Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16490

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16480 and CSW01_16485 are separated by 146 nucleotidesCSW01_16485 and CSW01_16490 are separated by 142 nucleotidesCSW01_16490 and CSW01_16495 are separated by 813 nucleotides CSW01_16480: CSW01_16480 - DUF2806 domain-containing protein, at 406,720 to 407,577 _16480 CSW01_16485: CSW01_16485 - hypothetical protein, at 407,724 to 408,284 _16485 CSW01_16490: CSW01_16490 - hypothetical protein, at 408,427 to 408,774 _16490 CSW01_16495: CSW01_16495 - hypothetical protein, at 409,588 to 409,857 _16495 Position (kb) 408 409Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 407.492 kb on + strandat 407.549 kb on + strandat 407.556 kb on - strandat 407.557 kb on - strandat 407.557 kb on - strandat 407.592 kb on - strandat 407.606 kb on - strandat 407.636 kb on + strandat 407.644 kb on - strandat 407.649 kb on + strandat 407.649 kb on + strandat 407.649 kb on + strandat 407.649 kb on + strandat 407.649 kb on + strandat 407.657 kb on - strandat 407.679 kb on + strandat 407.679 kb on + strandat 407.689 kb on + strandat 407.689 kb on + strandat 407.697 kb on - strandat 407.702 kb on - strandat 407.702 kb on - strandat 407.702 kb on - strandat 407.712 kb on + strandat 407.720 kb on - strandat 407.757 kb on - strandat 407.767 kb on - strandat 407.769 kb on + strandat 407.769 kb on + strandat 407.769 kb on + strandat 407.769 kb on + strandat 407.777 kb on - strandat 407.777 kb on - strandat 407.777 kb on - strandat 407.777 kb on - strandat 407.777 kb on - strandat 407.777 kb on - strandat 407.777 kb on - strandat 407.777 kb on - strandat 407.812 kb on + strand, within CSW01_16485at 407.817 kb on + strand, within CSW01_16485at 407.822 kb on + strand, within CSW01_16485at 407.822 kb on + strand, within CSW01_16485at 407.825 kb on - strand, within CSW01_16485at 407.825 kb on - strand, within CSW01_16485at 407.827 kb on + strand, within CSW01_16485at 407.827 kb on + strand, within CSW01_16485at 407.830 kb on - strand, within CSW01_16485at 407.830 kb on - strand, within CSW01_16485at 407.830 kb on - strand, within CSW01_16485at 407.830 kb on - strand, within CSW01_16485at 407.834 kb on + strand, within CSW01_16485at 407.836 kb on + strand, within CSW01_16485at 407.836 kb on - strand, within CSW01_16485at 407.837 kb on - strand, within CSW01_16485at 407.841 kb on + strand, within CSW01_16485at 407.841 kb on + strand, within CSW01_16485at 407.844 kb on - strand, within CSW01_16485at 407.848 kb on + strand, within CSW01_16485at 407.849 kb on - strand, within CSW01_16485at 407.856 kb on - strand, within CSW01_16485at 407.867 kb on + strand, within CSW01_16485at 407.867 kb on + strand, within CSW01_16485at 407.867 kb on + strand, within CSW01_16485at 407.867 kb on + strand, within CSW01_16485at 407.867 kb on + strand, within CSW01_16485at 407.867 kb on + strand, within CSW01_16485at 407.875 kb on - strand, within CSW01_16485at 407.875 kb on - strand, within CSW01_16485at 407.875 kb on - strand, within CSW01_16485at 407.875 kb on - strand, within CSW01_16485at 407.875 kb on - strand, within CSW01_16485at 407.875 kb on - strand, within CSW01_16485at 407.875 kb on - strand, within CSW01_16485at 407.875 kb on - strand, within CSW01_16485at 407.885 kb on - strand, within CSW01_16485at 407.982 kb on + strand, within CSW01_16485at 407.982 kb on + strand, within CSW01_16485at 407.990 kb on - strand, within CSW01_16485at 407.995 kb on - strand, within CSW01_16485at 408.015 kb on + strand, within CSW01_16485at 408.036 kb on - strand, within CSW01_16485at 408.044 kb on + strand, within CSW01_16485at 408.096 kb on + strand, within CSW01_16485at 408.133 kb on + strand, within CSW01_16485at 408.133 kb on + strand, within CSW01_16485at 408.255 kb on + strandat 408.255 kb on + strandat 408.263 kb on - strandat 408.263 kb on - strandat 408.274 kb on + strandat 408.396 kb on - strandat 408.396 kb on - strandat 408.396 kb on - strandat 409.083 kb on - strandat 409.103 kb on - strandat 409.103 kb on - strandat 409.133 kb on - strandat 409.217 kb on + strandat 409.262 kb on + strandat 409.316 kb on - strandat 409.552 kb on - strandat 409.668 kb on + strand, within CSW01_16495at 409.668 kb on + strand, within CSW01_16495at 409.668 kb on + strand, within CSW01_16495at 409.676 kb on - strand, within CSW01_16495at 409.703 kb on + strand, within CSW01_16495at 409.703 kb on + strand, within CSW01_16495at 409.711 kb on - strand, within CSW01_16495at 409.721 kb on - strand, within CSW01_16495

