Experiment: ICP1_phage_235.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_13005 and CSW01_13010 are separated by 143 nucleotides CSW01_13010 and CSW01_13015 are separated by 26 nucleotides CSW01_13015 and CSW01_13020 are separated by 24 nucleotides CSW01_13020 and CSW01_13025 are separated by 27 nucleotides
CSW01_13005: CSW01_13005 - hypothetical protein, at 2,781,907 to 2,782,389
_13005
CSW01_13010: CSW01_13010 - 50S ribosomal protein L17, at 2,782,533 to 2,782,919
_13010
CSW01_13015: CSW01_13015 - DNA-directed RNA polymerase subunit alpha, at 2,782,946 to 2,783,938
_13015
CSW01_13020: CSW01_13020 - 30S ribosomal protein S4, at 2,783,963 to 2,784,583
_13020
CSW01_13025: CSW01_13025 - 30S ribosomal protein S11, at 2,784,611 to 2,785,000
_13025
Position (kb) 2782
2783
2784 Strain fitness (log2 ratio) -1
0
1
2 at 2781.959 kb on + strand, within CSW01_13005 at 2781.959 kb on - strand, within CSW01_13005 at 2781.995 kb on + strand, within CSW01_13005 at 2782.021 kb on + strand, within CSW01_13005 at 2782.056 kb on - strand, within CSW01_13005 at 2782.154 kb on - strand, within CSW01_13005 at 2782.348 kb on + strand at 2782.384 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1 remove 2,781,959 + CSW01_13005 0.11 +2.1 2,781,959 - CSW01_13005 0.11 +0.6 2,781,995 + CSW01_13005 0.18 -0.4 2,782,021 + CSW01_13005 0.24 -1.1 2,782,056 - CSW01_13005 0.31 -0.2 2,782,154 - CSW01_13005 0.51 +0.8 2,782,348 + -0.3 2,782,384 + -0.3
Or see this region's nucleotide sequence