Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_11270

Experiment: ICP1_phage_235.3_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_235.3_MOI_rep1
2,383,939	-		CSW01_11265	0.35	-1.0
2,383,956	+		CSW01_11265	0.37	+1.0
2,383,999	-		CSW01_11265	0.41	-3.6
2,384,026	+		CSW01_11265	0.43	-1.7
2,384,034	-		CSW01_11265	0.44	+1.3
2,384,041	+		CSW01_11265	0.44	-0.5
2,384,319	-		CSW01_11265	0.69	+1.3
2,384,326	-		CSW01_11265	0.69	-0.3
2,384,402	+		CSW01_11265	0.76	-3.5
2,384,470	+		CSW01_11265	0.82	-0.2
2,384,478	-		CSW01_11265	0.83	+1.2
2,384,478	-		CSW01_11265	0.83	-0.0
2,384,478	-		CSW01_11265	0.83	-1.9
2,384,489	+		CSW01_11265	0.84	+0.7
2,384,537	-		CSW01_11265	0.88	-0.5
2,384,547	+		CSW01_11265	0.89	-0.3
2,384,619	-				-1.2
2,384,699	-				+0.0
2,384,722	-				+0.2
2,384,722	-				-4.1
2,384,722	-				+1.1
2,384,878	-				-0.9
2,384,927	-				+0.0
2,384,936	-				-1.9
2,384,936	-				+2.3
2,384,940	+				-2.7
2,384,950	+				+0.5
2,384,950	+				+0.2
2,384,958	-				-2.0
2,385,030	+				-2.8
2,385,038	-				-0.1
2,385,038	-				-0.3
2,385,102	+				+1.0
2,385,105	-				+0.2
2,385,157	-				-0.7
2,385,192	-				+1.3
2,385,192	-				+0.3
2,385,192	-				+0.2
2,385,223	+				+1.4
2,385,450	-				-0.8
2,385,547	-		CSW01_11270	0.10	-1.3
2,385,558	-		CSW01_11270	0.10	-3.6
2,385,592	+		CSW01_11270	0.11	-2.0
2,385,592	+		CSW01_11270	0.11	+0.6
2,385,592	+		CSW01_11270	0.11	-0.4
2,385,592	+		CSW01_11270	0.11	+0.9
2,385,592	+		CSW01_11270	0.11	+0.7
2,385,592	+		CSW01_11270	0.11	+0.5
2,385,595	-		CSW01_11270	0.11	-3.1
2,385,600	-		CSW01_11270	0.11	-1.3
2,385,600	-		CSW01_11270	0.11	+1.0
2,385,600	-		CSW01_11270	0.11	-0.0
2,385,600	-		CSW01_11270	0.11	-1.6
2,385,635	-		CSW01_11270	0.12	+0.5
2,385,703	-		CSW01_11270	0.12	-1.0
2,385,718	-		CSW01_11270	0.13	+0.7
2,385,719	+		CSW01_11270	0.13	+0.8
2,385,719	+		CSW01_11270	0.13	-0.2
2,385,737	-		CSW01_11270	0.13	-2.1
2,385,751	-		CSW01_11270	0.13	-0.7
2,385,875	+		CSW01_11270	0.15	+0.8
2,385,875	+		CSW01_11270	0.15	+1.0
2,385,875	+		CSW01_11270	0.15	+0.8
2,385,875	+		CSW01_11270	0.15	+0.4
2,385,875	+		CSW01_11270	0.15	-3.4
2,385,875	+		CSW01_11270	0.15	-1.1
2,385,875	+		CSW01_11270	0.15	+1.9
2,385,875	+		CSW01_11270	0.15	-0.3
2,385,875	+		CSW01_11270	0.15	+1.3
2,385,875	+		CSW01_11270	0.15	-0.9
2,385,875	+		CSW01_11270	0.15	+0.9