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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407,492 + -1.5
407,549 + -2.4
407,556 - -0.2
407,557 - -0.5
407,557 - -2.2
407,592 - +0.1
407,606 - +0.8
407,636 + -0.3
407,644 - -0.2
407,649 + +0.2
407,649 + -0.3
407,649 + +1.3
407,649 + -1.3
407,649 + +0.1
407,657 - +1.6
407,679 + -0.2
407,679 + -1.9
407,689 + +0.9
407,689 + -0.6
407,697 - +0.1
407,702 - +0.7
407,702 - +1.6
407,702 - -0.1
407,712 + -2.6
407,720 - -2.2
407,757 - +0.9
407,767 - +0.8
407,769 + -2.9
407,769 + -1.1
407,769 + +0.3
407,769 + +0.6
407,777 - +0.6
407,777 - +0.6
407,777 - +0.4
407,777 - -2.1
407,777 - +1.4
407,777 - +0.2
407,777 - -0.3
407,777 - -3.0
407,812 + CSW01_16485 0.16 -0.2
407,817 + CSW01_16485 0.17 -0.7
407,822 + CSW01_16485 0.17 -0.6
407,822 + CSW01_16485 0.17 +0.4
407,825 - CSW01_16485 0.18 +0.6
407,825 - CSW01_16485 0.18 +0.7
407,827 + CSW01_16485 0.18 +0.5
407,827 + CSW01_16485 0.18 +0.8
407,830 - CSW01_16485 0.19 -2.6
407,830 - CSW01_16485 0.19 +1.6
407,830 - CSW01_16485 0.19 -0.6
407,830 - CSW01_16485 0.19 -1.8
407,834 + CSW01_16485 0.20 -2.2
407,836 + CSW01_16485 0.20 -0.3
407,836 - CSW01_16485 0.20 +0.4
407,837 - CSW01_16485 0.20 +0.4
407,841 + CSW01_16485 0.21 -1.5
407,841 + CSW01_16485 0.21 -0.6
407,844 - CSW01_16485 0.21 -2.7
407,848 + CSW01_16485 0.22 -0.5
407,849 - CSW01_16485 0.22 +1.2
407,856 - CSW01_16485 0.24 +0.0
407,867 + CSW01_16485 0.25 -1.9
407,867 + CSW01_16485 0.25 -1.8
407,867 + CSW01_16485 0.25 -0.2
407,867 + CSW01_16485 0.25 -0.5
407,867 + CSW01_16485 0.25 -0.8
407,867 + CSW01_16485 0.25 -0.5
407,875 - CSW01_16485 0.27 -0.0
407,875 - CSW01_16485 0.27 +0.8
407,875 - CSW01_16485 0.27 +0.8
407,875 - CSW01_16485 0.27 -1.4
407,875 - CSW01_16485 0.27 +0.2
407,875 - CSW01_16485 0.27 +0.9
407,875 - CSW01_16485 0.27 +0.6
407,875 - CSW01_16485 0.27 -0.7
407,885 - CSW01_16485 0.29 -2.2
407,982 + CSW01_16485 0.46 -2.1
407,982 + CSW01_16485 0.46 +0.5
407,990 - CSW01_16485 0.47 +1.1
407,995 - CSW01_16485 0.48 -1.7
408,015 + CSW01_16485 0.52 +0.7
408,036 - CSW01_16485 0.56 +0.0
408,044 + CSW01_16485 0.57 +1.8
408,096 + CSW01_16485 0.66 +1.0
408,133 + CSW01_16485 0.73 -0.6
408,133 + CSW01_16485 0.73 +0.3
408,255 + +0.2
408,255 + -1.8
408,263 - +1.1
408,263 - +0.1
408,274 + -1.5
408,396 - +0.3
408,396 - -1.5
408,396 - -0.4
409,083 - +0.7
409,103 - -0.6
409,103 - -0.1
409,133 - +0.1
409,217 + -0.3
409,262 + -0.8
409,316 - -0.9
409,552 - +0.2
409,668 + CSW01_16495 0.30 +0.1
409,668 + CSW01_16495 0.30 -1.2
409,668 + CSW01_16495 0.30 -0.8
409,676 - CSW01_16495 0.33 +0.5
409,703 + CSW01_16495 0.43 +0.4
409,703 + CSW01_16495 0.43 -1.2
409,711 - CSW01_16495 0.46 +1.0
409,721 - CSW01_16495 0.49 -1.1

Or see this region's nucleotide sequence