Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15250

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15245 and CSW01_15250 are separated by 102 nucleotidesCSW01_15250 and CSW01_15255 are separated by 194 nucleotidesCSW01_15255 and CSW01_15260 are separated by 109 nucleotides CSW01_15245: CSW01_15245 - histidine kinase, at 276,540 to 277,994 _15245 CSW01_15250: CSW01_15250 - cupin domain-containing protein, at 278,097 to 278,609 _15250 CSW01_15255: CSW01_15255 - copper-binding protein, at 278,804 to 279,313 _15255 CSW01_15260: CSW01_15260 - hypothetical protein, at 279,423 to 279,833 _15260 Position (kb) 278 279Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 277.105 kb on - strand, within CSW01_15245at 277.105 kb on - strand, within CSW01_15245at 277.122 kb on - strand, within CSW01_15245at 277.124 kb on + strand, within CSW01_15245at 277.124 kb on + strand, within CSW01_15245at 277.124 kb on + strand, within CSW01_15245at 277.132 kb on - strand, within CSW01_15245at 277.132 kb on - strand, within CSW01_15245at 277.132 kb on - strand, within CSW01_15245at 277.166 kb on + strand, within CSW01_15245at 277.166 kb on + strand, within CSW01_15245at 277.166 kb on + strand, within CSW01_15245at 277.174 kb on - strand, within CSW01_15245at 277.174 kb on - strand, within CSW01_15245at 277.189 kb on - strand, within CSW01_15245at 277.199 kb on - strand, within CSW01_15245at 277.234 kb on + strand, within CSW01_15245at 277.234 kb on + strand, within CSW01_15245at 277.234 kb on + strand, within CSW01_15245at 277.242 kb on - strand, within CSW01_15245at 277.242 kb on - strand, within CSW01_15245at 277.242 kb on - strand, within CSW01_15245at 277.376 kb on + strand, within CSW01_15245at 277.441 kb on - strand, within CSW01_15245at 277.541 kb on + strand, within CSW01_15245at 277.556 kb on + strand, within CSW01_15245at 277.572 kb on + strand, within CSW01_15245at 277.574 kb on + strand, within CSW01_15245at 277.580 kb on - strand, within CSW01_15245at 277.580 kb on - strand, within CSW01_15245at 277.580 kb on - strand, within CSW01_15245at 277.580 kb on - strand, within CSW01_15245at 277.580 kb on - strand, within CSW01_15245at 277.619 kb on + strand, within CSW01_15245at 277.637 kb on + strand, within CSW01_15245at 277.637 kb on + strand, within CSW01_15245at 277.642 kb on + strand, within CSW01_15245at 277.738 kb on - strand, within CSW01_15245at 277.801 kb on + strand, within CSW01_15245at 277.801 kb on + strand, within CSW01_15245at 277.809 kb on - strand, within CSW01_15245at 277.809 kb on - strand, within CSW01_15245at 277.903 kb on + strandat 277.913 kb on + strandat 277.913 kb on + strandat 277.913 kb on + strandat 277.913 kb on + strandat 277.913 kb on + strandat 277.913 kb on + strandat 277.918 kb on + strandat 277.918 kb on + strandat 277.918 kb on + strandat 277.921 kb on - strandat 277.921 kb on - strandat 277.928 kb on + strandat 277.937 kb on - strandat 277.947 kb on - strandat 277.961 kb on + strandat 277.969 kb on - strandat 277.969 kb on - strandat 278.125 kb on - strandat 278.125 kb on - strandat 278.143 kb on + strandat 278.168 kb on + strand, within CSW01_15250at 278.178 kb on + strand, within CSW01_15250at 278.242 kb on + strand, within CSW01_15250at 278.243 kb on - strand, within CSW01_15250at 278.298 kb on + strand, within CSW01_15250at 278.311 kb on - strand, within CSW01_15250at 278.348 kb on + strand, within CSW01_15250at 278.353 kb on - strand, within CSW01_15250at 278.353 kb on - strand, within CSW01_15250at 278.384 kb on - strand, within CSW01_15250at 278.894 kb on + strand, within CSW01_15255at 278.925 kb on - strand, within CSW01_15255at 278.925 kb on - strand, within CSW01_15255at 278.925 kb on - strand, within CSW01_15255at 278.942 kb on + strand, within CSW01_15255at 279.078 kb on - strand, within CSW01_15255at 279.269 kb on - strandat 279.296 kb on - strandat 279.346 kb on - strandat 279.463 kb on - strandat 279.514 kb on - strand, within CSW01_15260at 279.608 kb on + strand, within CSW01_15260at 279.608 kb on + strand, within CSW01_15260at 279.608 kb on + strand, within CSW01_15260at 279.609 kb on - strand, within CSW01_15260

