Experiment: ICP1_phage_235.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16345 and CSW01_16350 overlap by 8 nucleotides CSW01_16350 and CSW01_16355 are separated by 25 nucleotides CSW01_16355 and CSW01_16360 are separated by 27 nucleotides CSW01_16360 and CSW01_16365 are separated by 187 nucleotides CSW01_16365 and CSW01_16370 are separated by 152 nucleotides CSW01_16370 and CSW01_16375 are separated by 119 nucleotides
CSW01_16345: CSW01_16345 - N-acetyltransferase, at 392,222 to 392,737
_16345
CSW01_16350: CSW01_16350 - plasmid stabilization protein, at 392,730 to 392,801
_16350
CSW01_16355: CSW01_16355 - acetyltransferase, at 392,827 to 393,006
_16355
CSW01_16360: CSW01_16360 - hypothetical protein, at 393,034 to 393,238
_16360
CSW01_16365: CSW01_16365 - LD-carboxypeptidase, at 393,426 to 394,430
_16365
CSW01_16370: CSW01_16370 - hypothetical protein, at 394,583 to 395,029
_16370
CSW01_16375: CSW01_16375 - hypothetical protein, at 395,149 to 396,078
_16375
Position (kb) 393
394
395 Strain fitness (log2 ratio) -2
-1
0
1
2 at 392.611 kb on + strand, within CSW01_16345 at 392.796 kb on + strand at 392.830 kb on - strand at 393.449 kb on - strand at 393.449 kb on - strand at 394.533 kb on + strand at 394.694 kb on + strand, within CSW01_16370 at 394.694 kb on + strand, within CSW01_16370 at 394.694 kb on + strand, within CSW01_16370 at 394.694 kb on + strand, within CSW01_16370 at 394.694 kb on + strand, within CSW01_16370 at 394.702 kb on - strand, within CSW01_16370 at 394.702 kb on - strand, within CSW01_16370 at 394.702 kb on - strand, within CSW01_16370 at 394.702 kb on - strand, within CSW01_16370 at 394.704 kb on + strand, within CSW01_16370 at 394.704 kb on + strand, within CSW01_16370 at 394.704 kb on + strand, within CSW01_16370 at 394.710 kb on - strand, within CSW01_16370 at 394.712 kb on - strand, within CSW01_16370 at 394.773 kb on + strand, within CSW01_16370 at 394.800 kb on - strand, within CSW01_16370 at 394.843 kb on - strand, within CSW01_16370 at 394.852 kb on + strand, within CSW01_16370 at 394.877 kb on + strand, within CSW01_16370 at 394.930 kb on + strand, within CSW01_16370 at 395.005 kb on + strand at 395.005 kb on + strand at 395.005 kb on + strand at 395.005 kb on + strand at 395.005 kb on + strand at 395.005 kb on + strand at 395.005 kb on + strand at 395.005 kb on + strand at 395.005 kb on + strand at 395.005 kb on + strand at 395.005 kb on + strand at 395.005 kb on + strand at 395.005 kb on + strand at 395.005 kb on + strand at 395.013 kb on - strand at 395.013 kb on - strand at 395.013 kb on - strand at 395.013 kb on - strand at 395.013 kb on - strand at 395.013 kb on - strand at 395.013 kb on - strand at 395.013 kb on - strand at 395.013 kb on - strand at 395.013 kb on - strand at 395.013 kb on - strand at 395.013 kb on - strand at 395.026 kb on - strand at 395.042 kb on - strand at 395.044 kb on - strand at 395.044 kb on - strand at 395.044 kb on - strand at 395.044 kb on - strand at 395.086 kb on + strand at 395.088 kb on + strand at 395.088 kb on + strand at 395.125 kb on - strand at 395.142 kb on - strand at 395.143 kb on + strand at 395.143 kb on + strand at 395.158 kb on + strand at 395.170 kb on - strand at 395.222 kb on - strand at 395.235 kb on - strand at 395.240 kb on - strand at 395.315 kb on - strand, within CSW01_16375 at 395.315 kb on - strand, within CSW01_16375 at 395.325 kb on - strand, within CSW01_16375 at 395.346 kb on - strand, within CSW01_16375 at 395.347 kb on + strand, within CSW01_16375
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1 remove 392,611 + CSW01_16345 0.75 -0.3 392,796 + -2.6 392,830 - +0.1 393,449 - -0.2 393,449 - -0.6 394,533 + -1.3 394,694 + CSW01_16370 0.25 -1.9 394,694 + CSW01_16370 0.25 -2.1 394,694 + CSW01_16370 0.25 +1.3 394,694 + CSW01_16370 0.25 -0.2 394,694 + CSW01_16370 0.25 -0.5 394,702 - CSW01_16370 0.27 +0.1 394,702 - CSW01_16370 0.27 -1.3 394,702 - CSW01_16370 0.27 -0.5 394,702 - CSW01_16370 0.27 +0.9 394,704 + CSW01_16370 0.27 +0.5 394,704 + CSW01_16370 0.27 -0.6 394,704 + CSW01_16370 0.27 -0.1 394,710 - CSW01_16370 0.28 -0.4 394,712 - CSW01_16370 0.29 -0.1 394,773 + CSW01_16370 0.43 -0.5 394,800 - CSW01_16370 0.49 -2.1 394,843 - CSW01_16370 0.58 -0.5 394,852 + CSW01_16370 0.60 -2.4 394,877 + CSW01_16370 0.66 -0.2 394,930 + CSW01_16370 0.78 -0.7 395,005 + -0.4 395,005 + -1.1 395,005 + +0.4 395,005 + -1.5 395,005 + -0.6 395,005 + -0.0 395,005 + +0.4 395,005 + +0.7 395,005 + +2.0 395,005 + -0.1 395,005 + +0.5 395,005 + +1.2 395,005 + -1.1 395,005 + -0.2 395,013 - -0.8 395,013 - +0.6 395,013 - +0.1 395,013 - +0.2 395,013 - +0.4 395,013 - -1.0 395,013 - +0.8 395,013 - +0.5 395,013 - +0.1 395,013 - +0.2 395,013 - +0.5 395,013 - +1.7 395,026 - -0.2 395,042 - -0.0 395,044 - +0.5 395,044 - -0.9 395,044 - -0.3 395,044 - -1.7 395,086 + -0.8 395,088 + +1.0 395,088 + +0.8 395,125 - -0.2 395,142 - +1.0 395,143 + -0.2 395,143 + -1.1 395,158 + +1.3 395,170 - +0.1 395,222 - -1.4 395,235 - -0.4 395,240 - +1.0 395,315 - CSW01_16375 0.18 -1.7 395,315 - CSW01_16375 0.18 +0.0 395,325 - CSW01_16375 0.19 +1.3 395,346 - CSW01_16375 0.21 -0.3 395,347 + CSW01_16375 0.21 +0.6
Or see this region's nucleotide sequence