Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13155

Experiment: ICP1_phage_235.3_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_235.3_MOI_rep1
2,796,442	-				-1.4
2,796,562	-				-0.0
2,796,616	-				+1.0
2,796,683	+				+1.4
2,796,727	-				-2.4
2,796,743	-				-2.3
2,796,743	-				-1.0
2,796,868	+		CSW01_13150	0.26	+0.5
2,796,897	+		CSW01_13150	0.30	+1.4
2,796,990	+		CSW01_13150	0.43	-0.1
2,797,080	-		CSW01_13150	0.55	-3.4
2,797,082	+		CSW01_13150	0.55	-0.6
2,797,085	-		CSW01_13150	0.55	-0.7
2,797,090	-		CSW01_13150	0.56	-3.7
2,797,091	-		CSW01_13150	0.56	-0.3
2,797,091	-		CSW01_13150	0.56	+1.2
2,797,106	+		CSW01_13150	0.58	+0.1
2,797,133	+		CSW01_13150	0.62	-0.9
2,797,187	+		CSW01_13150	0.69	-0.8
2,797,187	+		CSW01_13150	0.69	-1.7
2,797,195	-		CSW01_13150	0.70	+0.3
2,797,195	-		CSW01_13150	0.70	+0.8
2,797,195	-		CSW01_13150	0.70	-2.1
2,797,195	-		CSW01_13150	0.70	-1.0
2,797,196	-		CSW01_13150	0.70	+0.1
2,797,210	-		CSW01_13150	0.72	-2.3
2,797,325	+		CSW01_13150	0.88	-0.7
2,797,333	-		CSW01_13150	0.89	-0.2
2,797,333	-		CSW01_13150	0.89	-0.0
2,797,366	+				-1.5
2,797,374	-				-0.5
2,797,394	+				-0.9
2,797,395	-				+2.6
2,797,402	-				-0.4
2,797,417	-				-0.9
2,797,444	-				+1.4
2,797,454	+				-0.8
2,797,463	+				-0.8
2,797,463	+				-0.5
2,797,463	+				-0.1
2,797,463	+				-0.3
2,797,471	-				+0.1
2,797,471	-				+0.6
2,797,471	-				+1.3
2,797,531	-				+0.1
2,797,586	+				+0.9
2,797,664	-				-0.7
2,797,675	+		CSW01_13155	0.10	-3.3
2,797,686	+		CSW01_13155	0.11	-3.1
2,797,717	+		CSW01_13155	0.12	-0.7
2,797,725	-		CSW01_13155	0.12	-3.6
2,797,725	-		CSW01_13155	0.12	-1.9
2,797,799	-		CSW01_13155	0.15	-3.7
2,797,827	+		CSW01_13155	0.16	-0.5
2,797,839	+		CSW01_13155	0.17	+0.2
2,797,839	+		CSW01_13155	0.17	-2.9
2,797,847	-		CSW01_13155	0.17	-1.3
2,797,855	-		CSW01_13155	0.17	-0.5
2,797,857	-		CSW01_13155	0.18	+0.8
2,797,860	+		CSW01_13155	0.18	-1.4
2,797,870	+		CSW01_13155	0.18	-2.9
2,797,873	-		CSW01_13155	0.18	-2.2
2,797,970	+		CSW01_13155	0.22	-1.8
2,797,970	+		CSW01_13155	0.22	-0.2
2,797,977	-		CSW01_13155	0.22	-1.6
2,797,978	-		CSW01_13155	0.22	+0.3
2,798,026	-		CSW01_13155	0.24	-3.1
2,798,028	+		CSW01_13155	0.24	-0.2
2,798,028	+		CSW01_13155	0.24	-2.0
2,798,029	-		CSW01_13155	0.25	+1.2
2,798,035	+		CSW01_13155	0.25	+2.3
2,798,036	-		CSW01_13155	0.25	+0.8
2,798,036	-		CSW01_13155	0.25	-0.4
2,798,036	-		CSW01_13155	0.25	-1.2
2,798,036	-		CSW01_13155	0.25	+0.1
2,798,036	-		CSW01_13155	0.25	-1.5
2,798,036	-		CSW01_13155	0.25	-2.5
2,798,059	-		CSW01_13155	0.26	+0.6
2,798,162	-		CSW01_13155	0.30	-1.9
2,798,228	-		CSW01_13155	0.33	+1.6
2,798,230	-		CSW01_13155	0.33	-0.0
2,798,329	+		CSW01_13155	0.37	-1.3
2,798,337	-		CSW01_13155	0.37	-1.2
2,798,338	-		CSW01_13155	0.37	+0.2
2,798,338	-		CSW01_13155	0.37	-2.9
2,798,352	+		CSW01_13155	0.38	-2.0
2,798,393	+		CSW01_13155	0.39	+0.7
2,798,416	-		CSW01_13155	0.40	-2.2