2,385,875	+		CSW01_11270	0.15	+0.9
2,385,875	+		CSW01_11270	0.15	+1.3
2,385,883	-		CSW01_11270	0.15	-0.0
2,385,883	-		CSW01_11270	0.15	-0.0
2,385,883	-		CSW01_11270	0.15	-0.1
2,385,883	-		CSW01_11270	0.15	+0.4
2,385,883	-		CSW01_11270	0.15	+1.1
2,385,883	-		CSW01_11270	0.15	+1.5
2,385,883	-		CSW01_11270	0.15	-0.2
2,385,883	-		CSW01_11270	0.15	+0.1
2,385,883	-		CSW01_11270	0.15	-2.9
2,385,883	-		CSW01_11270	0.15	+0.7
2,385,883	-		CSW01_11270	0.15	+0.2
2,385,883	-		CSW01_11270	0.15	-0.4
2,385,883	-		CSW01_11270	0.15	+1.2
2,385,883	-		CSW01_11270	0.15	+1.1
2,385,883	-		CSW01_11270	0.15	-2.5
2,386,034	-		CSW01_11270	0.17	-0.4
2,386,046	+		CSW01_11270	0.17	+1.0
2,386,054	-		CSW01_11270	0.17	+0.2
2,386,118	+		CSW01_11270	0.18	+1.3
2,386,184	-		CSW01_11270	0.19	-0.7
2,386,196	-		CSW01_11270	0.19	+1.4
2,386,216	+		CSW01_11270	0.20	+1.0
2,386,243	-		CSW01_11270	0.20	+0.0
2,386,247	+		CSW01_11270	0.20	+0.4
2,386,319	+		CSW01_11270	0.21	-1.3
2,386,319	+		CSW01_11270	0.21	-2.7
2,386,321	+		CSW01_11270	0.21	+0.9
2,386,327	-		CSW01_11270	0.21	-0.2
2,386,327	-		CSW01_11270	0.21	-3.0
2,386,327	-		CSW01_11270	0.21	-1.8
2,386,413	-		CSW01_11270	0.22	-0.2
2,386,440	-		CSW01_11270	0.23	+0.2
2,386,524	+		CSW01_11270	0.24	+1.0
2,386,574	-		CSW01_11270	0.24	-0.7
2,386,583	-		CSW01_11270	0.25	+0.4
2,386,653	+		CSW01_11270	0.26	+0.8
2,386,661	-		CSW01_11270	0.26	+1.5
2,386,740	+		CSW01_11270	0.27	+1.3
2,386,770	+		CSW01_11270	0.27	+0.6
2,386,816	-		CSW01_11270	0.28	+0.7
2,386,864	+		CSW01_11270	0.28	+2.3
2,386,920	+		CSW01_11270	0.29	-1.0
2,386,936	-		CSW01_11270	0.29	+0.4
2,386,946	+		CSW01_11270	0.30	-0.0
2,386,969	+		CSW01_11270	0.30	-0.7
2,386,992	+		CSW01_11270	0.30	+1.7
2,387,015	+		CSW01_11270	0.31	-2.3
2,387,050	-		CSW01_11270	0.31	+1.2
2,387,070	+		CSW01_11270	0.31	-0.9
2,387,110	-		CSW01_11270	0.32	-0.6
2,387,123	+		CSW01_11270	0.32	+1.1
2,387,128	+		CSW01_11270	0.32	-3.4
2,387,133	+		CSW01_11270	0.32	-1.8
2,387,133	+		CSW01_11270	0.32	-0.1
2,387,133	+		CSW01_11270	0.32	-0.3
2,387,133	+		CSW01_11270	0.32	+1.5
2,387,138	-		CSW01_11270	0.32	+0.7
2,387,138	-		CSW01_11270	0.32	+2.5
2,387,138	-		CSW01_11270	0.32	+0.8
2,387,141	-		CSW01_11270	0.32	+1.6
2,387,141	-		CSW01_11270	0.32	-0.6
2,387,141	-		CSW01_11270	0.32	+1.5
2,387,141	-		CSW01_11270	0.32	+0.6
2,387,141	-		CSW01_11270	0.32	+1.3
