Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12780

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_12770 and CSW01_12775 are separated by 4 nucleotidesCSW01_12775 and CSW01_12780 are separated by 127 nucleotidesCSW01_12780 and CSW01_12785 are separated by 237 nucleotides CSW01_12770: CSW01_12770 - ABC transporter permease, at 2,736,785 to 2,737,561 _12770 CSW01_12775: CSW01_12775 - phospholipid ABC transporter ATP-binding protein MlaF, at 2,737,566 to 2,738,369 _12775 CSW01_12780: CSW01_12780 - hypothetical protein, at 2,738,497 to 2,738,688 _12780 CSW01_12785: CSW01_12785 - calcium/sodium antiporter, at 2,738,926 to 2,739,924 _12785 Position (kb) 2738 2739Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2737.497 kb on - strandat 2737.530 kb on - strandat 2737.537 kb on + strandat 2737.537 kb on + strandat 2737.545 kb on - strandat 2737.545 kb on - strandat 2737.573 kb on + strandat 2737.573 kb on + strandat 2737.576 kb on - strandat 2737.581 kb on - strandat 2737.592 kb on - strandat 2737.619 kb on + strandat 2737.627 kb on - strandat 2737.664 kb on + strand, within CSW01_12775at 2737.664 kb on + strand, within CSW01_12775at 2737.664 kb on + strand, within CSW01_12775at 2737.664 kb on + strand, within CSW01_12775at 2737.672 kb on - strand, within CSW01_12775at 2737.672 kb on - strand, within CSW01_12775at 2737.695 kb on + strand, within CSW01_12775at 2737.717 kb on - strand, within CSW01_12775at 2737.740 kb on - strand, within CSW01_12775at 2737.744 kb on + strand, within CSW01_12775at 2737.754 kb on - strand, within CSW01_12775at 2737.801 kb on + strand, within CSW01_12775at 2737.809 kb on - strand, within CSW01_12775at 2737.883 kb on + strand, within CSW01_12775at 2737.903 kb on + strand, within CSW01_12775at 2737.903 kb on + strand, within CSW01_12775at 2737.911 kb on - strand, within CSW01_12775at 2737.966 kb on + strand, within CSW01_12775at 2737.966 kb on + strand, within CSW01_12775at 2737.966 kb on + strand, within CSW01_12775at 2737.976 kb on + strand, within CSW01_12775at 2737.985 kb on + strand, within CSW01_12775at 2737.990 kb on + strand, within CSW01_12775at 2738.050 kb on + strand, within CSW01_12775at 2738.058 kb on - strand, within CSW01_12775at 2738.058 kb on - strand, within CSW01_12775at 2738.058 kb on - strand, within CSW01_12775at 2738.058 kb on - strand, within CSW01_12775at 2738.058 kb on - strand, within CSW01_12775at 2738.080 kb on - strand, within CSW01_12775at 2738.088 kb on + strand, within CSW01_12775at 2738.096 kb on - strand, within CSW01_12775at 2738.098 kb on + strand, within CSW01_12775at 2738.098 kb on + strand, within CSW01_12775at 2738.098 kb on + strand, within CSW01_12775at 2738.106 kb on - strand, within CSW01_12775at 2738.128 kb on + strand, within CSW01_12775at 2738.147 kb on + strand, within CSW01_12775at 2738.155 kb on - strand, within CSW01_12775at 2738.189 kb on - strand, within CSW01_12775at 2738.202 kb on + strand, within CSW01_12775at 2738.243 kb on + strand, within CSW01_12775at 2738.286 kb on + strand, within CSW01_12775at 2738.359 kb on + strandat 2738.359 kb on + strandat 2738.375 kb on - strandat 2738.385 kb on - strandat 2738.447 kb on + strandat 2738.455 kb on - strandat 2738.541 kb on + strand, within CSW01_12780at 2738.574 kb on + strand, within CSW01_12780at 2738.596 kb on - strand, within CSW01_12780at 2738.712 kb on + strandat 2738.713 kb on + strandat 2738.720 kb on - strandat 2738.753 kb on + strandat 2738.784 kb on - strandat 2738.811 kb on - strandat 2738.867 kb on - strandat 2738.877 kb on + strandat 2738.880 kb on + strandat 2738.899 kb on + strandat 2738.899 kb on + strandat 2738.906 kb on + strandat 2738.914 kb on - strandat 2738.914 kb on - strandat 2739.041 kb on - strand, within CSW01_12785at 2739.041 kb on - strand, within CSW01_12785at 2739.046 kb on + strand, within CSW01_12785at 2739.113 kb on - strand, within CSW01_12785at 2739.164 kb on + strand, within CSW01_12785at 2739.169 kb on + strand, within CSW01_12785at 2739.169 kb on + strand, within CSW01_12785at 2739.174 kb on + strand, within CSW01_12785at 2739.182 kb on - strand, within CSW01_12785at 2739.188 kb on + strand, within CSW01_12785at 2739.196 kb on - strand, within CSW01_12785at 2739.196 kb on - strand, within CSW01_12785at 2739.257 kb on + strand, within CSW01_12785at 2739.471 kb on + strand, within CSW01_12785at 2739.485 kb on - strand, within CSW01_12785at 2739.567 kb on + strand, within CSW01_12785at 2739.567 kb on + strand, within CSW01_12785at 2739.596 kb on + strand, within CSW01_12785at 2739.597 kb on - strand, within CSW01_12785at 2739.626 kb on + strand, within CSW01_12785