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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277,105 - CSW01_15245 0.39 +0.1
277,105 - CSW01_15245 0.39 -3.0
277,122 - CSW01_15245 0.40 +0.4
277,124 + CSW01_15245 0.40 -1.3
277,124 + CSW01_15245 0.40 -0.0
277,124 + CSW01_15245 0.40 -1.4
277,132 - CSW01_15245 0.41 -1.9
277,132 - CSW01_15245 0.41 +0.8
277,132 - CSW01_15245 0.41 +0.7
277,166 + CSW01_15245 0.43 -0.0
277,166 + CSW01_15245 0.43 -0.5
277,166 + CSW01_15245 0.43 +1.6
277,174 - CSW01_15245 0.44 -1.1
277,174 - CSW01_15245 0.44 +0.6
277,189 - CSW01_15245 0.45 +2.0
277,199 - CSW01_15245 0.45 +0.2
277,234 + CSW01_15245 0.48 +1.3
277,234 + CSW01_15245 0.48 -0.7
277,234 + CSW01_15245 0.48 -0.9
277,242 - CSW01_15245 0.48 +0.4
277,242 - CSW01_15245 0.48 +0.3
277,242 - CSW01_15245 0.48 +0.5
277,376 + CSW01_15245 0.57 +0.4
277,441 - CSW01_15245 0.62 +0.5
277,541 + CSW01_15245 0.69 +0.2
277,556 + CSW01_15245 0.70 -1.4
277,572 + CSW01_15245 0.71 +0.4
277,574 + CSW01_15245 0.71 +1.4
277,580 - CSW01_15245 0.71 -0.2
277,580 - CSW01_15245 0.71 -1.6
277,580 - CSW01_15245 0.71 -2.0
277,580 - CSW01_15245 0.71 +0.7
277,580 - CSW01_15245 0.71 +0.7
277,619 + CSW01_15245 0.74 +0.5
277,637 + CSW01_15245 0.75 -0.7
277,637 + CSW01_15245 0.75 +0.5
277,642 + CSW01_15245 0.76 +1.3
277,738 - CSW01_15245 0.82 +1.0
277,801 + CSW01_15245 0.87 -0.4
277,801 + CSW01_15245 0.87 +1.0
277,809 - CSW01_15245 0.87 -1.3
277,809 - CSW01_15245 0.87 +1.1
277,903 + -0.9
277,913 + +3.0
277,913 + -0.2
277,913 + -0.5
277,913 + -2.4
277,913 + -2.1
277,913 + +1.7
277,918 + -0.5
277,918 + -2.5
277,918 + -0.5
277,921 - -0.6
277,921 - -0.3
277,928 + -0.8
277,937 - +1.1
277,947 - +0.3
277,961 + +0.1
277,969 - +2.5
277,969 - -0.2
278,125 - +1.0
278,125 - -0.1
278,143 + -0.2
278,168 + CSW01_15250 0.14 -1.1
278,178 + CSW01_15250 0.16 -1.1
278,242 + CSW01_15250 0.28 +0.3
278,243 - CSW01_15250 0.28 +0.6
278,298 + CSW01_15250 0.39 +0.7
278,311 - CSW01_15250 0.42 +0.5
278,348 + CSW01_15250 0.49 -0.3
278,353 - CSW01_15250 0.50 -1.9
278,353 - CSW01_15250 0.50 +0.1
278,384 - CSW01_15250 0.56 -0.7
278,894 + CSW01_15255 0.18 +0.1
278,925 - CSW01_15255 0.24 +0.3
278,925 - CSW01_15255 0.24 +1.6
278,925 - CSW01_15255 0.24 -0.0
278,942 + CSW01_15255 0.27 -0.0
279,078 - CSW01_15255 0.54 +2.4
279,269 - +0.8
279,296 - +0.1
279,346 - -1.2
279,463 - -1.7
279,514 - CSW01_15260 0.22 -1.1
279,608 + CSW01_15260 0.45 +0.6
279,608 + CSW01_15260 0.45 -1.6
279,608 + CSW01_15260 0.45 -0.0
279,609 - CSW01_15260 0.45 -0.4

Or see this region's nucleotide sequence