Experiment: ICP1_phage_235.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15200 and CSW01_15205 are separated by 365 nucleotides CSW01_15205 and CSW01_15210 are separated by 126 nucleotides
CSW01_15200: CSW01_15200 - PTS ascorbate transporter subunit IIC, at 265,315 to 267,075
_15200
CSW01_15205: CSW01_15205 - HTH-type transcriptional regulator UlaR, at 267,441 to 268,196
_15205
CSW01_15210: CSW01_15210 - L-ascorbate 6-phosphate lactonase, at 268,323 to 269,390
_15210
Position (kb) 267
268
269 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 266.490 kb on + strand, within CSW01_15200 at 266.564 kb on + strand, within CSW01_15200 at 266.621 kb on - strand, within CSW01_15200 at 266.630 kb on + strand, within CSW01_15200 at 266.638 kb on - strand, within CSW01_15200 at 266.671 kb on - strand, within CSW01_15200 at 266.705 kb on - strand, within CSW01_15200 at 266.813 kb on + strand, within CSW01_15200 at 266.821 kb on - strand, within CSW01_15200 at 266.873 kb on + strand, within CSW01_15200 at 266.987 kb on - strand at 267.072 kb on + strand at 267.077 kb on + strand at 267.077 kb on + strand at 267.077 kb on + strand at 267.077 kb on + strand at 267.077 kb on + strand at 267.085 kb on - strand at 267.085 kb on - strand at 267.612 kb on - strand, within CSW01_15205 at 267.653 kb on + strand, within CSW01_15205 at 267.666 kb on - strand, within CSW01_15205 at 267.671 kb on - strand, within CSW01_15205 at 267.700 kb on + strand, within CSW01_15205 at 267.739 kb on + strand, within CSW01_15205 at 267.740 kb on - strand, within CSW01_15205 at 267.870 kb on + strand, within CSW01_15205 at 267.870 kb on + strand, within CSW01_15205 at 267.877 kb on + strand, within CSW01_15205 at 267.889 kb on + strand, within CSW01_15205 at 267.904 kb on - strand, within CSW01_15205 at 267.975 kb on + strand, within CSW01_15205 at 267.983 kb on - strand, within CSW01_15205 at 268.021 kb on + strand, within CSW01_15205 at 268.024 kb on - strand, within CSW01_15205 at 268.050 kb on + strand, within CSW01_15205 at 268.058 kb on - strand, within CSW01_15205 at 268.058 kb on - strand, within CSW01_15205 at 268.058 kb on - strand, within CSW01_15205 at 268.060 kb on + strand, within CSW01_15205 at 268.084 kb on - strand, within CSW01_15205 at 268.084 kb on - strand, within CSW01_15205 at 268.091 kb on + strand, within CSW01_15205 at 268.099 kb on - strand, within CSW01_15205 at 268.118 kb on + strand, within CSW01_15205 at 268.252 kb on - strand at 268.252 kb on - strand at 268.260 kb on - strand at 268.323 kb on - strand at 268.559 kb on + strand, within CSW01_15210 at 268.582 kb on + strand, within CSW01_15210 at 268.590 kb on - strand, within CSW01_15210 at 268.667 kb on - strand, within CSW01_15210 at 268.671 kb on + strand, within CSW01_15210 at 268.788 kb on + strand, within CSW01_15210 at 268.807 kb on - strand, within CSW01_15210 at 268.881 kb on - strand, within CSW01_15210 at 268.936 kb on + strand, within CSW01_15210 at 268.936 kb on + strand, within CSW01_15210 at 268.944 kb on - strand, within CSW01_15210 at 268.986 kb on + strand, within CSW01_15210 at 268.994 kb on - strand, within CSW01_15210 at 268.994 kb on - strand, within CSW01_15210 at 269.028 kb on + strand, within CSW01_15210 at 269.055 kb on - strand, within CSW01_15210 at 269.128 kb on + strand, within CSW01_15210
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1 remove 266,490 + CSW01_15200 0.67 -0.3 266,564 + CSW01_15200 0.71 -0.9 266,621 - CSW01_15200 0.74 -0.7 266,630 + CSW01_15200 0.75 -0.4 266,638 - CSW01_15200 0.75 -2.5 266,671 - CSW01_15200 0.77 -0.1 266,705 - CSW01_15200 0.79 -1.3 266,813 + CSW01_15200 0.85 +0.5 266,821 - CSW01_15200 0.86 -0.6 266,873 + CSW01_15200 0.88 -1.8 266,987 - -0.0 267,072 + +1.9 267,077 + +0.2 267,077 + +0.0 267,077 + +0.7 267,077 + +1.0 267,077 + -0.9 267,085 - +0.8 267,085 - +0.7 267,612 - CSW01_15205 0.23 -3.2 267,653 + CSW01_15205 0.28 +1.3 267,666 - CSW01_15205 0.30 -0.3 267,671 - CSW01_15205 0.30 -0.7 267,700 + CSW01_15205 0.34 -1.0 267,739 + CSW01_15205 0.39 -1.1 267,740 - CSW01_15205 0.40 -1.6 267,870 + CSW01_15205 0.57 -1.3 267,870 + CSW01_15205 0.57 +0.2 267,877 + CSW01_15205 0.58 -1.0 267,889 + CSW01_15205 0.59 +0.3 267,904 - CSW01_15205 0.61 -0.6 267,975 + CSW01_15205 0.71 +1.6 267,983 - CSW01_15205 0.72 -1.9 268,021 + CSW01_15205 0.77 -0.0 268,024 - CSW01_15205 0.77 -2.0 268,050 + CSW01_15205 0.81 -1.6 268,058 - CSW01_15205 0.82 -0.4 268,058 - CSW01_15205 0.82 -2.6 268,058 - CSW01_15205 0.82 -0.7 268,060 + CSW01_15205 0.82 -0.3 268,084 - CSW01_15205 0.85 -1.2 268,084 - CSW01_15205 0.85 -1.5 268,091 + CSW01_15205 0.86 +0.6 268,099 - CSW01_15205 0.87 -1.8 268,118 + CSW01_15205 0.90 +0.6 268,252 - +0.3 268,252 - +0.0 268,260 - -0.0 268,323 - +0.6 268,559 + CSW01_15210 0.22 -0.3 268,582 + CSW01_15210 0.24 +0.8 268,590 - CSW01_15210 0.25 -1.5 268,667 - CSW01_15210 0.32 -0.7 268,671 + CSW01_15210 0.33 +0.2 268,788 + CSW01_15210 0.44 -1.6 268,807 - CSW01_15210 0.45 -1.8 268,881 - CSW01_15210 0.52 +0.7 268,936 + CSW01_15210 0.57 -1.3 268,936 + CSW01_15210 0.57 +1.0 268,944 - CSW01_15210 0.58 -1.4 268,986 + CSW01_15210 0.62 -0.1 268,994 - CSW01_15210 0.63 +1.4 268,994 - CSW01_15210 0.63 -0.9 269,028 + CSW01_15210 0.66 +1.5 269,055 - CSW01_15210 0.69 -1.3 269,128 + CSW01_15210 0.75 -0.6
Or see this region's nucleotide sequence