Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14200

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14190 and CSW01_14195 are separated by 89 nucleotidesCSW01_14195 and CSW01_14200 are separated by 0 nucleotidesCSW01_14200 and CSW01_14205 are separated by 120 nucleotides CSW01_14190: CSW01_14190 - hypothetical protein, at 35,605 to 35,859 _14190 CSW01_14195: CSW01_14195 - IclR family transcriptional regulator, at 35,949 to 36,683 _14195 CSW01_14200: CSW01_14200 - arginase, at 36,684 to 37,526 _14200 CSW01_14205: CSW01_14205 - methyl-accepting chemotaxis protein, at 37,647 to 39,212 _14205 Position (kb) 36 37 38Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 35.704 kb on - strand, within CSW01_14190at 35.777 kb on + strand, within CSW01_14190at 35.785 kb on - strand, within CSW01_14190at 35.926 kb on + strandat 35.938 kb on + strandat 36.225 kb on + strand, within CSW01_14195at 36.225 kb on + strand, within CSW01_14195at 36.225 kb on + strand, within CSW01_14195at 36.233 kb on - strand, within CSW01_14195at 36.233 kb on - strand, within CSW01_14195at 36.233 kb on - strand, within CSW01_14195at 36.235 kb on - strand, within CSW01_14195at 36.365 kb on + strand, within CSW01_14195at 36.365 kb on + strand, within CSW01_14195at 36.373 kb on - strand, within CSW01_14195at 36.373 kb on - strand, within CSW01_14195at 36.406 kb on - strand, within CSW01_14195at 36.455 kb on - strand, within CSW01_14195at 36.493 kb on + strand, within CSW01_14195at 36.542 kb on + strand, within CSW01_14195at 36.570 kb on + strand, within CSW01_14195at 36.578 kb on - strand, within CSW01_14195at 36.620 kb on - strandat 36.670 kb on - strandat 36.679 kb on + strandat 36.679 kb on + strandat 36.701 kb on + strandat 36.714 kb on + strandat 36.800 kb on + strand, within CSW01_14200at 36.961 kb on - strand, within CSW01_14200at 37.014 kb on + strand, within CSW01_14200at 37.057 kb on + strand, within CSW01_14200at 37.065 kb on - strand, within CSW01_14200at 37.065 kb on - strand, within CSW01_14200at 37.065 kb on - strand, within CSW01_14200at 37.099 kb on + strand, within CSW01_14200at 37.136 kb on + strand, within CSW01_14200at 37.159 kb on - strand, within CSW01_14200at 37.161 kb on + strand, within CSW01_14200at 37.161 kb on + strand, within CSW01_14200at 37.161 kb on + strand, within CSW01_14200at 37.164 kb on - strand, within CSW01_14200at 37.169 kb on - strand, within CSW01_14200at 37.172 kb on + strand, within CSW01_14200at 37.180 kb on + strand, within CSW01_14200at 37.180 kb on + strand, within CSW01_14200at 37.180 kb on + strand, within CSW01_14200at 37.181 kb on - strand, within CSW01_14200at 37.187 kb on - strand, within CSW01_14200at 37.188 kb on - strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.278 kb on + strand, within CSW01_14200at 37.314 kb on - strand, within CSW01_14200at 37.314 kb on - strand, within CSW01_14200at 37.356 kb on + strand, within CSW01_14200at 37.356 kb on - strand, within CSW01_14200at 37.364 kb on - strand, within CSW01_14200at 37.376 kb on + strand, within CSW01_14200at 37.381 kb on - strand, within CSW01_14200at 37.421 kb on - strand, within CSW01_14200at 37.461 kb on + strandat 37.474 kb on - strandat 37.516 kb on + strandat 37.524 kb on - strandat 37.579 kb on - strandat 37.581 kb on - strandat 37.588 kb on + strandat 37.589 kb on - strandat 37.677 kb on + strandat 37.690 kb on + strandat 37.700 kb on + strandat 37.700 kb on + strandat 37.700 kb on + strandat 37.703 kb on - strandat 37.708 kb on - strandat 37.734 kb on + strandat 37.805 kb on + strand, within CSW01_14205at 37.815 kb on + strand, within CSW01_14205at 37.821 kb on - strand, within CSW01_14205at 37.929 kb on + strand, within CSW01_14205at 37.994 kb on - strand, within CSW01_14205at 38.036 kb on + strand, within CSW01_14205at 38.248 kb on + strand, within CSW01_14205at 38.256 kb on - strand, within CSW01_14205at 38.261 kb on - strand, within CSW01_14205at 38.288 kb on - strand, within CSW01_14205at 38.291 kb on + strand, within CSW01_14205at 38.309 kb on - strand, within CSW01_14205at 38.469 kb on + strand, within CSW01_14205at 38.480 kb on + strand, within CSW01_14205at 38.480 kb on + strand, within CSW01_14205at 38.480 kb on + strand, within CSW01_14205at 38.488 kb on - strand, within CSW01_14205at 38.488 kb on - strand, within CSW01_14205at 38.488 kb on - strand, within CSW01_14205at 38.521 kb on + strand, within CSW01_14205

