Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14940

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14930 and CSW01_14935 overlap by 1 nucleotidesCSW01_14935 and CSW01_14940 are separated by 37 nucleotidesCSW01_14940 and CSW01_14945 overlap by 12 nucleotides CSW01_14930: CSW01_14930 - response regulator, at 205,604 to 206,608 _14930 CSW01_14935: CSW01_14935 - hypothetical protein, at 206,608 to 207,054 _14935 CSW01_14940: CSW01_14940 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 207,092 to 208,576 _14940 CSW01_14945: CSW01_14945 - 2-hydroxyacid dehydrogenase, at 208,565 to 209,560 _14945 Position (kb) 207 208 209Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 206.105 kb on + strand, within CSW01_14930at 206.119 kb on - strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.138 kb on - strand, within CSW01_14930at 206.138 kb on - strand, within CSW01_14930at 206.138 kb on - strand, within CSW01_14930at 206.138 kb on - strand, within CSW01_14930at 206.138 kb on - strand, within CSW01_14930at 206.159 kb on - strand, within CSW01_14930at 206.193 kb on - strand, within CSW01_14930at 206.242 kb on - strand, within CSW01_14930at 206.253 kb on + strand, within CSW01_14930at 206.315 kb on + strand, within CSW01_14930at 206.324 kb on - strand, within CSW01_14930at 206.377 kb on - strand, within CSW01_14930at 206.378 kb on - strand, within CSW01_14930at 206.487 kb on + strand, within CSW01_14930at 206.487 kb on + strand, within CSW01_14930at 206.488 kb on - strand, within CSW01_14930at 206.495 kb on - strand, within CSW01_14930at 206.602 kb on + strandat 206.610 kb on - strandat 206.610 kb on - strandat 206.621 kb on - strandat 206.732 kb on - strand, within CSW01_14935at 206.744 kb on - strand, within CSW01_14935at 206.894 kb on + strand, within CSW01_14935at 206.956 kb on - strand, within CSW01_14935at 206.957 kb on - strand, within CSW01_14935at 207.099 kb on + strandat 207.099 kb on + strandat 207.099 kb on - strandat 207.129 kb on + strandat 207.185 kb on - strandat 207.185 kb on - strandat 207.249 kb on - strand, within CSW01_14940at 207.322 kb on - strand, within CSW01_14940at 207.413 kb on + strand, within CSW01_14940at 207.413 kb on + strand, within CSW01_14940at 207.434 kb on + strand, within CSW01_14940at 207.435 kb on - strand, within CSW01_14940at 207.440 kb on - strand, within CSW01_14940at 207.442 kb on + strand, within CSW01_14940at 207.449 kb on - strand, within CSW01_14940at 207.492 kb on - strand, within CSW01_14940at 207.540 kb on - strand, within CSW01_14940at 207.590 kb on - strand, within CSW01_14940at 207.648 kb on - strand, within CSW01_14940at 207.657 kb on + strand, within CSW01_14940at 207.670 kb on - strand, within CSW01_14940at 207.705 kb on + strand, within CSW01_14940at 207.712 kb on - strand, within CSW01_14940at 207.712 kb on - strand, within CSW01_14940at 207.712 kb on - strand, within CSW01_14940at 207.720 kb on + strand, within CSW01_14940at 207.756 kb on - strand, within CSW01_14940at 207.756 kb on - strand, within CSW01_14940at 207.791 kb on - strand, within CSW01_14940at 207.822 kb on - strand, within CSW01_14940at 207.853 kb on - strand, within CSW01_14940at 207.868 kb on + strand, within CSW01_14940at 207.896 kb on + strand, within CSW01_14940at 207.921 kb on - strand, within CSW01_14940at 207.923 kb on + strand, within