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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2,737,497 - +1.1
2,737,530 - -0.8
2,737,537 + -2.7
2,737,537 + -0.3
2,737,545 - -0.6
2,737,545 - +2.2
2,737,573 + -2.1
2,737,573 + -0.4
2,737,576 - -2.7
2,737,581 - +0.6
2,737,592 - -0.2
2,737,619 + -0.4
2,737,627 - -1.9
2,737,664 + CSW01_12775 0.12 +0.3
2,737,664 + CSW01_12775 0.12 -0.2
2,737,664 + CSW01_12775 0.12 +0.5
2,737,664 + CSW01_12775 0.12 +0.6
2,737,672 - CSW01_12775 0.13 +0.0
2,737,672 - CSW01_12775 0.13 -3.3
2,737,695 + CSW01_12775 0.16 +1.2
2,737,717 - CSW01_12775 0.19 -1.7
2,737,740 - CSW01_12775 0.22 +0.9
2,737,744 + CSW01_12775 0.22 -0.5
2,737,754 - CSW01_12775 0.23 -0.7
2,737,801 + CSW01_12775 0.29 -0.4
2,737,809 - CSW01_12775 0.30 +1.1
2,737,883 + CSW01_12775 0.39 -1.7
2,737,903 + CSW01_12775 0.42 +0.1
2,737,903 + CSW01_12775 0.42 +0.2
2,737,911 - CSW01_12775 0.43 -0.1
2,737,966 + CSW01_12775 0.50 -2.0
2,737,966 + CSW01_12775 0.50 -0.3
2,737,966 + CSW01_12775 0.50 -1.2
2,737,976 + CSW01_12775 0.51 -1.6
2,737,985 + CSW01_12775 0.52 +1.7
2,737,990 + CSW01_12775 0.53 +0.7
2,738,050 + CSW01_12775 0.60 -0.4
2,738,058 - CSW01_12775 0.61 +0.1
2,738,058 - CSW01_12775 0.61 +0.4
2,738,058 - CSW01_12775 0.61 -0.6
2,738,058 - CSW01_12775 0.61 -1.1
2,738,058 - CSW01_12775 0.61 +1.7
2,738,080 - CSW01_12775 0.64 +0.6
2,738,088 + CSW01_12775 0.65 -0.9
2,738,096 - CSW01_12775 0.66 -0.6
2,738,098 + CSW01_12775 0.66 +1.8
2,738,098 + CSW01_12775 0.66 +1.0
2,738,098 + CSW01_12775 0.66 -0.7
2,738,106 - CSW01_12775 0.67 -0.6
2,738,128 + CSW01_12775 0.70 +0.5
2,738,147 + CSW01_12775 0.72 +0.5
2,738,155 - CSW01_12775 0.73 -0.3
2,738,189 - CSW01_12775 0.77 +0.2
2,738,202 + CSW01_12775 0.79 +0.4
2,738,243 + CSW01_12775 0.84 -0.2
2,738,286 + CSW01_12775 0.90 +1.4
2,738,359 + -1.2
2,738,359 + -0.9
2,738,375 - -2.8
2,738,385 - +0.5
2,738,447 + -2.2
2,738,455 - +0.3
2,738,541 + CSW01_12780 0.23 +0.6
2,738,574 + CSW01_12780 0.40 +1.5
2,738,596 - CSW01_12780 0.52 -0.1
2,738,712 + -0.1
2,738,713 + +0.9
2,738,720 - -0.7
2,738,753 + -1.5
2,738,784 - -1.3
2,738,811 - -3.3
2,738,867 - -0.9
2,738,877 + +0.3
2,738,880 + +0.4
2,738,899 + -0.1
2,738,899 + +1.0
2,738,906 + -0.3
2,738,914 - +0.5
2,738,914 - -1.5
2,739,041 - CSW01_12785 0.12 +0.4
2,739,041 - CSW01_12785 0.12 -0.2
2,739,046 + CSW01_12785 0.12 +1.5
2,739,113 - CSW01_12785 0.19 -3.2
2,739,164 + CSW01_12785 0.24 +0.8
2,739,169 + CSW01_12785 0.24 +1.1
2,739,169 + CSW01_12785 0.24 -4.1
2,739,174 + CSW01_12785 0.25 -1.2
2,739,182 - CSW01_12785 0.26 -0.0
2,739,188 + CSW01_12785 0.26 -3.5
2,739,196 - CSW01_12785 0.27 -1.3
2,739,196 - CSW01_12785 0.27 -1.5
2,739,257 + CSW01_12785 0.33 +2.4
2,739,471 + CSW01_12785 0.55 +1.5
2,739,485 - CSW01_12785 0.56 -2.7
2,739,567 + CSW01_12785 0.64 +1.2
2,739,567 + CSW01_12785 0.64 -1.6
2,739,596 + CSW01_12785 0.67 -0.4
2,739,597 - CSW01_12785 0.67 +0.2
2,739,626 + CSW01_12785 0.70 +0.2

Or see this region's nucleotide sequence