Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14230

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14220 and CSW01_14225 are separated by 187 nucleotidesCSW01_14225 and CSW01_14230 are separated by 53 nucleotidesCSW01_14230 and CSW01_14235 are separated by 340 nucleotidesCSW01_14235 and CSW01_14240 are separated by 13 nucleotides CSW01_14220: CSW01_14220 - HDOD domain-containing protein, at 42,213 to 43,085 _14220 CSW01_14225: CSW01_14225 - phosphatidylglycerophosphatase B, at 43,273 to 44,025 _14225 CSW01_14230: CSW01_14230 - serine/threonine transporter SstT, at 44,079 to 45,296 _14230 CSW01_14235: CSW01_14235 - copper chaperone PCu(A)C, at 45,637 to 46,089 _14235 CSW01_14240: CSW01_14240 - SCO family protein, at 46,103 to 46,684 _14240 Position (kb) 44 45 46Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 43.239 kb on - strandat 43.263 kb on + strandat 43.263 kb on + strandat 43.271 kb on - strandat 43.271 kb on - strandat 43.322 kb on + strandat 43.515 kb on + strand, within CSW01_14225at 43.604 kb on + strand, within CSW01_14225at 43.612 kb on - strand, within CSW01_14225at 43.612 kb on - strand, within CSW01_14225at 43.635 kb on + strand, within CSW01_14225at 43.643 kb on - strand, within CSW01_14225at 43.681 kb on + strand, within CSW01_14225at 43.689 kb on - strand, within CSW01_14225at 43.689 kb on - strand, within CSW01_14225at 43.689 kb on - strand, within CSW01_14225at 43.689 kb on - strand, within CSW01_14225at 43.689 kb on - strand, within CSW01_14225at 43.894 kb on + strand, within CSW01_14225at 43.897 kb on - strand, within CSW01_14225at 43.965 kb on + strandat 43.973 kb on - strandat 43.973 kb on - strandat 44.101 kb on + strandat 44.107 kb on - strandat 44.114 kb on - strandat 44.142 kb on + strandat 44.142 kb on + strandat 44.142 kb on + strandat 44.142 kb on + strandat 44.142 kb on + strandat 44.150 kb on - strandat 44.150 kb on - strandat 44.150 kb on - strandat 44.150 kb on - strandat 44.163 kb on + strandat 44.189 kb on - strandat 44.276 kb on + strand, within CSW01_14230at 44.321 kb on + strand, within CSW01_14230at 44.358 kb on + strand, within CSW01_14230at 44.363 kb on - strand, within CSW01_14230at 44.373 kb on + strand, within CSW01_14230at 44.373 kb on + strand, within CSW01_14230at 44.381 kb on - strand, within CSW01_14230at 44.430 kb on + strand, within CSW01_14230at 44.430 kb on + strand, within CSW01_14230at 44.430 kb on + strand, within CSW01_14230at 44.434 kb on - strand, within CSW01_14230at 44.477 kb on + strand, within CSW01_14230at 44.477 kb on + strand, within CSW01_14230at 44.485 kb on - strand, within CSW01_14230at 44.485 kb on - strand, within CSW01_14230at 44.485 kb on - strand, within CSW01_14230at 44.817 kb on - strand, within CSW01_14230at 44.826 kb on + strand, within CSW01_14230at 44.826 kb on + strand, within CSW01_14230at 44.914 kb on + strand, within CSW01_14230at 44.914 kb on + strand, within CSW01_14230at 44.934 kb on + strand, within CSW01_14230at 44.972 kb on + strand, within CSW01_14230at 44.980 kb on - strand, within CSW01_14230at 45.012 kb on + strand, within CSW01_14230at 45.022 kb on + strand, within CSW01_14230at 45.022 kb on + strand, within CSW01_14230at 45.128 kb on - strand, within CSW01_14230at 45.298 kb on + strandat 45.344 kb on + strandat 45.350 kb on + strandat 45.506 kb on - strandat 45.506 kb on - strandat 45.579 kb on - strandat 45.595 kb on + strandat 45.595 kb on + strandat 45.595 kb on + strandat 45.595 kb on + strandat 45.595 kb on + strandat 45.595 kb on + strandat 45.603 kb on + strandat 45.603 kb on - strandat 45.603 kb on - strandat 45.639 kb on + strandat 45.642 kb on - strandat 45.647 kb on - strandat 45.649 kb on + strandat 45.657 kb on - strandat 45.788 kb on - strand, within CSW01_14235at 45.811 kb on + strand, within CSW01_14235at 45.883 kb on - strand, within CSW01_14235at 45.921 kb on - strand, within CSW01_14235at 45.933 kb on + strand, within CSW01_14235at 45.933 kb on + strand, within CSW01_14235at 46.033 kb on + strand, within CSW01_14235at 46.213 kb on + strand, within CSW01_14240at 46.221 kb on - strand, within CSW01_14240at 46.229 kb on - strand, within CSW01_14240

