Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_11100

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_11090 and CSW01_11095 are separated by 73 nucleotidesCSW01_11095 and CSW01_11100 are separated by 9 nucleotidesCSW01_11100 and CSW01_11105 overlap by 4 nucleotidesCSW01_11105 and CSW01_11110 are separated by 103 nucleotides CSW01_11090: CSW01_11090 - XRE family transcriptional regulator, at 2,354,778 to 2,355,116 _11090 CSW01_11095: CSW01_11095 - DUF262 domain-containing protein, at 2,355,190 to 2,355,726 _11095 CSW01_11100: CSW01_11100 - replication endonuclease, at 2,355,736 to 2,358,321 _11100 CSW01_11105: CSW01_11105 - hypothetical protein, at 2,358,318 to 2,358,902 _11105 CSW01_11110: CSW01_11110 - DNA methyltransferase, at 2,359,006 to 2,359,623 _11110 Position (kb) 2355 2356 2357 2358 2359Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2354.848 kb on + strand, within CSW01_11090at 2354.902 kb on + strand, within CSW01_11090at 2354.902 kb on + strand, within CSW01_11090at 2354.902 kb on + strand, within CSW01_11090at 2354.902 kb on + strand, within CSW01_11090at 2354.902 kb on + strand, within CSW01_11090at 2354.902 kb on + strand, within CSW01_11090at 2354.902 kb on + strand, within CSW01_11090at 2354.902 kb on + strand, within CSW01_11090at 2354.902 kb on + strand, within CSW01_11090at 2354.902 kb on + strand, within CSW01_11090at 2354.902 kb on + strand, within CSW01_11090at 2354.907 kb on + strand, within CSW01_11090at 2354.910 kb on - strand, within CSW01_11090at 2354.912 kb on + strand, within CSW01_11090at 2354.912 kb on + strand, within CSW01_11090at 2354.912 kb on + strand, within CSW01_11090at 2354.932 kb on - strand, within CSW01_11090at 2354.947 kb on - strand, within CSW01_11090at 2355.195 kb on - strandat 2355.271 kb on + strand, within CSW01_11095at 2355.392 kb on + strand, within CSW01_11095at 2355.481 kb on + strand, within CSW01_11095at 2355.481 kb on + strand, within CSW01_11095at 2355.489 kb on - strand, within CSW01_11095at 2355.489 kb on - strand, within CSW01_11095at 2355.495 kb on - strand, within CSW01_11095at 2355.510 kb on + strand, within CSW01_11095at 2355.618 kb on + strand, within CSW01_11095at 2355.638 kb on - strand, within CSW01_11095at 2355.638 kb on - strand, within CSW01_11095at 2355.653 kb on - strand, within CSW01_11095at 2355.685 kb on - strandat 2355.775 kb on + strandat 2355.840 kb on + strandat 2355.985 kb on + strandat 2355.988 kb on - strandat 2355.994 kb on - strandat 2356.049 kb on - strand, within CSW01_11100at 2356.049 kb on - strand, within CSW01_11100at 2356.049 kb on - strand, within CSW01_11100at 2356.079 kb on + strand, within CSW01_11100at 2356.079 kb on + strand, within CSW01_11100at 2356.084 kb on + strand, within CSW01_11100at 2356.087 kb on - strand, within CSW01_11100at 2356.087 kb on - strand, within CSW01_11100at 2356.087 kb on - strand, within CSW01_11100at 2356.111 kb on + strand, within CSW01_11100at 2356.207 kb on + strand, within CSW01_11100at 2356.217 kb on + strand, within CSW01_11100at 