Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15235

Experiment: ICP1_phage_235.3_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_15230 and CSW01_15235 are separated by 88 nucleotidesCSW01_15235 and CSW01_15240 overlap by 4 nucleotidesCSW01_15240 and CSW01_15245 overlap by 25 nucleotides CSW01_15230: CSW01_15230 - glycosyl hydrolase, at 272,811 to 274,977 _15230 CSW01_15235: CSW01_15235 - DUF2861 domain-containing protein, at 275,066 to 275,896 _15235 CSW01_15240: CSW01_15240 - DNA-binding response regulator, at 275,893 to 276,564 _15240 CSW01_15245: CSW01_15245 - histidine kinase, at 276,540 to 277,994 _15245 Position (kb) 275 276Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 274.108 kb on + strand, within CSW01_15230at 274.113 kb on + strand, within CSW01_15230at 274.148 kb on - strand, within CSW01_15230at 274.152 kb on - strand, within CSW01_15230at 274.159 kb on + strand, within CSW01_15230at 274.167 kb on - strand, within CSW01_15230at 274.167 kb on - strand, within CSW01_15230at 274.238 kb on - strand, within CSW01_15230at 274.365 kb on + strand, within CSW01_15230at 274.365 kb on + strand, within CSW01_15230at 274.365 kb on + strand, within CSW01_15230at 274.365 kb on + strand, within CSW01_15230at 274.370 kb on + strand, within CSW01_15230at 274.444 kb on - strand, within CSW01_15230at 274.446 kb on + strand, within CSW01_15230at 274.446 kb on + strand, within CSW01_15230at 274.446 kb on + strand, within CSW01_15230at 274.446 kb on + strand, within CSW01_15230at 274.454 kb on - strand, within CSW01_15230at 274.454 kb on - strand, within CSW01_15230at 274.489 kb on - strand, within CSW01_15230at 274.489 kb on - strand, within CSW01_15230at 274.626 kb on + strand, within CSW01_15230at 274.634 kb on - strand, within CSW01_15230at 274.634 kb on - strand, within CSW01_15230at 274.634 kb on - strand, within CSW01_15230at 274.634 kb on - strand, within CSW01_15230at 274.634 kb on - strand, within CSW01_15230at 274.668 kb on + strand, within CSW01_15230at 274.668 kb on + strand, within CSW01_15230at 274.723 kb on + strand, within CSW01_15230at 274.740 kb on + strand, within CSW01_15230at 274.755 kb on - strand, within CSW01_15230at 274.817 kb on - strandat 274.877 kb on + strandat 274.891 kb on + strandat 274.893 kb on + strandat 274.905 kb on + strandat 274.905 kb on + strandat 274.913 kb on - strandat 274.913 kb on - strandat 274.913 kb on - strandat 274.913 kb on - strandat 274.913 kb on - strandat 274.913 kb on - strandat 274.925 kb on - strandat 274.932 kb on - strandat 274.932 kb on - strandat 274.986 kb on + strandat 275.000 kb on - strandat 275.139 kb on - strandat 275.143 kb on + strandat 275.151 kb on - strand, within CSW01_15235at 275.151 kb on - strand, within CSW01_15235at 275.166 kb on - strand, within CSW01_15235at 275.221 kb on + strand, within CSW01_15235at 275.270 kb on + strand, within CSW01_15235at 