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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35,704 - CSW01_14190 0.39 -1.3
35,777 + CSW01_14190 0.67 -0.2
35,785 - CSW01_14190 0.71 -0.2
35,926 + -1.8
35,938 + -0.3
36,225 + CSW01_14195 0.38 +0.8
36,225 + CSW01_14195 0.38 -1.6
36,225 + CSW01_14195 0.38 -1.9
36,233 - CSW01_14195 0.39 +0.6
36,233 - CSW01_14195 0.39 -0.2
36,233 - CSW01_14195 0.39 +0.7
36,235 - CSW01_14195 0.39 -1.1
36,365 + CSW01_14195 0.57 +1.0
36,365 + CSW01_14195 0.57 -0.3
36,373 - CSW01_14195 0.58 +2.4
36,373 - CSW01_14195 0.58 -2.2
36,406 - CSW01_14195 0.62 +1.3
36,455 - CSW01_14195 0.69 +0.4
36,493 + CSW01_14195 0.74 -1.2
36,542 + CSW01_14195 0.81 -0.5
36,570 + CSW01_14195 0.84 -1.8
36,578 - CSW01_14195 0.86 -0.9
36,620 - +0.6
36,670 - -1.2
36,679 + +2.8
36,679 + -1.4
36,701 + -4.3
36,714 + -2.9
36,800 + CSW01_14200 0.14 -2.5
36,961 - CSW01_14200 0.33 -1.0
37,014 + CSW01_14200 0.39 -0.1
37,057 + CSW01_14200 0.44 -2.3
37,065 - CSW01_14200 0.45 +1.1
37,065 - CSW01_14200 0.45 -0.6
37,065 - CSW01_14200 0.45 -0.3
37,099 + CSW01_14200 0.49 -0.7
37,136 + CSW01_14200 0.54 -0.9
37,159 - CSW01_14200 0.56 -0.8
37,161 + CSW01_14200 0.57 -1.0
37,161 + CSW01_14200 0.57 -2.4
37,161 + CSW01_14200 0.57 -2.7
37,164 - CSW01_14200 0.57 -0.3
37,169 - CSW01_14200 0.58 +0.2
37,172 + CSW01_14200 0.58 +1.1
37,180 + CSW01_14200 0.59 +0.0
37,180 + CSW01_14200 0.59 -1.0
37,180 + CSW01_14200 0.59 +1.2
37,181 - CSW01_14200 0.59 -0.3
37,187 - CSW01_14200 0.60 -0.7
37,188 - CSW01_14200 0.60 -1.2
37,219 + CSW01_14200 0.63 +0.6
37,219 + CSW01_14200 0.63 -1.3
37,219 + CSW01_14200 0.63 -0.2
37,219 + CSW01_14200 0.63 -1.5
37,219 + CSW01_14200 0.63 +0.2
37,219 + CSW01_14200 0.63 -0.3
37,219 + CSW01_14200 0.63 +0.1
37,219 + CSW01_14200 0.63 +0.6
37,219 + CSW01_14200 0.63 +0.9
37,227 - CSW01_14200 0.64 -0.8
37,227 - CSW01_14200 0.64 +0.5
37,227 - CSW01_14200 0.64 +0.2
37,227 - CSW01_14200 0.64 -1.7
37,227 - CSW01_14200 0.64 -0.6
37,227 - CSW01_14200 0.64 -1.4
37,227 - CSW01_14200 0.64 -1.4
37,227 - CSW01_14200 0.64 -3.0
37,227 - CSW01_14200 0.64 +0.0
37,227 - CSW01_14200 0.64 -2.3
37,227 - CSW01_14200 0.64 -1.2
37,227 - CSW01_14200 0.64 +1.4
37,227 - CSW01_14200 0.64 -0.3
37,278 + CSW01_14200 0.70 +0.2
37,314 - CSW01_14200 0.75 -2.0
37,314 - CSW01_14200 0.75 -3.7
37,356 + CSW01_14200 0.80 +0.2
37,356 - CSW01_14200 0.80 -2.0
37,364 - CSW01_14200 0.81 -1.5
37,376 + CSW01_14200 0.82 -0.0
37,381 - CSW01_14200 0.83 +1.6
37,421 - CSW01_14200 0.87 +0.4
37,461 + -1.4
37,474 - -0.6
37,516 + -0.6
37,524 - +1.1
37,579 - -0.5
37,581 - +2.5
37,588 + +0.2
37,589 - -0.8
37,677 + +1.6
37,690 + -2.7
37,700 + -1.3
37,700 + +0.8
37,700 + +1.4
37,703 - +0.1
37,708 - +2.2
37,734 + +0.2
37,805 + CSW01_14205 0.10 +0.6
37,815 + CSW01_14205 0.11 +0.2
37,821 - CSW01_14205 0.11 -0.6
37,929 + CSW01_14205 0.18 +0.2
37,994 - CSW01_14205 0.22 -0.7
38,036 + CSW01_14205 0.25 -3.1
38,248 + CSW01_14205 0.38 +0.9
38,256 - CSW01_14205 0.39 +1.3
38,261 - CSW01_14205 0.39 -2.5
38,288 - CSW01_14205 0.41 +0.8
38,291 + CSW01_14205 0.41 +0.4
38,309 - CSW01_14205 0.42 -0.2
38,469 + CSW01_14205 0.52 -3.3
38,480 + CSW01_14205 0.53 -0.8
38,480 + CSW01_14205 0.53 -2.5
38,480 + CSW01_14205 0.53 -0.6
38,488 - CSW01_14205 0.54 +1.4
38,488 - CSW01_14205 0.54 +0.2
38,488 - CSW01_14205 0.54 -2.4
38,521 + CSW01_14205 0.56 +1.2

Or see this region's nucleotide sequence