Experiment: ICP1_phage_235.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14720 and CSW01_14725 are separated by 65 nucleotides CSW01_14725 and CSW01_14730 are separated by 125 nucleotides CSW01_14730 and CSW01_14735 are separated by 173 nucleotides
CSW01_14720: CSW01_14720 - sigma-54-dependent Fis family transcriptional regulator, at 157,536 to 158,888
_14720
CSW01_14725: CSW01_14725 - hypothetical protein, at 158,954 to 159,064
_14725
CSW01_14730: CSW01_14730 - C4-dicarboxylate ABC transporter substrate-binding protein, at 159,190 to 160,197
_14730
CSW01_14735: CSW01_14735 - C4-dicarboxylate ABC transporter permease, at 160,371 to 162,512
_14735
Position (kb) 159
160
161 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 158.221 kb on + strand, within CSW01_14720 at 158.238 kb on - strand, within CSW01_14720 at 158.456 kb on + strand, within CSW01_14720 at 158.456 kb on + strand, within CSW01_14720 at 158.456 kb on + strand, within CSW01_14720 at 158.456 kb on + strand, within CSW01_14720 at 158.456 kb on + strand, within CSW01_14720 at 158.456 kb on + strand, within CSW01_14720 at 158.464 kb on - strand, within CSW01_14720 at 158.464 kb on - strand, within CSW01_14720 at 158.464 kb on - strand, within CSW01_14720 at 158.464 kb on - strand, within CSW01_14720 at 158.464 kb on - strand, within CSW01_14720 at 158.464 kb on - strand, within CSW01_14720 at 158.467 kb on - strand, within CSW01_14720 at 158.513 kb on - strand, within CSW01_14720 at 158.549 kb on + strand, within CSW01_14720 at 158.617 kb on - strand, within CSW01_14720 at 158.624 kb on + strand, within CSW01_14720 at 158.632 kb on - strand, within CSW01_14720 at 158.632 kb on - strand, within CSW01_14720 at 158.650 kb on + strand, within CSW01_14720 at 158.706 kb on + strand, within CSW01_14720 at 158.714 kb on - strand, within CSW01_14720 at 159.256 kb on + strand at 159.263 kb on - strand at 159.265 kb on + strand at 159.278 kb on + strand at 159.339 kb on - strand, within CSW01_14730 at 159.340 kb on + strand, within CSW01_14730 at 159.340 kb on + strand, within CSW01_14730 at 159.431 kb on - strand, within CSW01_14730 at 159.463 kb on + strand, within CSW01_14730 at 159.475 kb on + strand, within CSW01_14730 at 159.475 kb on + strand, within CSW01_14730 at 159.506 kb on - strand, within CSW01_14730 at 159.533 kb on + strand, within CSW01_14730 at 159.541 kb on - strand, within CSW01_14730 at 159.541 kb on - strand, within CSW01_14730 at 159.556 kb on + strand, within CSW01_14730 at 159.559 kb on - strand, within CSW01_14730 at 159.560 kb on + strand, within CSW01_14730 at 159.718 kb on - strand, within CSW01_14730 at 159.743 kb on + strand, within CSW01_14730 at 159.751 kb on - strand, within CSW01_14730 at 159.751 kb on - strand, within CSW01_14730 at 159.885 kb on - strand, within CSW01_14730 at 159.890 kb on - strand, within CSW01_14730 at 159.890 kb on - strand, within CSW01_14730 at 159.970 kb on + strand, within CSW01_14730 at 159.988 kb on - strand, within CSW01_14730 at 160.011 kb on + strand, within CSW01_14730 at 160.013 kb on + strand, within CSW01_14730 at 160.177 kb on + strand at 160.186 kb on + strand at 160.234 kb on + strand at 160.242 kb on - strand at 160.242 kb on - strand at 160.296 kb on - strand at 160.320 kb on - strand at 160.320 kb on - strand at 160.386 kb on - strand at 160.418 kb on - strand at 160.418 kb on - strand at 160.443 kb on - strand at 160.472 kb on - strand at 160.484 kb on + strand at 160.492 kb on - strand at 160.510 kb on + strand at 160.556 kb