2,387,196	+		CSW01_11270	0.33	+1.4
2,387,196	+		CSW01_11270	0.33	+1.2
2,387,235	-		CSW01_11270	0.34	-3.0
2,387,235	-		CSW01_11270	0.34	-1.0
2,387,236	-		CSW01_11270	0.34	-3.2
2,387,279	+		CSW01_11270	0.34	-2.1
2,387,287	-		CSW01_11270	0.34	+0.5
2,387,287	-		CSW01_11270	0.34	+1.2
2,387,307	+		CSW01_11270	0.35	-0.0
2,387,307	+		CSW01_11270	0.35	-0.7
2,387,399	+		CSW01_11270	0.36	+1.2
2,387,407	-		CSW01_11270	0.36	+1.9
2,387,563	+		CSW01_11270	0.38	-0.0
2,387,572	-		CSW01_11270	0.38	-0.5
2,387,572	-		CSW01_11270	0.38	+1.5
2,387,572	-		CSW01_11270	0.38	-2.0
2,387,580	+		CSW01_11270	0.38	+1.9
2,387,580	+		CSW01_11270	0.38	-1.8
2,387,580	+		CSW01_11270	0.38	+0.2
2,387,586	+		CSW01_11270	0.38	-0.1
2,387,586	+		CSW01_11270	0.38	-0.2
2,387,588	-		CSW01_11270	0.38	-0.8
2,387,588	-		CSW01_11270	0.38	+0.5
2,387,762	+		CSW01_11270	0.41	+0.8
2,387,770	-		CSW01_11270	0.41	+0.9
2,387,770	-		CSW01_11270	0.41	+0.1
2,387,775	+		CSW01_11270	0.41	-0.1
2,387,782	+		CSW01_11270	0.41	+0.9
2,387,877	-		CSW01_11270	0.42	-0.7
2,387,898	-		CSW01_11270	0.43	+0.4
2,387,909	+		CSW01_11270	0.43	-1.2
2,387,934	-		CSW01_11270	0.43	-1.8
2,388,046	+		CSW01_11270	0.45	+0.6
2,388,089	+		CSW01_11270	0.45	-1.5
2,388,198	+		CSW01_11270	0.47	+0.6
2,388,233	+		CSW01_11270	0.47	+1.8
2,388,243	-		CSW01_11270	0.48	+2.5
2,388,313	-		CSW01_11270	0.48	+1.8
2,388,318	-		CSW01_11270	0.49	-0.5
2,388,325	-		CSW01_11270	0.49	+0.1
2,388,336	+		CSW01_11270	0.49	+0.9
2,388,336	+		CSW01_11270	0.49	-3.5
2,388,426	+		CSW01_11270	0.50	+0.1
2,388,473	+		CSW01_11270	0.51	-2.5
2,388,473	+		CSW01_11270	0.51	-1.9
2,388,473	+		CSW01_11270	0.51	+0.4
2,388,481	-		CSW01_11270	0.51	-1.0
2,388,507	+		CSW01_11270	0.51	-0.2
2,388,515	-		CSW01_11270	0.51	-2.5
2,388,580	-		CSW01_11270	0.52	+0.5
2,388,604	+		CSW01_11270	0.52	-0.0
2,388,618	+		CSW01_11270	0.53	+0.6
2,388,652	+		CSW01_11270	0.53	-1.6
2,388,665	+		CSW01_11270	0.53	-1.0
2,388,673	-		CSW01_11270	0.53	-1.5
2,388,735	+		CSW01_11270	0.54	-2.5
2,388,792	+		CSW01_11270	0.55	+0.3
2,388,796	+		CSW01_11270	0.55	+0.7
2,388,887	-		CSW01_11270	0.56	-1.4
2,388,903	-		CSW01_11270	0.57	-1.1
2,388,911	-		CSW01_11270	0.57	+0.9
2,388,962	+		CSW01_11270	0.57	+0.5
2,388,970	-		CSW01_11270	0.58	-0.9
2,389,050	-		CSW01_11270	0.59	-1.0
2,389,172	+		CSW01_11270	0.60	-0.0
2,389,172	+		CSW01_11270	0.60	+1.8
