Experiment: ICP1_phage_235.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14215 and CSW01_14220 are separated by 59 nucleotides CSW01_14220 and CSW01_14225 are separated by 187 nucleotides CSW01_14225 and CSW01_14230 are separated by 53 nucleotides
CSW01_14215: CSW01_14215 - DUF839 domain-containing protein, at 40,279 to 42,153
_14215
CSW01_14220: CSW01_14220 - HDOD domain-containing protein, at 42,213 to 43,085
_14220
CSW01_14225: CSW01_14225 - phosphatidylglycerophosphatase B, at 43,273 to 44,025
_14225
CSW01_14230: CSW01_14230 - serine/threonine transporter SstT, at 44,079 to 45,296
_14230
Position (kb) 42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 41.295 kb on + strand, within CSW01_14215 at 41.353 kb on - strand, within CSW01_14215 at 41.426 kb on + strand, within CSW01_14215 at 41.431 kb on + strand, within CSW01_14215 at 41.439 kb on - strand, within CSW01_14215 at 41.439 kb on - strand, within CSW01_14215 at 41.596 kb on - strand, within CSW01_14215 at 41.812 kb on + strand, within CSW01_14215 at 41.830 kb on - strand, within CSW01_14215 at 41.844 kb on - strand, within CSW01_14215 at 41.890 kb on - strand, within CSW01_14215 at 41.890 kb on - strand, within CSW01_14215 at 41.890 kb on - strand, within CSW01_14215 at 41.926 kb on - strand, within CSW01_14215 at 41.953 kb on + strand, within CSW01_14215 at 41.953 kb on + strand, within CSW01_14215 at 41.955 kb on - strand, within CSW01_14215 at 41.969 kb on - strand at 41.969 kb on - strand at 41.972 kb on + strand at 41.972 kb on + strand at 41.972 kb on + strand at 41.995 kb on + strand at 42.010 kb on - strand at 42.108 kb on - strand at 42.130 kb on - strand at 42.234 kb on + strand at 42.297 kb on + strand at 42.369 kb on + strand, within CSW01_14220 at 42.495 kb on + strand, within CSW01_14220 at 42.549 kb on - strand, within CSW01_14220 at 42.588 kb on + strand, within CSW01_14220 at 42.592 kb on - strand, within CSW01_14220 at 42.620 kb on - strand, within CSW01_14220 at 42.628 kb on + strand, within CSW01_14220 at 42.636 kb on - strand, within CSW01_14220 at 42.670 kb on + strand, within CSW01_14220 at 42.673 kb on - strand, within CSW01_14220 at 42.988 kb on + strand, within CSW01_14220 at 42.988 kb on + strand, within CSW01_14220 at 42.988 kb on + strand, within CSW01_14220 at 42.996 kb on - strand, within CSW01_14220 at 42.996 kb on - strand, within CSW01_14220 at 42.996 kb on - strand, within CSW01_14220 at 43.005 kb on - strand at 43.018 kb on - strand at 43.059 kb on - strand at 43.068 kb on + strand at 43.239 kb on - strand at 43.263 kb on + strand at 43.263 kb on + strand at 43.271 kb on - strand at 43.271 kb on - strand at 43.322 kb on + strand at 43.515 kb on + strand, within CSW01_14225 at 43.604 kb on + strand, within CSW01_14225 at 43.612 kb on - strand, within CSW01_14225 at 43.612 kb on - strand, within CSW01_14225 at 43.635 kb on + strand, within CSW01_14225 at 43.643 kb on - strand, within CSW01_14225 at 43.681 kb on + strand, within CSW01_14225 at 43.689 kb on - strand, within CSW01_14225 at 43.689 kb on - strand, within CSW01_14225 at 43.689 kb on - strand, within CSW01_14225 at 43.689 kb on - strand, within CSW01_14225 at 43.689 kb on - strand, within CSW01_14225 at 43.894 kb on + strand, within CSW01_14225 at 43.897 kb on - strand, within CSW01_14225 at 43.965 kb on + strand at 43.973 kb on - strand at 43.973 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1 remove 41,295 + CSW01_14215 0.54 -0.1 41,353 - CSW01_14215 0.57 -1.9 41,426 + CSW01_14215 0.61 +0.3 41,431 + CSW01_14215 0.61 -0.0 41,439 - CSW01_14215 0.62 +0.8 41,439 - CSW01_14215 0.62 +2.7 41,596 - CSW01_14215 0.70 +0.0 41,812 + CSW01_14215 0.82 -0.7 41,830 - CSW01_14215 0.83 -0.6 41,844 - CSW01_14215 0.83 +0.1 41,890 - CSW01_14215 0.86 +1.5 41,890 - CSW01_14215 0.86 -0.9 41,890 - CSW01_14215 0.86 -0.1 41,926 - CSW01_14215 0.88 +1.0 41,953 + CSW01_14215 0.89 +0.9 41,953 + CSW01_14215 0.89 -0.5 41,955 - CSW01_14215 0.89 +0.1 41,969 - +0.9 41,969 - +1.3 41,972 + +1.3 41,972 + +0.5 41,972 + +0.3 41,995 + -0.3 42,010 - -0.5 42,108 - -2.4 42,130 - +0.4 42,234 + -0.9 42,297 + -3.0 42,369 + CSW01_14220 0.18 -0.2 42,495 + CSW01_14220 0.32 +0.8 42,549 - CSW01_14220 0.38 +0.5 42,588 + CSW01_14220 0.43 -1.0 42,592 - CSW01_14220 0.43 +0.6 42,620 - CSW01_14220 0.47 +0.2 42,628 + CSW01_14220 0.48 +0.5 42,636 - CSW01_14220 0.48 +1.5 42,670 + CSW01_14220 0.52 +0.1 42,673 - CSW01_14220 0.53 -0.1 42,988 + CSW01_14220 0.89 +1.4 42,988 + CSW01_14220 0.89 +1.5 42,988 + CSW01_14220 0.89 -2.6 42,996 - CSW01_14220 0.90 -0.3 42,996 - CSW01_14220 0.90 +1.1 42,996 - CSW01_14220 0.90 -0.2 43,005 - -0.3 43,018 - -0.2 43,059 - -2.5 43,068 + +0.1 43,239 - -2.2 43,263 + +0.0 43,263 + -0.3 43,271 - +0.4 43,271 - -2.0 43,322 + -0.2 43,515 + CSW01_14225 0.32 -0.4 43,604 + CSW01_14225 0.44 +0.1 43,612 - CSW01_14225 0.45 -3.3 43,612 - CSW01_14225 0.45 +0.4 43,635 + CSW01_14225 0.48 -1.2 43,643 - CSW01_14225 0.49 +1.3 43,681 + CSW01_14225 0.54 -1.6 43,689 - CSW01_14225 0.55 -0.5 43,689 - CSW01_14225 0.55 +0.3 43,689 - CSW01_14225 0.55 -0.3 43,689 - CSW01_14225 0.55 -2.8 43,689 - CSW01_14225 0.55 +1.0 43,894 + CSW01_14225 0.82 -0.6 43,897 - CSW01_14225 0.83 -1.5 43,965 + -3.1 43,973 - +0.7 43,973 - -0.5
Or see this region's nucleotide sequence