Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13375

Experiment: ICP1_phage_235.3_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_235.3_MOI_rep1
2,845,661	+		CSW01_13370	0.26	+0.8
2,845,708	-		CSW01_13370	0.30	-1.1
2,845,716	+		CSW01_13370	0.31	-1.2
2,845,762	+		CSW01_13370	0.34	-0.8
2,845,794	+		CSW01_13370	0.37	-1.1
2,845,814	+		CSW01_13370	0.39	+0.8
2,845,814	+		CSW01_13370	0.39	-0.4
2,845,819	+		CSW01_13370	0.39	-1.5
2,845,822	-		CSW01_13370	0.39	-0.7
2,845,836	+		CSW01_13370	0.40	+0.5
2,845,838	+		CSW01_13370	0.41	+0.7
2,846,026	-		CSW01_13370	0.56	-1.1
2,846,034	-		CSW01_13370	0.57	+0.9
2,846,072	-		CSW01_13370	0.60	-3.7
2,846,085	+		CSW01_13370	0.61	+1.0
2,846,085	+		CSW01_13370	0.61	+1.0
2,846,085	+		CSW01_13370	0.61	-0.5
2,846,093	-		CSW01_13370	0.62	-0.6
2,846,111	+		CSW01_13370	0.63	-1.6
2,846,133	+		CSW01_13370	0.65	+0.8
2,846,176	+		CSW01_13370	0.68	+0.8
2,846,176	+		CSW01_13370	0.68	+1.9
2,846,176	+		CSW01_13370	0.68	+0.3
2,846,176	+		CSW01_13370	0.68	-2.4
2,846,197	+		CSW01_13370	0.70	-3.6
2,846,200	-		CSW01_13370	0.70	+1.1
2,846,200	-		CSW01_13370	0.70	-0.4
2,846,200	-		CSW01_13370	0.70	+0.4
2,846,294	+		CSW01_13370	0.78	-2.5
2,846,295	-		CSW01_13370	0.78	-1.3
2,846,295	-		CSW01_13370	0.78	+0.0
2,846,320	-		CSW01_13370	0.80	+1.0
2,846,324	+		CSW01_13370	0.81	-3.3
2,846,332	-		CSW01_13370	0.81	-1.8
2,846,411	+		CSW01_13370	0.88	+0.7
2,846,419	-		CSW01_13370	0.88	+0.8
2,846,428	+		CSW01_13370	0.89	-2.0
2,846,429	-		CSW01_13370	0.89	-1.4
2,846,496	+				-2.2
2,846,504	-				-0.8
2,846,504	-				+1.8
2,846,513	-				+0.6
2,846,581	+				+0.5
2,846,586	+				-2.5
2,846,602	+				+0.4
2,846,615	-				+1.2
2,846,688	+				-0.2
2,846,688	+				+0.7
2,846,696	-				-2.9
2,846,701	-				+1.2
2,846,797	+		CSW01_13375	0.21	-0.1
2,846,820	+		CSW01_13375	0.23	-1.3
2,846,828	-		CSW01_13375	0.24	-2.5
2,846,859	-		CSW01_13375	0.28	-2.0
2,846,864	-		CSW01_13375	0.29	-1.9
2,846,870	+		CSW01_13375	0.30	+1.4
2,846,930	+		CSW01_13375	0.37	+0.3
2,846,938	-		CSW01_13375	0.38	-1.4
2,846,938	-		CSW01_13375	0.38	+0.6
2,846,938	-		CSW01_13375	0.38	-1.9
2,846,938	-		CSW01_13375	0.38	-2.5
2,846,938	-		CSW01_13375	0.38	+1.2
2,846,950	+		CSW01_13375	0.40	+0.1
2,847,038	+		CSW01_13375	0.51	+1.0
2,847,046	-		CSW01_13375	0.52	-2.1
2,847,057	+		CSW01_13375	0.53	+0.2
2,847,057	+		CSW01_13375	0.53	+0.1
2,847,065	-		CSW01_13375	0.54	+0.2
2,847,227	+		CSW01_13375	0.75	-4.5
2,847,281	-		CSW01_13375	0.82	-2.3
2,847,304	+		CSW01_13375	0.85	-2.4
2,847,315	+		CSW01_13375	0.86	-1.3
2,847,370	-				-0.9
2,847,396	+				-1.3
2,847,404	-				+1.8
2,847,404	-				+0.5
2,847,430	+				+1.1