2,389,172	+		CSW01_11270	0.60	-1.5
2,389,172	+		CSW01_11270	0.60	-0.1
2,389,172	+		CSW01_11270	0.60	-2.4
2,389,172	+		CSW01_11270	0.60	+0.7
2,389,172	+		CSW01_11270	0.60	-0.7
2,389,178	-		CSW01_11270	0.60	+1.3
2,389,178	-		CSW01_11270	0.60	+1.5
2,389,180	-		CSW01_11270	0.60	+0.7
2,389,180	-		CSW01_11270	0.60	+1.6
2,389,180	-		CSW01_11270	0.60	+0.5
2,389,180	-		CSW01_11270	0.60	-2.5
2,389,180	-		CSW01_11270	0.60	+1.3
2,389,180	-		CSW01_11270	0.60	-1.0
2,389,180	-		CSW01_11270	0.60	+0.5
2,389,215	+		CSW01_11270	0.61	+0.3
2,389,284	+		CSW01_11270	0.62	+2.1
2,389,284	+		CSW01_11270	0.62	+1.2
2,389,302	-		CSW01_11270	0.62	-2.7
2,389,307	-		CSW01_11270	0.62	+1.2
2,389,309	+		CSW01_11270	0.62	-2.0
2,389,317	-		CSW01_11270	0.62	-1.0
2,389,317	-		CSW01_11270	0.62	-0.9
2,389,332	+		CSW01_11270	0.63	+1.2
2,389,338	-		CSW01_11270	0.63	-2.8
2,389,414	+		CSW01_11270	0.64	+2.6
2,389,460	+		CSW01_11270	0.64	+1.4
2,389,619	+		CSW01_11270	0.67	+0.7
2,389,631	+		CSW01_11270	0.67	-0.2
2,389,683	+		CSW01_11270	0.67	+0.1
2,389,692	-		CSW01_11270	0.68	-1.6
2,389,754	-		CSW01_11270	0.68	-0.7
2,389,756	+		CSW01_11270	0.68	-0.9
2,389,836	+		CSW01_11270	0.70	-0.4
2,389,836	+		CSW01_11270	0.70	+1.3
2,389,923	-		CSW01_11270	0.71	+0.9
2,390,093	+		CSW01_11270	0.73	+1.3
2,390,228	-		CSW01_11270	0.75	+1.5
2,390,243	+		CSW01_11270	0.75	+0.5
2,390,243	+		CSW01_11270	0.75	+1.7
2,390,283	+		CSW01_11270	0.76	-1.4
2,390,304	-		CSW01_11270	0.76	+1.6
2,390,307	+		CSW01_11270	0.76	-0.2
2,390,317	+		CSW01_11270	0.76	+0.1
2,390,539	+		CSW01_11270	0.79	-1.2
2,390,539	+		CSW01_11270	0.79	+1.1
2,390,547	-		CSW01_11270	0.79	+0.8
2,390,552	-		CSW01_11270	0.79	-0.2
2,390,553	+		CSW01_11270	0.79	+1.7
2,390,561	-		CSW01_11270	0.80	+2.3
2,390,561	-		CSW01_11270	0.80	+0.6
2,390,561	-		CSW01_11270	0.80	-1.0
2,390,577	-		CSW01_11270	0.80	-0.1
2,390,581	+		CSW01_11270	0.80	-1.1
2,390,588	-		CSW01_11270	0.80	-2.0
2,390,598	+		CSW01_11270	0.80	-1.2
2,390,675	-		CSW01_11270	0.81	+0.5
2,390,679	+		CSW01_11270	0.81	+1.0
2,390,679	+		CSW01_11270	0.81	+1.6
2,390,680	-		CSW01_11270	0.81	-2.0
2,390,707	-		CSW01_11270	0.82	+1.3
2,390,726	+		CSW01_11270	0.82	+0.5
2,390,726	+		CSW01_11270	0.82	-1.0
2,390,726	+		CSW01_11270	0.82	-0.7
2,390,734	-		CSW01_11270	0.82	+0.9
2,390,734	-		CSW01_11270	0.82	+1.2
