Experiment: ICP1_phage_235.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15120 and CSW01_15125 are separated by 2 nucleotides CSW01_15125 and CSW01_15130 are separated by 45 nucleotides CSW01_15130 and CSW01_15135 are separated by 26 nucleotides
CSW01_15120: CSW01_15120 - iron(III) ABC transporter permease, at 250,743 to 251,693
_15120
CSW01_15125: CSW01_15125 - iron(III) ABC transporter ATP-binding protein, at 251,696 to 252,460
_15125
CSW01_15130: CSW01_15130 - AraC family transcriptional regulator, at 252,506 to 253,582
_15130
CSW01_15135: CSW01_15135 - TonB-dependent siderophore receptor, at 253,609 to 255,588
_15135
Position (kb) 252
253
254 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 251.579 kb on - strand, within CSW01_15120 at 251.628 kb on - strand at 251.659 kb on - strand at 251.742 kb on + strand at 251.774 kb on + strand, within CSW01_15125 at 251.774 kb on + strand, within CSW01_15125 at 251.782 kb on - strand, within CSW01_15125 at 251.879 kb on - strand, within CSW01_15125 at 251.902 kb on - strand, within CSW01_15125 at 251.938 kb on - strand, within CSW01_15125 at 251.948 kb on - strand, within CSW01_15125 at 252.258 kb on - strand, within CSW01_15125 at 252.449 kb on + strand at 252.586 kb on + strand at 252.616 kb on + strand, within CSW01_15130 at 252.625 kb on + strand, within CSW01_15130 at 252.826 kb on + strand, within CSW01_15130 at 252.836 kb on + strand, within CSW01_15130 at 252.876 kb on - strand, within CSW01_15130 at 252.898 kb on - strand, within CSW01_15130 at 252.967 kb on - strand, within CSW01_15130 at 253.013 kb on - strand, within CSW01_15130 at 253.017 kb on + strand, within CSW01_15130 at 253.047 kb on + strand, within CSW01_15130 at 253.077 kb on + strand, within CSW01_15130 at 253.085 kb on - strand, within CSW01_15130 at 253.143 kb on + strand, within CSW01_15130 at 253.234 kb on - strand, within CSW01_15130 at 253.308 kb on - strand, within CSW01_15130 at 253.351 kb on - strand, within CSW01_15130 at 253.445 kb on + strand, within CSW01_15130 at 253.478 kb on + strand at 253.481 kb on - strand at 253.657 kb on + strand at 253.657 kb on + strand at 253.713 kb on + strand at 253.872 kb on + strand, within CSW01_15135 at 253.912 kb on - strand, within CSW01_15135 at 253.951 kb on - strand, within CSW01_15135 at 254.079 kb on + strand, within CSW01_15135 at 254.190 kb on - strand, within CSW01_15135 at 254.252 kb on + strand, within CSW01_15135 at 254.260 kb on - strand, within CSW01_15135 at 254.260 kb on - strand, within CSW01_15135 at 254.276 kb on + strand, within CSW01_15135 at 254.383 kb on - strand, within CSW01_15135 at 254.473 kb on - strand, within CSW01_15135 at 254.479 kb on - strand, within CSW01_15135 at 254.578 kb on - strand, within CSW01_15135
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1 remove 251,579 - CSW01_15120 0.88 +0.1 251,628 - +1.3 251,659 - +0.8 251,742 + -0.3 251,774 + CSW01_15125 0.10 +0.9 251,774 + CSW01_15125 0.10 +1.0 251,782 - CSW01_15125 0.11 -0.7 251,879 - CSW01_15125 0.24 -2.5 251,902 - CSW01_15125 0.27 -0.5 251,938 - CSW01_15125 0.32 -0.3 251,948 - CSW01_15125 0.33 -0.4 252,258 - CSW01_15125 0.73 -0.5 252,449 + -0.6 252,586 + -1.0 252,616 + CSW01_15130 0.10 +0.1 252,625 + CSW01_15130 0.11 +0.8 252,826 + CSW01_15130 0.30 -1.0 252,836 + CSW01_15130 0.31 +0.2 252,876 - CSW01_15130 0.34 +1.0 252,898 - CSW01_15130 0.36 -0.7 252,967 - CSW01_15130 0.43 +1.4 253,013 - CSW01_15130 0.47 -1.1 253,017 + CSW01_15130 0.47 +0.2 253,047 + CSW01_15130 0.50 -0.4 253,077 + CSW01_15130 0.53 -1.8 253,085 - CSW01_15130 0.54 -1.9 253,143 + CSW01_15130 0.59 -0.5 253,234 - CSW01_15130 0.68 -0.6 253,308 - CSW01_15130 0.74 -2.5 253,351 - CSW01_15130 0.78 +0.1 253,445 + CSW01_15130 0.87 +0.4 253,478 + -0.9 253,481 - +0.1 253,657 + -1.3 253,657 + -1.1 253,713 + +1.1 253,872 + CSW01_15135 0.13 +0.5 253,912 - CSW01_15135 0.15 -3.2 253,951 - CSW01_15135 0.17 +1.1 254,079 + CSW01_15135 0.24 -0.9 254,190 - CSW01_15135 0.29 +0.1 254,252 + CSW01_15135 0.32 -2.2 254,260 - CSW01_15135 0.33 -1.7 254,260 - CSW01_15135 0.33 -1.8 254,276 + CSW01_15135 0.34 -1.4 254,383 - CSW01_15135 0.39 +0.5 254,473 - CSW01_15135 0.44 -0.0 254,479 - CSW01_15135 0.44 -2.1 254,578 - CSW01_15135 0.49 -0.0
Or see this region's nucleotide sequence