275.270 kb on + strand, within CSW01_15235at 275.270 kb on + strand, within CSW01_15235at 275.278 kb on - strand, within CSW01_15235at 275.323 kb on - strand, within CSW01_15235at 275.332 kb on - strand, within CSW01_15235at 275.361 kb on + strand, within CSW01_15235at 275.473 kb on + strand, within CSW01_15235at 275.473 kb on + strand, within CSW01_15235at 275.474 kb on + strand, within CSW01_15235at 275.481 kb on - strand, within CSW01_15235at 275.577 kb on + strand, within CSW01_15235at 275.618 kb on + strand, within CSW01_15235at 275.704 kb on + strand, within CSW01_15235at 275.714 kb on - strand, within CSW01_15235at 275.714 kb on - strand, within CSW01_15235at 275.906 kb on + strandat 275.993 kb on - strand, within CSW01_15240at 276.029 kb on + strand, within CSW01_15240at 276.037 kb on - strand, within CSW01_15240at 276.098 kb on - strand, within CSW01_15240at 276.120 kb on + strand, within CSW01_15240at 276.130 kb on + strand, within CSW01_15240at 276.143 kb on - strand, within CSW01_15240at 276.183 kb on + strand, within CSW01_15240at 276.244 kb on + strand, within CSW01_15240at 276.280 kb on - strand, within CSW01_15240at 276.335 kb on + strand, within CSW01_15240at 276.343 kb on - strand, within CSW01_15240at 276.371 kb on - strand, within CSW01_15240at 276.447 kb on + strand, within CSW01_15240at 276.455 kb on - strand, within CSW01_15240at 276.495 kb on + strand, within CSW01_15240at 276.495 kb on + strand, within CSW01_15240at 276.495 kb on + strand, within CSW01_15240at 276.495 kb on + strand, within CSW01_15240at 276.505 kb on - strandat 276.574 kb on - strandat 276.580 kb on + strandat 276.627 kb on + strandat 276.627 kb on + strandat 276.662 kb on - strandat 276.672 kb on + strandat 276.711 kb on - strand, within CSW01_15245at 276.732 kb on + strand, within CSW01_15245at 276.748 kb on - strand, within CSW01_15245at 276.758 kb on + strand, within CSW01_15245at 276.771 kb on - strand, within CSW01_15245at 276.836 kb on + strand, within CSW01_15245at 276.836 kb on + strand, within CSW01_15245at 276.836 kb on + strand, within CSW01_15245at 276.844 kb on - strand, within CSW01_15245at 276.844 kb on - strand, within CSW01_15245at 276.844 kb on - strand, within CSW01_15245at 276.844 kb on - strand, within CSW01_15245at 276.844 kb on - strand, within CSW01_15245at 276.863 kb on + strand, within CSW01_15245at 276.880 kb on + strand, within CSW01_15245at 276.886 kb on + strand, within CSW01_15245

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
remove
274,108 + CSW01_15230 0.60 -0.4
274,113 + CSW01_15230 0.60 +0.6
274,148 - CSW01_15230 0.62 -1.5
274,152 - CSW01_15230 0.62 +0.8
274,159 + CSW01_15230 0.62 +1.3
274,167 - CSW01_15230 0.63 -1.0
274,167 - CSW01_15230 0.63 +0.1
274,238 - CSW01_15230 0.66 +0.3
274,365 + CSW01_15230 0.72 -2.4
274,365 + CSW01_15230 0.72 -1.3
274,365 + CSW01_15230 0.72 -1.4
274,365 + CSW01_15230 0.72 +0.2