CSW01_14940at 207.926 kb on - strand, within CSW01_14940at 207.931 kb on - strand, within CSW01_14940at 207.931 kb on - strand, within CSW01_14940at 207.933 kb on + strand, within CSW01_14940at 207.935 kb on + strand, within CSW01_14940at 207.948 kb on + strand, within CSW01_14940at 207.973 kb on - strand, within CSW01_14940at 208.041 kb on + strand, within CSW01_14940at 208.046 kb on - strand, within CSW01_14940at 208.079 kb on - strand, within CSW01_14940at 208.113 kb on + strand, within CSW01_14940at 208.148 kb on - strand, within CSW01_14940at 208.176 kb on + strand, within CSW01_14940at 208.317 kb on - strand, within CSW01_14940at 208.359 kb on + strand, within CSW01_14940at 208.359 kb on + strand, within CSW01_14940at 208.445 kb on + strandat 208.483 kb on + strandat 208.483 kb on + strandat 208.483 kb on + strandat 208.483 kb on + strandat 208.491 kb on - strandat 208.491 kb on - strandat 208.537 kb on - strandat 208.677 kb on + strand, within CSW01_14945at 208.791 kb on - strand, within CSW01_14945at 208.791 kb on - strand, within CSW01_14945at 208.791 kb on - strand, within CSW01_14945at 208.821 kb on + strand, within CSW01_14945at 208.954 kb on - strand, within CSW01_14945at 208.959 kb on + strand, within CSW01_14945at 208.964 kb on + strand, within CSW01_14945at 208.967 kb on - strand, within CSW01_14945at 208.978 kb on + strand, within CSW01_14945at 208.987 kb on + strand, within CSW01_14945at 208.987 kb on + strand, within CSW01_14945at 208.987 kb on + strand, within CSW01_14945at 208.987 kb on + strand, within CSW01_14945at 208.987 kb on + strand, within CSW01_14945at 208.987 kb on + strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 209.006 kb on - strand, within CSW01_14945at 209.035 kb on + strand, within CSW01_14945at 209.043 kb on - strand, within CSW01_14945at 209.048 kb on + strand, within CSW01_14945at 209.142 kb on - strand, within CSW01_14945at 209.150 kb on + strand, within CSW01_14945at 209.323 kb on + strand, within CSW01_14945at 209.336 kb on - strand, within CSW01_14945at 209.336 kb on - strand, within CSW01_14945at 209.341 kb on - strand, within CSW01_14945at 209.361 kb on + strand, within CSW01_14945at 209.361 kb on + strand, within CSW01_14945at 209.369 kb on - strand, within CSW01_14945at 209.369 kb on - strand, within CSW01_14945at 209.379 kb on + strand, within CSW01_14945at 209.417 kb on - strand, within CSW01_14945at 209.493 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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206,105 + CSW01_14930 0.50 +0.6
206,119 - CSW01_14930 0.51 +1.1
206,130 + CSW01_14930 0.52 -0.3
206,130 + CSW01_14930 0.52 +0.5
206,130 + CSW01_14930 0.52 -0.8
206,130 + CSW01_14930 0.52 -0.7
206,130 + CSW01_14930 0.52 -1.3
206,130 + CSW01_14930 0.52 -1.9
206,130 + CSW01_14930 0.52 -2.7
206,130 + CSW01_14930 0.52 +1.0
206,130 + CSW01_14930 0.52 -2.3
206,130 + CSW01_14930 0.52 +0.3
206,138 - CSW01_14930 0.53 +1.0
206,138 - CSW01_14930 0.53 +0.9
206,138 - CSW01_14930 0.53 -0.2
206,138 - CSW01_14930 0.53 +0.5
206,138 - CSW01_14930 0.53 -2.1
206,159 - CSW01_14930 0.55 +0.1
206,193 - CSW01_14930 0.59 +1.6
206,242 - CSW01_14930 0.63 +1.7
206,253 + CSW01_14930 0.65 +0.3
206,315 + CSW01_14930 0.71 -0.7
206,324 - CSW01_14930 0.72 -1.1
206,377 - CSW01_14930 0.77 +2.1
206,378 - CSW01_14930 0.77 -1.0
206,487 + CSW01_14930 0.88 -0.9