2,798,420	+		CSW01_13155	0.40	-0.6
2,798,420	+		CSW01_13155	0.40	-3.6
2,798,420	+		CSW01_13155	0.40	-2.7
2,798,420	+		CSW01_13155	0.40	-2.3
2,798,464	+		CSW01_13155	0.42	-0.3
2,798,477	+		CSW01_13155	0.43	-1.1
2,798,486	-		CSW01_13155	0.43	-1.5
2,798,667	+		CSW01_13155	0.50	-4.4
2,798,702	-		CSW01_13155	0.52	-2.6
2,798,731	-		CSW01_13155	0.53	+0.2
2,798,731	-		CSW01_13155	0.53	-3.2
2,798,769	+		CSW01_13155	0.55	-0.9
2,798,769	+		CSW01_13155	0.55	-0.1
2,798,777	-		CSW01_13155	0.55	-0.4
2,798,777	-		CSW01_13155	0.55	+0.3
2,798,777	-		CSW01_13155	0.55	-1.7
2,798,827	+		CSW01_13155	0.57	-0.8
2,798,873	+		CSW01_13155	0.59	-0.6
2,798,948	-		CSW01_13155	0.62	-1.9
2,798,961	-		CSW01_13155	0.62	+1.7
2,799,015	+		CSW01_13155	0.65	-1.1
2,799,090	-		CSW01_13155	0.68	+0.5
2,799,130	-		CSW01_13155	0.69	-1.2
2,799,148	-		CSW01_13155	0.70	+0.4
2,799,215	-		CSW01_13155	0.73	+1.8
2,799,375	+		CSW01_13155	0.79	-3.8
2,799,375	+		CSW01_13155	0.79	+0.6
2,799,381	-		CSW01_13155	0.79	-1.9
2,799,394	-		CSW01_13155	0.80	-0.2
2,799,430	+		CSW01_13155	0.81	+1.0
2,799,430	+		CSW01_13155	0.81	-0.3
2,799,438	-		CSW01_13155	0.82	-0.6
2,799,480	+		CSW01_13155	0.83	-1.1
2,799,515	-		CSW01_13155	0.85	-2.7
2,799,566	+		CSW01_13155	0.87	-1.8
2,799,568	-		CSW01_13155	0.87	-0.3
2,799,654	-				-0.6
2,799,710	+				-2.8
2,799,718	-				-2.6
2,799,724	-				-2.3
2,799,735	-				+0.2
2,799,749	-				-0.3
2,799,893	-				+1.8
2,799,898	-				-0.6
2,799,927	+				-0.7
2,799,927	-				-0.6
2,799,928	-				-3.0
2,799,959	-				+0.4
2,799,959	-				-0.8
2,799,968	+				-1.4
2,800,038	+				+0.1
2,800,132	+				+1.0
2,800,163	-				-0.3
2,800,176	+				-3.0
2,800,187	+				+1.7
2,800,240	-		CSW01_13160	0.11	-4.0
2,800,263	+		CSW01_13160	0.12	-0.6
2,800,263	+		CSW01_13160	0.12	-0.6
2,800,263	+		CSW01_13160	0.12	-0.6
2,800,263	+		CSW01_13160	0.12	-2.0
2,800,271	-		CSW01_13160	0.13	-1.5
2,800,286	-		CSW01_13160	0.14	-0.1
2,800,286	-		CSW01_13160	0.14	+0.2
2,800,307	+		CSW01_13160	0.15	-0.3
2,800,307	+		CSW01_13160	0.15	-2.2
2,800,307	+		CSW01_13160	0.15	+1.5
2,800,315	-		CSW01_13160	0.15	+0.4
2,800,355	+		CSW01_13160	0.17	-2.4
2,800,355	+		CSW01_13160	0.17	+0.1
2,800,363	-		CSW01_13160	0.18	-0.7
2,800,363	-		CSW01_13160	0.18	+1.0
2,800,363	-		CSW01_13160	0.18	-1.6
2,800,382	-		CSW01_13160	0.19	-0.3
2,800,421	-		CSW01_13160	0.21	-0.2
2,800,437	-		CSW01_13160	0.22	+0.8
2,800,448	+		CSW01_13160	0.22	+1.7
2,800,455	-		CSW01_13160	0.23	+0.7
2,800,455	-		CSW01_13160	0.23	+0.5
2,800,469	+		CSW01_13160	0.23	+1.8
2,800,490	+		CSW01_13160	0.24	+2.7
2,800,498	-		CSW01_13160	0.25	-0.7
2,800,670	-		CSW01_13160	0.34	+0.3
2,800,706	-		CSW01_13160	0.36	-2.2
2,800,706	-		CSW01_13160	0.36	-2.1
2,800,765	+		CSW01_13160	0.39	+0.0
2,800,765	+		CSW01_13160	0.39	+0.8
2,800,773	-		CSW01_13160	0.40	-2.5
2,800,773	-		CSW01_13160	0.40	-2.3
2,800,797	-		CSW01_13160	0.41	-0.2
2,800,812	-		CSW01_13160	0.42	-0.4