274,370 + CSW01_15230 0.72 -0.2
274,444 - CSW01_15230 0.75 +1.0
274,446 + CSW01_15230 0.75 -0.3
274,446 + CSW01_15230 0.75 -1.2
274,446 + CSW01_15230 0.75 -1.3
274,446 + CSW01_15230 0.75 -2.8
274,454 - CSW01_15230 0.76 +0.9
274,454 - CSW01_15230 0.76 -0.3
274,489 - CSW01_15230 0.77 -0.4
274,489 - CSW01_15230 0.77 -0.0
274,626 + CSW01_15230 0.84 +0.4
274,634 - CSW01_15230 0.84 -3.2
274,634 - CSW01_15230 0.84 +0.8
274,634 - CSW01_15230 0.84 -0.9
274,634 - CSW01_15230 0.84 +0.1
274,634 - CSW01_15230 0.84 -2.4
274,668 + CSW01_15230 0.86 -1.5
274,668 + CSW01_15230 0.86 +1.7
274,723 + CSW01_15230 0.88 +1.1
274,740 + CSW01_15230 0.89 -0.9
274,755 - CSW01_15230 0.90 +1.0
274,817 - +0.1
274,877 + +0.2
274,891 + +1.5
274,893 + -1.0
274,905 + +0.5
274,905 + -0.4
274,913 - -2.3
274,913 - -3.4
274,913 - +0.5
274,913 - -0.8
274,913 - -1.3
274,913 - +1.2
274,925 - +0.6
274,932 - +1.2
274,932 - -1.9
274,986 + +1.2
275,000 - -0.2
275,139 - -0.9
275,143 + -1.4
275,151 - CSW01_15235 0.10 +0.5
275,151 - CSW01_15235 0.10 -0.9
275,166 - CSW01_15235 0.12 -0.9
275,221 + CSW01_15235 0.19 +0.7
275,270 + CSW01_15235 0.25 +0.4
275,270 + CSW01_15235 0.25 -0.4
275,270 + CSW01_15235 0.25 +0.6
275,278 - CSW01_15235 0.26 -1.1
275,323 - CSW01_15235 0.31 -3.1
275,332 - CSW01_15235 0.32 +1.0
275,361 + CSW01_15235 0.35 -0.1
275,473 + CSW01_15235 0.49 -0.9
275,473 + CSW01_15235 0.49 +0.7
275,474 + CSW01_15235 0.49 -0.1
275,481 - CSW01_15235 0.50 -0.8
275,577 + CSW01_15235 0.61 -0.9
275,618 + CSW01_15235 0.66 +0.3
275,704 + CSW01_15235 0.77 -0.7
275,714 - CSW01_15235 0.78 -2.1
275,714 - CSW01_15235 0.78 +0.5
275,906 + -1.7
275,993 - CSW01_15240 0.15 +0.5
276,029 + CSW01_15240 0.20 +0.5
276,037 - CSW01_15240 0.21 -1.1
276,098 - CSW01_15240 0.31 +0.6
276,120 + CSW01_15240 0.34 -0.4
276,130 + CSW01_15240 0.35 +0.3
276,143 - CSW01_15240 0.37 +0.4
276,183 + CSW01_15240 0.43 -0.6
276,244 + CSW01_15240 0.52 -1.8
276,280 - CSW01_15240 0.58 +0.3
276,335 + CSW01_15240 0.66 -1.8
276,343 - CSW01_15240 0.67 -0.1
276,371 - CSW01_15240 0.71 +1.4
276,447 + CSW01_15240 0.82 +1.4
276,455 - CSW01_15240 0.84 -0.0
276,495 + CSW01_15240 0.90 -2.6
276,495 + CSW01_15240 0.90 -1.0
276,495 + CSW01_15240 0.90 +0.5
276,495 + CSW01_15240 0.90 +0.1
276,505 - -0.8
276,574 - +0.3
276,580 + -1.0
276,627 + -0.5
276,627 + +0.5
276,662 - -0.7
276,672 + -0.5
276,711 - CSW01_15245 0.12 +0.0
276,732 + CSW01_15245 0.13 +2.2
276,748 - CSW01_15245 0.14 +1.0
276,758 + CSW01_15245 0.15 -0.3
276,771 - CSW01_15245 0.16 -2.3
276,836 + CSW01_15245 0.20 -2.3
276,836 + CSW01_15245 0.20 +1.1
276,836 + CSW01_15245 0.20 -0.7
276,844 - CSW01_15245 0.21 +1.8
276,844 - CSW01_15245 0.21 +1.0
276,844 - CSW01_15245 0.21 +0.5
276,844 - CSW01_15245 0.21 +0.7
276,844 - CSW01_15245 0.21 -0.0
276,863 + CSW01_15245 0.22 +1.9
276,880 + CSW01_15245 0.23 +1.4
276,886 + CSW01_15245 0.24 +2.3

Or see this region's nucleotide sequence