206,487 + CSW01_14930 0.88 +0.4
206,488 - CSW01_14930 0.88 +0.2
206,495 - CSW01_14930 0.89 +0.5
206,602 + +0.7
206,610 - +0.3
206,610 - +0.9
206,621 - -1.9
206,732 - CSW01_14935 0.28 +0.3
206,744 - CSW01_14935 0.30 -2.6
206,894 + CSW01_14935 0.64 -1.2
206,956 - CSW01_14935 0.78 -1.5
206,957 - CSW01_14935 0.78 +0.2
207,099 + +1.0
207,099 + -0.8
207,099 - -0.2
207,129 + +0.3
207,185 - -0.8
207,185 - +1.0
207,249 - CSW01_14940 0.11 +0.3
207,322 - CSW01_14940 0.15 +0.3
207,413 + CSW01_14940 0.22 -3.4
207,413 + CSW01_14940 0.22 -1.6
207,434 + CSW01_14940 0.23 -1.6
207,435 - CSW01_14940 0.23 -2.7
207,440 - CSW01_14940 0.23 +1.5
207,442 + CSW01_14940 0.24 +0.1
207,449 - CSW01_14940 0.24 -0.6
207,492 - CSW01_14940 0.27 +1.2
207,540 - CSW01_14940 0.30 +0.5
207,590 - CSW01_14940 0.34 +1.0
207,648 - CSW01_14940 0.37 -0.9
207,657 + CSW01_14940 0.38 +0.7
207,670 - CSW01_14940 0.39 +0.6
207,705 + CSW01_14940 0.41 -2.0
207,712 - CSW01_14940 0.42 +0.5
207,712 - CSW01_14940 0.42 -0.2
207,712 - CSW01_14940 0.42 -2.0
207,720 + CSW01_14940 0.42 -0.9
207,756 - CSW01_14940 0.45 -1.8
207,756 - CSW01_14940 0.45 -1.3
207,791 - CSW01_14940 0.47 +0.6
207,822 - CSW01_14940 0.49 +0.3
207,853 - CSW01_14940 0.51 +0.7
207,868 + CSW01_14940 0.52 -3.3
207,896 + CSW01_14940 0.54 +0.7
207,921 - CSW01_14940 0.56 -1.9
207,923 + CSW01_14940 0.56 -1.6
207,926 - CSW01_14940 0.56 +0.0
207,931 - CSW01_14940 0.56 +1.7
207,931 - CSW01_14940 0.56 +1.0
207,933 + CSW01_14940 0.57 +1.2
207,935 + CSW01_14940 0.57 +0.7
207,948 + CSW01_14940 0.58 -2.2
207,973 - CSW01_14940 0.59 +0.9
208,041 + CSW01_14940 0.64 +0.4
208,046 - CSW01_14940 0.64 +0.6
208,079 - CSW01_14940 0.66 -2.6
208,113 + CSW01_14940 0.69 -0.1
208,148 - CSW01_14940 0.71 +0.7
208,176 + CSW01_14940 0.73 -2.5
208,317 - CSW01_14940 0.82 +1.0
208,359 + CSW01_14940 0.85 -2.7
208,359 + CSW01_14940 0.85 +0.6
208,445 + -1.7
208,483 + -0.9
208,483 + -1.9
208,483 + +0.3
208,483 + +0.6
208,491 - -0.1
208,491 - -0.7
208,537 - -1.3
208,677 + CSW01_14945 0.11 -2.1
208,791 - CSW01_14945 0.23 -1.2
208,791 - CSW01_14945 0.23 +0.2
208,791 - CSW01_14945 0.23 -1.8
208,821 + CSW01_14945 0.26 +1.9
208,954 - CSW01_14945 0.39 -1.0
208,959 + CSW01_14945 0.40 +0.5
208,964 + CSW01_14945 0.40 +0.1
208,967 - CSW01_14945 0.40 -1.9
208,978 + CSW01_14945 0.41 -0.9
208,987 + CSW01_14945 0.42 +0.5
208,987 + CSW01_14945 0.42 +1.7
208,987 + CSW01_14945 0.42 +0.7
208,987 + CSW01_14945 0.42 +3.4
208,987 + CSW01_14945 0.42 +1.0
208,987 + CSW01_14945 0.42 +0.6
208,995 - CSW01_14945 0.43 -1.2
208,995 - CSW01_14945 0.43 +0.2
208,995 - CSW01_14945 0.43 +0.2
208,995 - CSW01_14945 0.43 -1.9
208,995 - CSW01_14945 0.43 -1.6
208,995 - CSW01_14945 0.43 -2.2
208,995 - CSW01_14945 0.43 -2.2
208,995 - CSW01_14945 0.43 -1.8
208,995 - CSW01_14945 0.43 +2.2
209,006 - CSW01_14945 0.44 +0.7
209,035 + CSW01_14945 0.47 -3.3
209,043 - CSW01_14945 0.48 -1.4
209,048 + CSW01_14945 0.48 +0.8
209,142 - CSW01_14945 0.58 -2.1
209,150 + CSW01_14945 0.59 +0.8
209,323 + CSW01_14945 0.76 -0.7
209,336 - CSW01_14945 0.77 +2.2
209,336 - CSW01_14945 0.77 +1.5
209,341 - CSW01_14945 0.78 -0.7
209,361 + CSW01_14945 0.80 -1.1
209,361 + CSW01_14945 0.80 +0.0
209,369 - CSW01_14945 0.81 -4.3
209,369 - CSW01_14945 0.81 -2.6
209,379 + CSW01_14945 0.82 +0.9
209,417 - CSW01_14945 0.86 +0.3
209,493 - +0.4

Or see this region's nucleotide sequence