2356.283 kb on + strand, within CSW01_11100at 2356.393 kb on - strand, within CSW01_11100at 2356.408 kb on + strand, within CSW01_11100at 2356.416 kb on - strand, within CSW01_11100at 2356.416 kb on - strand, within CSW01_11100at 2356.416 kb on - strand, within CSW01_11100at 2356.508 kb on + strand, within CSW01_11100at 2356.508 kb on + strand, within CSW01_11100at 2356.516 kb on - strand, within CSW01_11100at 2356.516 kb on - strand, within CSW01_11100at 2356.516 kb on - strand, within CSW01_11100at 2356.542 kb on + strand, within CSW01_11100at 2356.550 kb on - strand, within CSW01_11100at 2356.550 kb on - strand, within CSW01_11100at 2356.550 kb on - strand, within CSW01_11100at 2356.550 kb on - strand, within CSW01_11100at 2356.563 kb on - strand, within CSW01_11100at 2356.573 kb on - strand, within CSW01_11100at 2356.674 kb on + strand, within CSW01_11100at 2356.680 kb on - strand, within CSW01_11100at 2356.815 kb on - strand, within CSW01_11100at 2356.847 kb on - strand, within CSW01_11100at 2356.872 kb on + strand, within CSW01_11100at 2356.936 kb on + strand, within CSW01_11100at 2356.942 kb on + strand, within CSW01_11100at 2356.960 kb on + strand, within CSW01_11100at 2356.982 kb on + strand, within CSW01_11100at 2356.990 kb on - strand, within CSW01_11100at 2357.063 kb on - strand, within CSW01_11100at 2357.069 kb on - strand, within CSW01_11100at 2357.086 kb on + strand, within CSW01_11100at 2357.094 kb on - strand, within CSW01_11100at 2357.094 kb on - strand, within CSW01_11100at 2357.094 kb on - strand, within CSW01_11100at 2357.128 kb on + strand, within CSW01_11100at 2357.136 kb on - strand, within CSW01_11100at 2357.145 kb on + strand, within CSW01_11100at 2357.153 kb on - strand, within CSW01_11100at 2357.189 kb on + strand, within CSW01_11100at 2357.199 kb on - strand, within CSW01_11100at 2357.232 kb on - strand, within CSW01_11100at 2357.232 kb on - strand, within CSW01_11100at 2357.232 kb on - strand, within CSW01_11100at 2357.267 kb on - strand, within CSW01_11100at 2357.288 kb on - strand, within CSW01_11100at 2357.289 kb on - strand, within CSW01_11100at 2357.313 kb on - strand, within CSW01_11100at 2357.341 kb on + strand, within CSW01_11100at 2357.390 kb on + strand, within CSW01_11100at 2357.399 kb on - strand, within CSW01_11100at 2357.442 kb on - strand, within CSW01_11100at 2357.443 kb on + strand, within CSW01_11100at 2357.469 kb on - strand, within CSW01_11100at 2357.491 kb on + strand, within CSW01_11100at 2357.579 kb on - strand, within CSW01_11100at 2357.630 kb on + strand, within CSW01_11100at 2357.638 kb on - strand, within CSW01_11100at 2357.638 kb on - strand, within CSW01_11100at 2357.711 kb on + strand, within CSW01_11100at 2357.749 kb on + strand, within CSW01_11100at 2357.878 kb on + strand, within CSW01_11100at 2357.878 kb on + strand, within CSW01_11100at 2357.878 kb on + strand, within CSW01_11100at 2357.886 kb on - strand, within CSW01_11100at 2357.988 kb on - strand, within CSW01_11100at 2358.001 kb on + strand, within