2,847,430	+				-0.6
2,847,439	-				-3.2
2,847,538	+		CSW01_13380	0.10	+0.8
2,847,546	-		CSW01_13380	0.11	-2.7
2,847,547	+		CSW01_13380	0.11	-1.9
2,847,547	+		CSW01_13380	0.11	-3.9
2,847,547	+		CSW01_13380	0.11	+0.1
2,847,555	-		CSW01_13380	0.12	-2.5
2,847,555	-		CSW01_13380	0.12	-3.1
2,847,555	-		CSW01_13380	0.12	+0.9
2,847,555	-		CSW01_13380	0.12	+0.0
2,847,563	-		CSW01_13380	0.13	+0.3
2,847,565	-		CSW01_13380	0.13	+0.9
2,847,668	+		CSW01_13380	0.23	+0.3
2,847,702	+		CSW01_13380	0.27	+0.0
2,847,741	+		CSW01_13380	0.31	+0.9
2,847,747	+		CSW01_13380	0.31	-0.3
2,847,747	+		CSW01_13380	0.31	-2.0
2,847,766	+		CSW01_13380	0.33	-0.2
2,847,766	+		CSW01_13380	0.33	-3.0
2,847,766	+		CSW01_13380	0.33	-1.5
2,847,766	+		CSW01_13380	0.33	+0.1
2,847,766	+		CSW01_13380	0.33	+2.4
2,847,774	-		CSW01_13380	0.34	-0.8
2,847,774	-		CSW01_13380	0.34	+2.3
2,847,774	-		CSW01_13380	0.34	+1.4
2,847,774	-		CSW01_13380	0.34	-1.0
2,847,774	-		CSW01_13380	0.34	-0.1
2,847,774	-		CSW01_13380	0.34	-1.8
2,847,774	-		CSW01_13380	0.34	+1.5
2,847,774	-		CSW01_13380	0.34	+0.6
2,847,774	-		CSW01_13380	0.34	+0.8
2,847,774	-		CSW01_13380	0.34	+0.4
2,847,774	-		CSW01_13380	0.34	+1.0
2,847,801	+		CSW01_13380	0.37	+1.3
2,847,810	-		CSW01_13380	0.38	-1.5
2,847,812	+		CSW01_13380	0.38	-0.4
2,847,812	+		CSW01_13380	0.38	+1.3
2,847,812	+		CSW01_13380	0.38	-0.2
2,847,812	+		CSW01_13380	0.38	-1.9
2,847,812	+		CSW01_13380	0.38	+0.6
2,847,820	-		CSW01_13380	0.39	+0.5
2,847,820	-		CSW01_13380	0.39	+1.1
2,847,820	-		CSW01_13380	0.39	+0.2
2,847,820	-		CSW01_13380	0.39	-0.6
2,847,857	+		CSW01_13380	0.42	-0.8
2,847,874	+		CSW01_13380	0.44	+0.2
2,847,886	-		CSW01_13380	0.45	+0.8
2,847,904	+		CSW01_13380	0.47	-0.1
2,847,904	+		CSW01_13380	0.47	-0.8
2,847,912	-		CSW01_13380	0.48	-0.2
2,847,912	-		CSW01_13380	0.48	+0.6
2,847,912	-		CSW01_13380	0.48	-3.8
2,847,931	+		CSW01_13380	0.50	-0.8
2,847,933	-		CSW01_13380	0.50	-1.3
2,848,021	+		CSW01_13380	0.59	-0.2
2,848,041	-		CSW01_13380	0.61	+1.5
2,848,071	+		CSW01_13380	0.64	-2.0
2,848,098	+		CSW01_13380	0.66	-0.5
2,848,179	-		CSW01_13380	0.74	+0.4
2,848,181	-		CSW01_13380	0.75	+1.6
2,848,212	+		CSW01_13380	0.78	-0.1
2,848,220	-		CSW01_13380	0.79	-1.9
2,848,234	+		CSW01_13380	0.80	+2.2
2,848,244	+		CSW01_13380	0.81	-4.4
2,848,249	+		CSW01_13380	0.81	-3.0
2,848,249	+		CSW01_13380	0.81	+0.4
2,848,322	-		CSW01_13380	0.89	-0.5
2,848,322	-		CSW01_13380	0.89	-0.5
2,848,335	+				+0.1
2,848,336	+				-0.4
2,848,336	+				-1.3
2,848,336	+				-0.5
2,848,336	+				+1.1
2,848,344	-				+0.2
2,848,376	+				-0.6
2,848,386	+				+0.5
2,848,394	-				+0.8
2,848,394	-				+0.3
2,848,405	-				-0.6