on + strand at 160.568 kb on + strand at 160.568 kb on + strand at 160.568 kb on + strand at 160.576 kb on - strand at 160.576 kb on - strand at 160.635 kb on + strand, within CSW01_14735 at 160.668 kb on - strand, within CSW01_14735 at 160.716 kb on + strand, within CSW01_14735 at 160.788 kb on - strand, within CSW01_14735 at 160.878 kb on + strand, within CSW01_14735 at 160.938 kb on + strand, within CSW01_14735 at 160.938 kb on + strand, within CSW01_14735 at 160.939 kb on + strand, within CSW01_14735 at 160.939 kb on + strand, within CSW01_14735 at 160.987 kb on + strand, within CSW01_14735 at 160.995 kb on - strand, within CSW01_14735 at 161.079 kb on + strand, within CSW01_14735 at 161.123 kb on + strand, within CSW01_14735 at 161.133 kb on - strand, within CSW01_14735 at 161.133 kb on - strand, within CSW01_14735 at 161.183 kb on - strand, within CSW01_14735 at 161.189 kb on + strand, within CSW01_14735
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1 remove 158,221 + CSW01_14720 0.51 -2.3 158,238 - CSW01_14720 0.52 -2.0 158,456 + CSW01_14720 0.68 +0.1 158,456 + CSW01_14720 0.68 -3.4 158,456 + CSW01_14720 0.68 +0.0 158,456 + CSW01_14720 0.68 -2.0 158,456 + CSW01_14720 0.68 +0.1 158,456 + CSW01_14720 0.68 +1.1 158,464 - CSW01_14720 0.69 -0.8 158,464 - CSW01_14720 0.69 -0.3 158,464 - CSW01_14720 0.69 +0.7 158,464 - CSW01_14720 0.69 -1.9 158,464 - CSW01_14720 0.69 -0.6 158,464 - CSW01_14720 0.69 +0.9 158,467 - CSW01_14720 0.69 -1.8 158,513 - CSW01_14720 0.72 -0.4 158,549 + CSW01_14720 0.75 +0.3 158,617 - CSW01_14720 0.80 +1.8 158,624 + CSW01_14720 0.80 -1.4 158,632 - CSW01_14720 0.81 -0.7 158,632 - CSW01_14720 0.81 -2.5 158,650 + CSW01_14720 0.82 +0.8 158,706 + CSW01_14720 0.86 +0.3 158,714 - CSW01_14720 0.87 -1.0 159,256 + +0.7 159,263 - -2.2 159,265 + +0.2 159,278 + +0.3 159,339 - CSW01_14730 0.15 -1.7 159,340 + CSW01_14730 0.15 -1.1 159,340 + CSW01_14730 0.15 +0.9 159,431 - CSW01_14730 0.24 -0.5 159,463 + CSW01_14730 0.27 +2.5 159,475 + CSW01_14730 0.28 +0.8 159,475 + CSW01_14730 0.28 +2.0 159,506 - CSW01_14730 0.31 -2.2 159,533 + CSW01_14730 0.34 -1.9 159,541 - CSW01_14730 0.35 +0.6 159,541 - CSW01_14730 0.35 +1.4 159,556 + CSW01_14730 0.36 +0.3 159,559 - CSW01_14730 0.37 -0.3 159,560 + CSW01_14730 0.37 -1.5 159,718 - CSW01_14730 0.52 -0.8 159,743 + CSW01_14730 0.55 -0.9 159,751 - CSW01_14730 0.56 +1.1 159,751 - CSW01_14730 0.56 -2.3 159,885 - CSW01_14730 0.69 +0.4 159,890 - CSW01_14730 0.69 +0.5 159,890 - CSW01_14730 0.69 +0.7 159,970 + CSW01_14730 0.77 -0.5 159,988 - CSW01_14730 0.79 -0.8 160,011 + CSW01_14730 0.81 -1.4 160,013 + CSW01_14730 0.82 -2.4 160,177 + +0.9 160,186 + -1.1 160,234 + +1.3 160,242 - +1.0 160,242 - +1.2 160,296 - -1.1 160,320 - -2.5 160,320 - -0.8 160,386 - +1.0 160,418 - +0.7 160,418 - -0.0 160,443 - -0.4 160,472 - +1.2 160,484 + -2.1 160,492 - -1.7 160,510 + +0.2 160,556 + -0.6 160,568 + +0.9 160,568 + +1.2 160,568 + -2.7 160,576 - -0.3 160,576 - +0.4 160,635 + CSW01_14735 0.12 -0.6 160,668 - CSW01_14735 0.14 -1.6 160,716 + CSW01_14735 0.16 -0.0 160,788 - CSW01_14735 0.19 +0.2 160,878 + CSW01_14735 0.24 -1.0 160,938 + CSW01_14735 0.26 -1.3 160,938 + CSW01_14735 0.26 -0.4 160,939 + CSW01_14735 0.27 -2.7 160,939 + CSW01_14735 0.27 -0.4 160,987 + CSW01_14735 0.29 -0.8 160,995 - CSW01_14735 0.29 +0.2 161,079 + CSW01_14735 0.33 -2.2 161,123 + CSW01_14735 0.35 +0.7 161,133 - CSW01_14735 0.36 -0.4 161,133 - CSW01_14735 0.36 -1.4 161,183 - CSW01_14735 0.38 -0.1 161,189 + CSW01_14735 0.38 -0.5
Or see this region's nucleotide sequence