CSW01_11100at 2358.009 kb on - strand, within CSW01_11100at 2358.076 kb on - strandat 2358.096 kb on + strandat 2358.103 kb on + strandat 2358.153 kb on + strandat 2358.183 kb on + strandat 2358.241 kb on - strandat 2358.324 kb on + strandat 2358.366 kb on - strandat 2358.381 kb on + strand, within CSW01_11105at 2358.389 kb on - strand, within CSW01_11105at 2358.606 kb on - strand, within CSW01_11105at 2358.627 kb on - strand, within CSW01_11105at 2358.641 kb on - strand, within CSW01_11105at 2358.693 kb on + strand, within CSW01_11105at 2358.723 kb on - strand, within CSW01_11105at 2358.726 kb on - strand, within CSW01_11105at 2358.804 kb on + strand, within CSW01_11105at 2358.817 kb on - strand, within CSW01_11105at 2358.817 kb on - strand, within CSW01_11105at 2358.993 kb on + strandat 2358.993 kb on + strandat 2358.993 kb on + strandat 2359.002 kb on - strandat 2359.031 kb on + strandat 2359.092 kb on + strand, within CSW01_11110at 2359.100 kb on - strand, within CSW01_11110at 2359.116 kb on + strand, within CSW01_11110at 2359.116 kb on + strand, within CSW01_11110at 2359.125 kb on - strand, within CSW01_11110at 2359.182 kb on + strand, within CSW01_11110at 2359.313 kb on + strand, within CSW01_11110

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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2,354,848 + CSW01_11090 0.21 -1.1
2,354,902 + CSW01_11090 0.37 +0.2
2,354,902 + CSW01_11090 0.37 -0.5
2,354,902 + CSW01_11090 0.37 +0.5
2,354,902 + CSW01_11090 0.37 +0.7
2,354,902 + CSW01_11090 0.37 -0.9
2,354,902 + CSW01_11090 0.37 +1.4
2,354,902 + CSW01_11090 0.37 +2.7
2,354,902 + CSW01_11090 0.37 -0.0
2,354,902 + CSW01_11090 0.37 -0.7
2,354,902 + CSW01_11090 0.37 +0.1
2,354,902 + CSW01_11090 0.37 -1.1
2,354,907 + CSW01_11090 0.38 -2.0
2,354,910 - CSW01_11090 0.39 +0.0
2,354,912 + CSW01_11090 0.40 +1.1
2,354,912 + CSW01_11090 0.40 -3.1
2,354,912 + CSW01_11090 0.40 -2.0
2,354,932 - CSW01_11090 0.45 +2.4
2,354,947 - CSW01_11090 0.50 -2.2
2,355,195 - +0.2
2,355,271 + CSW01_11095 0.15 +0.4
2,355,392 + CSW01_11095 0.38 +1.0
2,355,481 + CSW01_11095 0.54 -2.9
2,355,481 + CSW01_11095 0.54 +0.6
2,355,489 - CSW01_11095 0.56 +0.7
2,355,489 - CSW01_11095 0.56 +0.4
2,355,495 - CSW01_11095 0.57 -3.5
2,355,510 + CSW01_11095 0.60 +0.2
2,355,618 + CSW01_11095 0.80 +0.2
2,355,638 - CSW01_11095 0.83 +0.1
2,355,638 - CSW01_11095 0.83 -0.1
2,355,653 - CSW01_11095 0.86 -0.7
2,355,685 - -3.8
2,355,775 + +1.3
2,355,840 + +0.2
2,355,985 + +1.8
2,355,988 - -1.8
2,355,994 - +2.4
2,356,049 - CSW01_11100 0.12 -3.3
2,356,049 - CSW01_11100 0.12 -0.8
2,356,049 - CSW01_11100 0.12 -0.1
2,356,079 + CSW01_11100 0.13 +1.3
2,356,079 + CSW01_11100 0.13 +1.0
2,356,084 + CSW01_11100 0.13 -2.6
2,356,087 - CSW01_11100 0.14 +0.4
2,356,087 - CSW01_11100 0.14 -1.9
2,356,087 - CSW01_11100 0.14 -0.4
2,356,111 + CSW01_11100 0.15 +1.1
2,356,207 + CSW01_11100 0.18 -2.4
2,356,217 + CSW01_11100 0.19 -0.1
2,356,283 + CSW01_11100 0.21 +1.3
2,356,393 - CSW01_11100 0.25 +2.2
2,356,408 + CSW01_11100 0.26 -2.2
2,356,416 - CSW01_11100 0.26 -2.7
