Experiment: ICP1_phage_235.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15930 and CSW01_15935 are separated by 60 nucleotides CSW01_15935 and CSW01_15940 overlap by 4 nucleotides CSW01_15940 and CSW01_15945 are separated by 387 nucleotides
CSW01_15930: CSW01_15930 - hypothetical protein, at 353,998 to 354,612
_15930
CSW01_15935: CSW01_15935 - chemotaxis protein, at 354,673 to 355,368
_15935
CSW01_15940: CSW01_15940 - IS3 family transposase, at 355,365 to 356,542
_15940
CSW01_15945: CSW01_15945 - DUF1817 domain-containing protein, at 356,930 to 357,967
_15945
Position (kb) 355
356
357 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 354.368 kb on + strand, within CSW01_15930 at 354.448 kb on - strand, within CSW01_15930 at 354.448 kb on - strand, within CSW01_15930 at 354.458 kb on - strand, within CSW01_15930 at 354.533 kb on - strand, within CSW01_15930 at 354.557 kb on + strand at 356.623 kb on + strand at 356.623 kb on + strand at 356.678 kb on + strand at 356.814 kb on - strand at 356.814 kb on - strand at 356.814 kb on - strand at 357.002 kb on + strand at 357.118 kb on + strand, within CSW01_15945 at 357.152 kb on - strand, within CSW01_15945 at 357.157 kb on + strand, within CSW01_15945 at 357.160 kb on - strand, within CSW01_15945 at 357.160 kb on - strand, within CSW01_15945 at 357.180 kb on - strand, within CSW01_15945 at 357.274 kb on + strand, within CSW01_15945 at 357.274 kb on + strand, within CSW01_15945 at 357.274 kb on + strand, within CSW01_15945 at 357.274 kb on + strand, within CSW01_15945 at 357.274 kb on + strand, within CSW01_15945 at 357.274 kb on + strand, within CSW01_15945 at 357.274 kb on + strand, within CSW01_15945 at 357.282 kb on - strand, within CSW01_15945 at 357.282 kb on - strand, within CSW01_15945 at 357.288 kb on + strand, within CSW01_15945 at 357.301 kb on - strand, within CSW01_15945 at 357.306 kb on - strand, within CSW01_15945 at 357.374 kb on + strand, within CSW01_15945 at 357.384 kb on + strand, within CSW01_15945 at 357.384 kb on + strand, within CSW01_15945 at 357.384 kb on + strand, within CSW01_15945 at 357.392 kb on - strand, within CSW01_15945 at 357.392 kb on - strand, within CSW01_15945 at 357.392 kb on - strand, within CSW01_15945 at 357.392 kb on - strand, within CSW01_15945 at 357.392 kb on - strand, within CSW01_15945 at 357.392 kb on - strand, within CSW01_15945 at 357.392 kb on - strand, within CSW01_15945 at 357.399 kb on + strand, within CSW01_15945 at 357.427 kb on + strand, within CSW01_15945 at 357.427 kb on + strand, within CSW01_15945 at 357.427 kb on + strand, within CSW01_15945 at 357.440 kb on - strand, within CSW01_15945 at 357.495 kb on + strand, within CSW01_15945 at 357.516 kb on + strand, within CSW01_15945 at 357.516 kb on + strand, within CSW01_15945 at 357.518 kb on + strand, within CSW01_15945
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1 remove 354,368 + CSW01_15930 0.60 -1.6 354,448 - CSW01_15930 0.73 +0.0 354,448 - CSW01_15930 0.73 +0.7 354,458 - CSW01_15930 0.75 +2.2 354,533 - CSW01_15930 0.87 -0.3 354,557 + -1.3 356,623 + +0.6 356,623 + -1.1 356,678 + +0.8 356,814 - -1.1 356,814 - +0.4 356,814 - +1.2 357,002 + -3.1 357,118 + CSW01_15945 0.18 +0.4 357,152 - CSW01_15945 0.21 -3.0 357,157 + CSW01_15945 0.22 +0.5 357,160 - CSW01_15945 0.22 -0.6 357,160 - CSW01_15945 0.22 -0.5 357,180 - CSW01_15945 0.24 -1.5 357,274 + CSW01_15945 0.33 -3.0 357,274 + CSW01_15945 0.33 +0.1 357,274 + CSW01_15945 0.33 -1.2 357,274 + CSW01_15945 0.33 -0.0 357,274 + CSW01_15945 0.33 +0.7 357,274 + CSW01_15945 0.33 -2.0 357,274 + CSW01_15945 0.33 -0.2 357,282 - CSW01_15945 0.34 +1.7 357,282 - CSW01_15945 0.34 +0.9 357,288 + CSW01_15945 0.34 -0.6 357,301 - CSW01_15945 0.36 +0.6 357,306 - CSW01_15945 0.36 +0.7 357,374 + CSW01_15945 0.43 +1.4 357,384 + CSW01_15945 0.44 -0.3 357,384 + CSW01_15945 0.44 +1.0 357,384 + CSW01_15945 0.44 +0.1 357,392 - CSW01_15945 0.45 +1.0 357,392 - CSW01_15945 0.45 -0.4 357,392 - CSW01_15945 0.45 +0.2 357,392 - CSW01_15945 0.45 +0.2 357,392 - CSW01_15945 0.45 +2.7 357,392 - CSW01_15945 0.45 +1.3 357,392 - CSW01_15945 0.45 -1.9 357,399 + CSW01_15945 0.45 -2.3 357,427 + CSW01_15945 0.48 -0.7 357,427 + CSW01_15945 0.48 +1.3 357,427 + CSW01_15945 0.48 +1.0 357,440 - CSW01_15945 0.49 -0.2 357,495 + CSW01_15945 0.54 -0.4 357,516 + CSW01_15945 0.56 +0.5 357,516 + CSW01_15945 0.56 +0.1 357,518 + CSW01_15945 0.57 -0.1
Or see this region's nucleotide sequence