Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15915

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15905 and CSW01_15910 are separated by 56 nucleotidesCSW01_15910 and CSW01_15915 are separated by 280 nucleotidesCSW01_15915 and CSW01_15920 overlap by 35 nucleotidesCSW01_15920 and CSW01_15925 are separated by 111 nucleotides CSW01_15905: CSW01_15905 - hypothetical protein, at 350,858 to 350,953 _15905 CSW01_15910: CSW01_15910 - hypothetical protein, at 351,010 to 351,609 _15910 CSW01_15915: CSW01_15915 - restriction endonuclease, at 351,890 to 352,825 _15915 CSW01_15920: CSW01_15920 - DUF3265 domain-containing protein, at 352,791 to 352,931 _15920 CSW01_15925: CSW01_15925 - hypothetical protein, at 353,043 to 354,065 _15925 Position (kb) 351 352 353Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 351.089 kb on - strand, within CSW01_15910at 351.123 kb on - strand, within CSW01_15910at 351.133 kb on - strand, within CSW01_15910at 351.135 kb on - strand, within CSW01_15910at 351.273 kb on + strand, within CSW01_15910at 351.278 kb on + strand, within CSW01_15910at 351.333 kb on + strand, within CSW01_15910at 351.333 kb on - strand, within CSW01_15910at 351.439 kb on - strand, within CSW01_15910at 351.496 kb on - strand, within CSW01_15910at 351.675 kb on + strandat 351.703 kb on - strandat 351.703 kb on - strandat 351.703 kb on - strandat 351.730 kb on - strandat 351.840 kb on - strandat 351.849 kb on + strandat 351.849 kb on + strandat 351.854 kb on + strandat 351.856 kb on + strandat 351.857 kb on - strandat 351.857 kb on - strandat 351.857 kb on - strandat 351.857 kb on - strandat 351.864 kb on - strandat 351.864 kb on - strandat 351.866 kb on + strandat 351.874 kb on - strandat 352.044 kb on - strand, within CSW01_15915at 352.050 kb on + strand, within CSW01_15915at 352.077 kb on + strand, within CSW01_15915at 352.077 kb on + strand, within CSW01_15915at 352.091 kb on - strand, within CSW01_15915at 352.177 kb on + strand, within CSW01_15915at 352.185 kb on - strand, within CSW01_15915at 352.308 kb on + strand, within CSW01_15915at 352.318 kb on + strand, within CSW01_15915at 352.321 kb on - strand, within CSW01_15915at 352.361 kb on - strand, within CSW01_15915at 352.487 kb on + strand, within CSW01_15915at 352.487 kb on + strand, within CSW01_15915at 352.496 kb on + strand, within CSW01_15915at 352.506 kb on - strand, within CSW01_15915at 352.589 kb on - strand, within CSW01_15915at 352.651 kb on + strand, within CSW01_15915at 352.664 kb on - strand, within CSW01_15915at 352.669 kb on - strand, within CSW01_15915at 352.669 kb on - strand, within CSW01_15915at 352.671 kb on + strand, within CSW01_15915at 352.679 kb on - strand, within CSW01_15915at 352.679 kb on - strand, within CSW01_15915at 352.764 kb on - strandat 352.764 kb on - strandat 352.778 kb on - strandat 352.778 kb on - strandat 352.832 kb on + strand, within CSW01_15920at 352.840 kb on - strand, within CSW01_15920at 352.890 kb on - strand, within CSW01_15920at 352.898 kb on - strand, within CSW01_15920at 352.904 kb on + strand, within CSW01_15920at 352.924 kb on + strandat 352.924 kb on + strandat 352.932 kb on - strandat 352.932 kb on - strandat 352.932 kb on - strandat 352.932 kb on - strandat 352.932 kb on - strandat 352.997 kb on - strandat 353.048 kb on + strandat 353.056 kb on - strandat 353.216 kb on + strand, within CSW01_15925at 353.234 kb on - strand, within CSW01_15925at 353.286 kb on - strand, within CSW01_15925at 353.287 kb on - strand, within CSW01_15925at 353.324 kb on + strand, within CSW01_15925at 353.342 kb on + strand, within CSW01_15925at 353.349 kb on + strand, within CSW01_15925at 353.375 kb on + strand, within CSW01_15925at 353.375 kb on + strand, within CSW01_15925at 353.375 kb on + strand, within CSW01_15925at 353.383 kb on - strand, within CSW01_15925at 353.385 kb on + strand, within CSW01_15925at 353.396 kb on + strand, within CSW01_15925at 353.440 kb on - strand, within CSW01_15925at 353.440 kb on - strand, within CSW01_15925at 353.510 kb on + strand, within CSW01_15925at 353.609 kb on + strand, within CSW01_15925at 353.727 kb on - strand, within CSW01_15925at 353.823 kb on + strand, within CSW01_15925