2,356,416 - CSW01_11100 0.26 +0.3
2,356,416 - CSW01_11100 0.26 +1.7
2,356,508 + CSW01_11100 0.30 +0.6
2,356,508 + CSW01_11100 0.30 -0.6
2,356,516 - CSW01_11100 0.30 +1.4
2,356,516 - CSW01_11100 0.30 -0.7
2,356,516 - CSW01_11100 0.30 +1.0
2,356,542 + CSW01_11100 0.31 -0.4
2,356,550 - CSW01_11100 0.31 +0.6
2,356,550 - CSW01_11100 0.31 -1.1
2,356,550 - CSW01_11100 0.31 +1.6
2,356,550 - CSW01_11100 0.31 -3.2
2,356,563 - CSW01_11100 0.32 +0.0
2,356,573 - CSW01_11100 0.32 -2.5
2,356,674 + CSW01_11100 0.36 +0.8
2,356,680 - CSW01_11100 0.37 +0.9
2,356,815 - CSW01_11100 0.42 -2.0
2,356,847 - CSW01_11100 0.43 +0.6
2,356,872 + CSW01_11100 0.44 +1.0
2,356,936 + CSW01_11100 0.46 +0.5
2,356,942 + CSW01_11100 0.47 -0.8
2,356,960 + CSW01_11100 0.47 -1.4
2,356,982 + CSW01_11100 0.48 +0.1
2,356,990 - CSW01_11100 0.48 +2.8
2,357,063 - CSW01_11100 0.51 +0.6
2,357,069 - CSW01_11100 0.52 +0.2
2,357,086 + CSW01_11100 0.52 -1.5
2,357,094 - CSW01_11100 0.53 +0.3
2,357,094 - CSW01_11100 0.53 -1.1
2,357,094 - CSW01_11100 0.53 +0.5
2,357,128 + CSW01_11100 0.54 -2.5
2,357,136 - CSW01_11100 0.54 +0.6
2,357,145 + CSW01_11100 0.54 -0.1
2,357,153 - CSW01_11100 0.55 +2.2
2,357,189 + CSW01_11100 0.56 -0.0
2,357,199 - CSW01_11100 0.57 +1.0
2,357,232 - CSW01_11100 0.58 +2.0
2,357,232 - CSW01_11100 0.58 -0.5
2,357,232 - CSW01_11100 0.58 -2.5
2,357,267 - CSW01_11100 0.59 +1.7
2,357,288 - CSW01_11100 0.60 +1.3
2,357,289 - CSW01_11100 0.60 +0.4
2,357,313 - CSW01_11100 0.61 +0.6
2,357,341 + CSW01_11100 0.62 +0.5
2,357,390 + CSW01_11100 0.64 -0.3
2,357,399 - CSW01_11100 0.64 -0.4
2,357,442 - CSW01_11100 0.66 +0.3
2,357,443 + CSW01_11100 0.66 +1.9
2,357,469 - CSW01_11100 0.67 +0.4
2,357,491 + CSW01_11100 0.68 +1.0
2,357,579 - CSW01_11100 0.71 -0.8
2,357,630 + CSW01_11100 0.73 +2.2
2,357,638 - CSW01_11100 0.74 -0.2
2,357,638 - CSW01_11100 0.74 +0.3
2,357,711 + CSW01_11100 0.76 -1.0
2,357,749 + CSW01_11100 0.78 -1.0
2,357,878 + CSW01_11100 0.83 -1.6
2,357,878 + CSW01_11100 0.83 +0.6
2,357,878 + CSW01_11100 0.83 +0.2
2,357,886 - CSW01_11100 0.83 +0.7
2,357,988 - CSW01_11100 0.87 -0.1
2,358,001 + CSW01_11100 0.88 -3.0
2,358,009 - CSW01_11100 0.88 +1.3
2,358,076 - +1.1
2,358,096 + -0.0
2,358,103 + -1.0
2,358,153 + -0.2
2,358,183 + +3.0
2,358,241 - -0.0
2,358,324 + +2.2
2,358,366 - -0.2
2,358,381 + CSW01_11105 0.11 -1.7
2,358,389 - CSW01_11105 0.12 -1.7
2,358,606 - CSW01_11105 0.49 +0.6
2,358,627 - CSW01_11105 0.53 -0.1
2,358,641 - CSW01_11105 0.55 +0.4
2,358,693 + CSW01_11105 0.64 +0.8
2,358,723 - CSW01_11105 0.69 +0.4
2,358,726 - CSW01_11105 0.70 -1.9
2,358,804 + CSW01_11105 0.83 -0.5
2,358,817 - CSW01_11105 0.85 -2.5
2,358,817 - CSW01_11105 0.85 +1.0
2,358,993 + -1.0
2,358,993 + +0.2
2,358,993 + +0.7
2,359,002 - -2.3
2,359,031 + +0.2
2,359,092 + CSW01_11110 0.14 +0.5
2,359,100 - CSW01_11110 0.15 -1.8
2,359,116 + CSW01_11110 0.18 +2.8
2,359,116 + CSW01_11110 0.18 -1.0
2,359,125 - CSW01_11110 0.19 -2.1
2,359,182 + CSW01_11110 0.28 +0.4
2,359,313 + CSW01_11110 0.50 +0.8

Or see this region's nucleotide sequence