2,390,734	-		CSW01_11270	0.82	+1.3
2,390,734	-		CSW01_11270	0.82	+0.9
2,390,734	-		CSW01_11270	0.82	+0.4
2,390,734	-		CSW01_11270	0.82	-1.0
2,390,734	-		CSW01_11270	0.82	+0.6
2,390,777	+		CSW01_11270	0.83	-2.3
2,390,803	+		CSW01_11270	0.83	-0.7
2,390,811	-		CSW01_11270	0.83	+2.5
2,390,811	-		CSW01_11270	0.83	+1.6
2,390,811	-		CSW01_11270	0.83	-1.2
2,390,839	+		CSW01_11270	0.83	-1.2
2,390,847	-		CSW01_11270	0.83	-0.4
2,390,847	-		CSW01_11270	0.83	+0.1
2,390,847	-		CSW01_11270	0.83	+0.2
2,390,894	+		CSW01_11270	0.84	-1.9
2,391,002	-		CSW01_11270	0.86	+1.0
2,391,021	-		CSW01_11270	0.86	-0.1
2,391,053	+		CSW01_11270	0.86	+0.9
2,391,053	+		CSW01_11270	0.86	-0.1
2,391,061	-		CSW01_11270	0.86	-0.7
2,391,061	-		CSW01_11270	0.86	+1.2
2,391,061	-		CSW01_11270	0.86	+1.0
2,391,121	-		CSW01_11270	0.87	-0.8
2,391,123	+		CSW01_11270	0.87	+0.6
2,391,123	+		CSW01_11270	0.87	+1.1
2,391,123	+		CSW01_11270	0.87	+2.9
2,391,131	-		CSW01_11270	0.87	+0.4
2,391,131	-		CSW01_11270	0.87	-2.0
2,391,131	-		CSW01_11270	0.87	+2.0
2,391,212	+		CSW01_11270	0.89	+0.9
2,391,310	-		CSW01_11270	0.90	-1.0
2,391,330	+				-1.0
2,391,333	-				+1.6
2,391,347	+				+0.5
2,391,347	+				-2.2
2,391,347	+				+0.9
2,391,347	+				+1.2
2,391,355	-				-0.1
2,391,365	+				-0.5
2,391,386	+				+1.0
2,391,578	+				-2.0
2,391,673	+				-0.0
2,391,689	-				-0.7
2,391,694	-				-1.6
2,391,694	-				+1.3
2,391,696	+				+0.5
2,391,716	+				+0.2
2,391,809	+				-0.5
2,391,816	-				+0.5
2,391,816	-				+3.1
2,391,818	+				-2.5
2,391,955	+				+0.0
2,392,052	-				+0.1
2,392,065	+				-0.5
2,392,066	-				+0.9
2,392,077	+				-0.4
2,392,192	+				+0.1
2,392,197	+				+0.2
2,392,239	+				-0.9
2,392,243	+				+0.3
2,392,247	-				+0.8
2,392,299	+				-0.5
2,392,299	+				+0.6
2,392,307	-				+1.1
2,392,388	-		CSW01_11275	0.11	+1.5
2,392,455	-		CSW01_11275	0.19	+2.5
2,392,487	+		CSW01_11275	0.23	+1.3
2,392,545	-		CSW01_11275	0.30	-1.0
2,392,632	+		CSW01_11275	0.41	-1.2
2,392,864	+		CSW01_11275	0.69	+2.6
2,392,872	-		CSW01_11275	0.70	-1.7
2,392,872	-		CSW01_11275	0.70	+1.1
2,392,898	-		CSW01_11275	0.73	-0.4
2,392,902	+		CSW01_11275	0.74	-0.9
2,392,910	-		CSW01_11275	0.75	+0.9
2,392,920	-		CSW01_11275	0.76	+2.3
2,392,940	+		CSW01_11275	0.78	-2.0
2,392,940	+		CSW01_11275	0.78	+2.0
2,392,979	+		CSW01_11275	0.83	-2.2
2,393,018	-		CSW01_11275	0.88	-0.7