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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43,239 - -2.2
43,263 + +0.0
43,263 + -0.3
43,271 - +0.4
43,271 - -2.0
43,322 + -0.2
43,515 + CSW01_14225 0.32 -0.4
43,604 + CSW01_14225 0.44 +0.1
43,612 - CSW01_14225 0.45 -3.3
43,612 - CSW01_14225 0.45 +0.4
43,635 + CSW01_14225 0.48 -1.2
43,643 - CSW01_14225 0.49 +1.3
43,681 + CSW01_14225 0.54 -1.6
43,689 - CSW01_14225 0.55 -0.5
43,689 - CSW01_14225 0.55 +0.3
43,689 - CSW01_14225 0.55 -0.3
43,689 - CSW01_14225 0.55 -2.8
43,689 - CSW01_14225 0.55 +1.0
43,894 + CSW01_14225 0.82 -0.6
43,897 - CSW01_14225 0.83 -1.5
43,965 + -3.1
43,973 - +0.7
43,973 - -0.5
44,101 + -0.3
44,107 - -1.7
44,114 - -0.1
44,142 + -0.4
44,142 + -1.8
44,142 + -0.4
44,142 + -0.1
44,142 + -2.4
44,150 - +1.0
44,150 - -1.7
44,150 - -0.2
44,150 - -0.7
44,163 + +0.6
44,189 - -0.3
44,276 + CSW01_14230 0.16 -0.4
44,321 + CSW01_14230 0.20 +1.3
44,358 + CSW01_14230 0.23 +0.6
44,363 - CSW01_14230 0.23 +0.9
44,373 + CSW01_14230 0.24 -2.0
44,373 + CSW01_14230 0.24 +0.2
44,381 - CSW01_14230 0.25 +0.9
44,430 + CSW01_14230 0.29 -0.2
44,430 + CSW01_14230 0.29 +0.4
44,430 + CSW01_14230 0.29 +1.3
44,434 - CSW01_14230 0.29 +1.4
44,477 + CSW01_14230 0.33 -0.8
44,477 + CSW01_14230 0.33 -0.3
44,485 - CSW01_14230 0.33 +1.1
44,485 - CSW01_14230 0.33 -1.4
44,485 - CSW01_14230 0.33 +1.0
44,817 - CSW01_14230 0.61 -0.0
44,826 + CSW01_14230 0.61 +2.0
44,826 + CSW01_14230 0.61 -0.2
44,914 + CSW01_14230 0.69 +0.0
44,914 + CSW01_14230 0.69 -2.1
44,934 + CSW01_14230 0.70 +0.4
44,972 + CSW01_14230 0.73 +0.5
44,980 - CSW01_14230 0.74 +0.1
45,012 + CSW01_14230 0.77 -0.2
45,022 + CSW01_14230 0.77 -0.3
45,022 + CSW01_14230 0.77 -0.3
45,128 - CSW01_14230 0.86 +0.4
45,298 + +1.7
45,344 + -0.0
45,350 + -0.5
45,506 - -0.2
45,506 - -0.0
45,579 - -0.9
45,595 + +3.4
45,595 + +0.0
45,595 + -1.8
45,595 + -2.1
45,595 + -1.7
45,595 + -0.5
45,603 + +1.7
45,603 - -1.7
45,603 - -0.7
45,639 + +0.7
45,642 - +0.7
45,647 - +1.7
45,649 + -3.1
45,657 - +0.7
45,788 - CSW01_14235 0.33 +0.6
45,811 + CSW01_14235 0.38 -0.4
45,883 - CSW01_14235 0.54 +1.1
45,921 - CSW01_14235 0.63 -0.8
45,933 + CSW01_14235 0.65 -2.4
45,933 + CSW01_14235 0.65 +0.6
46,033 + CSW01_14235 0.87 -0.3
46,213 + CSW01_14240 0.19 -1.2
46,221 - CSW01_14240 0.20 +1.4
46,229 - CSW01_14240 0.22 +0.6

Or see this region's nucleotide sequence