Experiment: ICP1_phage_235.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_12795 and CSW01_12800 overlap by 4 nucleotides CSW01_12800 and CSW01_12805 overlap by 65 nucleotides CSW01_12805 and CSW01_12810 are separated by 2 nucleotides CSW01_12810 and CSW01_12815 are separated by 55 nucleotides
CSW01_12795: CSW01_12795 - 3-deoxy-manno-octulosonate-8-phosphatase KdsC, at 2,740,954 to 2,741,511
_12795
CSW01_12800: CSW01_12800 - LPS export ABC transporter periplasmic protein LptC, at 2,741,508 to 2,742,071
_12800
CSW01_12805: CSW01_12805 - lipopolysaccharide transport periplasmic protein LptA, at 2,742,007 to 2,742,546
_12805
CSW01_12810: CSW01_12810 - ABC transporter ATP-binding protein, at 2,742,549 to 2,743,274
_12810
CSW01_12815: CSW01_12815 - RNA polymerase sigma-54 factor, at 2,743,330 to 2,744,793
_12815
Position (kb) 2742
2743 Strain fitness (log2 ratio) -2
-1
0
1 at 2741.009 kb on + strand at 2741.497 kb on + strand at 2741.497 kb on + strand at 2742.541 kb on + strand at 2742.546 kb on + strand at 2743.283 kb on + strand at 2743.283 kb on + strand at 2743.328 kb on + strand at 2743.347 kb on + strand at 2743.511 kb on + strand, within CSW01_12815
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1 remove 2,741,009 + -2.4 2,741,497 + -0.7 2,741,497 + -0.4 2,742,541 + +0.4 2,742,546 + -0.2 2,743,283 + -0.9 2,743,283 + +0.3 2,743,328 + +0.1 2,743,347 + -1.1 2,743,511 + CSW01_12815 0.12 +0.6
Or see this region's nucleotide sequence