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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351,089 - CSW01_15910 0.13 -0.7
351,123 - CSW01_15910 0.19 -0.9
351,133 - CSW01_15910 0.20 -1.6
351,135 - CSW01_15910 0.21 +0.3
351,273 + CSW01_15910 0.44 +0.4
351,278 + CSW01_15910 0.45 -2.2
351,333 + CSW01_15910 0.54 +2.3
351,333 - CSW01_15910 0.54 -2.0
351,439 - CSW01_15910 0.71 +1.8
351,496 - CSW01_15910 0.81 +1.8
351,675 + -0.4
351,703 - +2.1
351,703 - +0.1
351,703 - +0.5
351,730 - -2.1
351,840 - -0.1
351,849 + -1.4
351,849 + +1.7
351,854 + +0.3
351,856 + -0.3
351,857 - +0.1
351,857 - +0.1
351,857 - -0.0
351,857 - +0.1
351,864 - +0.8
351,864 - -1.6
351,866 + -0.9
351,874 - -0.5
352,044 - CSW01_15915 0.16 +0.8
352,050 + CSW01_15915 0.17 +1.2
352,077 + CSW01_15915 0.20 +1.2
352,077 + CSW01_15915 0.20 -2.6
352,091 - CSW01_15915 0.21 -2.7
352,177 + CSW01_15915 0.31 -1.4
352,185 - CSW01_15915 0.32 -3.4
352,308 + CSW01_15915 0.45 -1.3
352,318 + CSW01_15915 0.46 -0.0
352,321 - CSW01_15915 0.46 +0.6
352,361 - CSW01_15915 0.50 +1.1
352,487 + CSW01_15915 0.64 +0.2
352,487 + CSW01_15915 0.64 -1.3
352,496 + CSW01_15915 0.65 +0.5
352,506 - CSW01_15915 0.66 +2.8
352,589 - CSW01_15915 0.75 +0.0
352,651 + CSW01_15915 0.81 +1.2
352,664 - CSW01_15915 0.83 +0.2
352,669 - CSW01_15915 0.83 -0.1
352,669 - CSW01_15915 0.83 +0.9
352,671 + CSW01_15915 0.83 +0.6
352,679 - CSW01_15915 0.84 -1.5
352,679 - CSW01_15915 0.84 +0.8
352,764 - +0.2
352,764 - +1.2
352,778 - -0.1
352,778 - -0.1
352,832 + CSW01_15920 0.29 +0.1
352,840 - CSW01_15920 0.35 +0.9
352,890 - CSW01_15920 0.70 -1.8
352,898 - CSW01_15920 0.76 +0.5
352,904 + CSW01_15920 0.80 -2.5
352,924 + +1.1
352,924 + -1.5
352,932 - +1.2
352,932 - -0.6
352,932 - -0.7
352,932 - -1.7
352,932 - +1.9
352,997 - +1.6
353,048 + -1.6
353,056 - -0.2
353,216 + CSW01_15925 0.17 +0.9
353,234 - CSW01_15925 0.19 -2.4
353,286 - CSW01_15925 0.24 -0.1
353,287 - CSW01_15925 0.24 +0.1
353,324 + CSW01_15925 0.27 -0.1
353,342 + CSW01_15925 0.29 -0.4
353,349 + CSW01_15925 0.30 -2.5
353,375 + CSW01_15925 0.32 -1.1
353,375 + CSW01_15925 0.32 +0.4
353,375 + CSW01_15925 0.32 -0.7
353,383 - CSW01_15925 0.33 -0.8
353,385 + CSW01_15925 0.33 -1.3
353,396 + CSW01_15925 0.35 +0.1
353,440 - CSW01_15925 0.39 -1.1
353,440 - CSW01_15925 0.39 -1.1
353,510 + CSW01_15925 0.46 +0.5
353,609 + CSW01_15925 0.55 -0.2
353,727 - CSW01_15925 0.67 +1.4
353,823 + CSW01_15925 0.76 +0.7

Or see this region's nucleotide sequence