + CSW01_16680 0.43 -0.6 423,846 - CSW01_16685 0.15 -0.4 424,038 + CSW01_16685 0.89 -0.8 424,082 - -2.3 424,083 - +0.7 424,087 - CSW01_16690 0.11 +0.4 424,092 - CSW01_16690 0.13 -2.0 424,112 - CSW01_16690 0.19 -0.9 424,204 - CSW01_16690 0.50 -1.9
Or see this region's nucleotide sequence