Experiment: ICP1_phage_235.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15940 and CSW01_15945 are separated by 387 nucleotides CSW01_15945 and CSW01_15950 are separated by 47 nucleotides CSW01_15950 and CSW01_15955 are separated by 72 nucleotides CSW01_15955 and CSW01_15960 are separated by 252 nucleotides
CSW01_15940: CSW01_15940 - IS3 family transposase, at 355,365 to 356,542
_15940
CSW01_15945: CSW01_15945 - DUF1817 domain-containing protein, at 356,930 to 357,967
_15945
CSW01_15950: CSW01_15950 - hypothetical protein, at 358,015 to 358,074
_15950
CSW01_15955: CSW01_15955 - DUF3709 domain-containing protein, at 358,147 to 358,470
_15955
CSW01_15960: CSW01_15960 - hypothetical protein, at 358,723 to 359,118
_15960
Position (kb) 356
357
358 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 356.623 kb on + strand at 356.623 kb on + strand at 356.678 kb on + strand at 356.814 kb on - strand at 356.814 kb on - strand at 356.814 kb on - strand at 357.002 kb on + strand at 357.118 kb on + strand, within CSW01_15945 at 357.152 kb on - strand, within CSW01_15945 at 357.157 kb on + strand, within CSW01_15945 at 357.160 kb on - strand, within CSW01_15945 at 357.160 kb on - strand, within CSW01_15945 at 357.180 kb on - strand, within CSW01_15945 at 357.274 kb on + strand, within CSW01_15945 at 357.274 kb on + strand, within CSW01_15945 at 357.274 kb on + strand, within CSW01_15945 at 357.274 kb on + strand, within CSW01_15945 at 357.274 kb on + strand, within CSW01_15945 at 357.274 kb on + strand, within CSW01_15945 at 357.274 kb on + strand, within CSW01_15945 at 357.282 kb on - strand, within CSW01_15945 at 357.282 kb on - strand, within CSW01_15945 at 357.288 kb on + strand, within CSW01_15945 at 357.301 kb on - strand, within CSW01_15945 at 357.306 kb on - strand, within CSW01_15945 at 357.374 kb on + strand, within CSW01_15945 at 357.384 kb on + strand, within CSW01_15945 at 357.384 kb on + strand, within CSW01_15945 at 357.384 kb on + strand, within CSW01_15945 at 357.392 kb on - strand, within CSW01_15945 at 357.392 kb on - strand, within CSW01_15945 at 357.392 kb on - strand, within CSW01_15945 at 357.392 kb on - strand, within CSW01_15945 at 357.392 kb on - strand, within CSW01_15945 at 357.392 kb on - strand, within CSW01_15945 at 357.392 kb on - strand, within CSW01_15945 at 357.399 kb on + strand, within CSW01_15945 at 357.427 kb on + strand, within CSW01_15945 at 357.427 kb on + strand, within CSW01_15945 at 357.427 kb on + strand, within CSW01_15945 at 357.440 kb on - strand, within CSW01_15945 at 357.495 kb on + strand, within CSW01_15945 at 357.516 kb on + strand, within CSW01_15945 at 357.516 kb on + strand, within CSW01_15945 at 357.518 kb on + strand, within CSW01_15945 at 357.705 kb on - strand, within CSW01_15945 at 357.709 kb on + strand, within CSW01_15945 at 357.709 kb on + strand, within CSW01_15945 at 357.716 kb on - strand, within CSW01_15945 at 357.718 kb on + strand, within CSW01_15945 at 357.722 kb on - strand, within CSW01_15945 at 357.730 kb on - strand, within CSW01_15945 at 357.734 kb on + strand, within CSW01_15945 at 357.827 kb on - strand, within CSW01_15945 at 357.858 kb on + strand, within CSW01_15945 at 357.956 kb on - strand at 357.972 kb on - strand at 357.974 kb on + strand at 357.982 kb on - strand at 357.982 kb on - strand at 357.982 kb on - strand at 357.982 kb on - strand at 357.983 kb on + strand at 358.075 kb on - strand at 358.100 kb on + strand at 358.184 kb on - strand, within CSW01_15955 at 358.184 kb on - strand, within CSW01_15955 at 358.274 kb on + strand, within CSW01_15955 at 358.274 kb on + strand, within CSW01_15955 at 358.496 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1 remove 356,623 + +0.6 356,623 + -1.1 356,678 + +0.8 356,814 - -1.1 356,814 - +0.4 356,814 - +1.2 357,002 + -3.1 357,118 + CSW01_15945 0.18 +0.4 357,152 - CSW01_15945 0.21 -3.0 357,157 + CSW01_15945 0.22 +0.5 357,160 - CSW01_15945 0.22 -0.6 357,160 - CSW01_15945 0.22 -0.5 357,180 - CSW01_15945 0.24 -1.5 357,274 + CSW01_15945 0.33 -3.0 357,274 + CSW01_15945 0.33 +0.1 357,274 + CSW01_15945 0.33 -1.2 357,274 + CSW01_15945 0.33 -0.0 357,274 + CSW01_15945 0.33 +0.7 357,274 + CSW01_15945 0.33 -2.0 357,274 + CSW01_15945 0.33 -0.2 357,282 - CSW01_15945 0.34 +1.7 357,282 - CSW01_15945 0.34 +0.9 357,288 + CSW01_15945 0.34 -0.6 357,301 - CSW01_15945 0.36 +0.6 357,306 - CSW01_15945 0.36 +0.7 357,374 + CSW01_15945 0.43 +1.4 357,384 + CSW01_15945 0.44 -0.3 357,384 + CSW01_15945 0.44 +1.0 357,384 + CSW01_15945 0.44 +0.1 357,392 - CSW01_15945 0.45 +1.0 357,392 - CSW01_15945 0.45 -0.4 357,392 - CSW01_15945 0.45 +0.2 357,392 - CSW01_15945 0.45 +0.2 357,392 - CSW01_15945 0.45 +2.7 357,392 - CSW01_15945 0.45 +1.3 357,392 - CSW01_15945 0.45 -1.9 357,399 + CSW01_15945 0.45 -2.3 357,427 + CSW01_15945 0.48 -0.7 357,427 + CSW01_15945 0.48 +1.3 357,427 + CSW01_15945 0.48 +1.0 357,440 - CSW01_15945 0.49 -0.2 357,495 + CSW01_15945 0.54 -0.4 357,516 + CSW01_15945 0.56 +0.5 357,516 + CSW01_15945 0.56 +0.1 357,518 + CSW01_15945 0.57 -0.1 357,705 - CSW01_15945 0.75 +1.2 357,709 + CSW01_15945 0.75 +0.4 357,709 + CSW01_15945 0.75 +1.0 357,716 - CSW01_15945 0.76 -0.5 357,718 + CSW01_15945 0.76 +0.3 357,722 - CSW01_15945 0.76 -0.8 357,730 - CSW01_15945 0.77 +0.3 357,734 + CSW01_15945 0.77 +0.6 357,827 - CSW01_15945 0.86 -1.0 357,858 + CSW01_15945 0.89 -1.4 357,956 - -1.4 357,972 - +0.5 357,974 + -0.4 357,982 - +0.1 357,982 - +1.1 357,982 - +1.3 357,982 - -2.6 357,983 + -0.4 358,075 - -1.5 358,100 + +0.6 358,184 - CSW01_15955 0.11 -1.3 358,184 - CSW01_15955 0.11 +0.4 358,274 + CSW01_15955 0.39 +0.5 358,274 + CSW01_15955 0.39 +0.5 358,496 - +2.0
Or see this region's nucleotide sequence