Experiment: ICP1_phage_235.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16280 and CSW01_16285 are separated by 66 nucleotides CSW01_16285 and CSW01_16290 overlap by 4 nucleotides CSW01_16290 and CSW01_16295 overlap by 25 nucleotides CSW01_16295 and CSW01_16300 overlap by 84 nucleotides CSW01_16300 and CSW01_16305 are separated by 175 nucleotides CSW01_16305 and CSW01_16310 are separated by 325 nucleotides CSW01_16310 and CSW01_16315 are separated by 269 nucleotides
CSW01_16280: CSW01_16280 - DUF3465 domain-containing protein, at 387,166 to 387,591
_16280
CSW01_16285: CSW01_16285 - acetyltransferase, at 387,658 to 387,772
_16285
CSW01_16290: CSW01_16290 - DUF1289 domain-containing protein, at 387,769 to 388,002
_16290
CSW01_16295: CSW01_16295 - DUF1196 domain-containing protein, at 387,978 to 388,136
_16295
CSW01_16300: CSW01_16300 - transcriptional regulator, at 388,053 to 388,190
_16300
CSW01_16305: CSW01_16305 - hypothetical protein, at 388,366 to 388,791
_16305
CSW01_16310: CSW01_16310 - DUF3709 domain-containing protein, at 389,117 to 389,350
_16310
CSW01_16315: CSW01_16315 - hypothetical protein, at 389,620 to 389,934
_16315
Position (kb) 388
389 Strain fitness (log2 ratio) -1
0
1
2 at 387.755 kb on - strand, within CSW01_16285 at 387.816 kb on + strand, within CSW01_16290 at 389.138 kb on - strand at 389.162 kb on - strand, within CSW01_16310 at 389.184 kb on + strand, within CSW01_16310 at 389.463 kb on - strand at 389.478 kb on - strand
Per-strain Table
Or see this region's nucleotide sequence