Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07300

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_07290 and CSW01_07295 are separated by 125 nucleotidesCSW01_07295 and CSW01_07300 are separated by 340 nucleotidesCSW01_07300 and CSW01_07305 are separated by 108 nucleotidesCSW01_07305 and CSW01_07310 overlap by 4 nucleotides CSW01_07290: CSW01_07290 - replication initiation factor family protein, at 1,563,574 to 1,564,653 _07290 CSW01_07295: CSW01_07295 - transcriptional regulator, at 1,564,779 to 1,565,117 _07295 CSW01_07300: CSW01_07300 - lipoate--protein ligase, at 1,565,458 to 1,565,610 _07300 CSW01_07305: CSW01_07305 - enterotoxin, at 1,565,719 to 1,566,093 _07305 CSW01_07310: CSW01_07310 - enterotoxin, at 1,566,090 to 1,566,866 _07310 Position (kb) 1565 1566Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1565.567 kb on + strand, within CSW01_07300at 1565.580 kb on + strand, within CSW01_07300at 1565.580 kb on + strand, within CSW01_07300at 1565.580 kb on + strand, within CSW01_07300at 1565.580 kb on + strand, within CSW01_07300at 1565.580 kb on + strand, within CSW01_07300at 1565.580 kb on + strand, within CSW01_07300at 1565.580 kb on + strand, within CSW01_07300at 1565.580 kb on + strand, within CSW01_07300at 1565.580 kb on + strand, within CSW01_07300at 1565.580 kb on + strand, within CSW01_07300at 1565.595 kb on + strandat 1565.605 kb on + strandat 1565.605 kb on + strandat 1565.646 kb on - strandat 1565.661 kb on - strandat 1565.694 kb on + strandat 1565.702 kb on - strandat 1565.802 kb on + strand, within CSW01_07305at 1565.805 kb on + strand, within CSW01_07305at 1565.810 kb on + strand, within CSW01_07305at 1565.810 kb on - strand, within CSW01_07305at 1565.813 kb on - strand, within CSW01_07305at 1565.817 kb on + strand, within CSW01_07305at 1565.817 kb on + strand, within CSW01_07305at 1565.817 kb on + strand, within CSW01_07305at 1565.817 kb on + strand, within CSW01_07305at 1565.822 kb on + strand, within CSW01_07305at 1565.822 kb on + strand, within CSW01_07305at 1565.824 kb on - strand, within CSW01_07305at 1565.825 kb on - strand, within CSW01_07305at 1565.825 kb on - strand, within CSW01_07305at 1565.825 kb on - strand, within CSW01_07305at 1565.825 kb on - strand, within CSW01_07305at 1565.830 kb on - strand, within CSW01_07305at 1565.830 kb on - strand, within CSW01_07305at 1565.830 kb on - strand, within CSW01_07305at 1565.869 kb on + strand, within CSW01_07305at 1565.992 kb on + strand, within CSW01_07305at 1566.044 kb on + strand, within CSW01_07305at 1566.045 kb on - strand, within CSW01_07305at 1566.109 kb on + strandat 1566.185 kb on + strand, within CSW01_07310at 1566.220 kb on + strand, within CSW01_07310at 1566.228 kb on - strand, within CSW01_07310at 1566.228 kb on - strand, within CSW01_07310at 1566.230 kb on + strand, within CSW01_07310at 1566.236 kb on + strand, within CSW01_07310at 1566.237 kb on + strand, within CSW01_07310at 1566.237 kb on + strand, within CSW01_07310at 1566.238 kb on - strand, within CSW01_07310at 1566.245 kb on - strand, within CSW01_07310at 1566.245 kb on - strand, within CSW01_07310at 1566.255 kb on + strand, within CSW01_07310at 1566.255 kb on + strand, within CSW01_07310at 1566.263 kb on - strand, within CSW01_07310at 1566.263 kb on - strand, within CSW01_07310at 1566.263 kb on - strand, within CSW01_07310at 1566.263 kb on - strand, within CSW01_07310at 1566.263 kb on - strand, within CSW01_07310at 1566.263 kb on - strand, within CSW01_07310at 1566.263 kb on - strand, within CSW01_07310at 1566.271 kb on - strand, within CSW01_07310at 1566.281 kb on + strand, within CSW01_07310at 1566.282 kb on - strand, within CSW01_07310at 1566.282 kb on - strand, within CSW01_07310at 1566.282 kb on - strand, within CSW01_07310at 1566.282 kb on - strand, within CSW01_07310at 1566.288 kb on + strand, within CSW01_07310at 1566.289 kb on - strand, within CSW01_07310at 1566.289 kb on - strand, within CSW01_07310at 1566.289 kb on - strand, within CSW01_07310at 1566.295 kb on + strand, within CSW01_07310at 1566.295 kb on + strand, within CSW01_07310at 1566.303 kb on - strand, within CSW01_07310at 1566.303 kb on - strand, within CSW01_07310at 1566.303 kb on - strand, within CSW01_07310at 1566.303 kb on - strand, within CSW01_07310at 1566.303 kb on - strand, within CSW01_07310at 1566.303 kb on - strand, within CSW01_07310at 1566.303 kb on - strand, within CSW01_07310at 1566.303 kb on - strand, within CSW01_07310at 1566.303 kb on - strand, within CSW01_07310at 1566.316 kb on - strand, within CSW01_07310at 1566.323 kb on + strand, within CSW01_07310at 1566.325 kb on - strand, within CSW01_07310at 1566.327 kb on + strand, within CSW01_07310at 1566.368 kb on + strand, within CSW01_07310at 1566.368 kb on + strand, within CSW01_07310at 1566.376 kb on + strand, within CSW01_07310at 1566.387 kb on + strand, within CSW01_07310at 1566.393 kb on + strand, within CSW01_07310at 1566.401 kb on - strand, within CSW01_07310at 1566.421 kb on - strand, within CSW01_07310at 1566.452 kb on + strand, within CSW01_07310at 1566.462 kb on + strand, within CSW01_07310at 1566.462 kb on + strand, within CSW01_07310at 1566.476 kb on + strand, within CSW01_07310at 1566.491 kb on + strand, within CSW01_07310at 1566.496 kb on + strand, within CSW01_07310at 1566.496 kb on + strand, within CSW01_07310at 1566.496 kb on + strand, within CSW01_07310at 1566.496 kb on + strand, within CSW01_07310at 1566.496 kb on + strand, within CSW01_07310at 1566.499 kb on + strand, within CSW01_07310at 1566.499 kb on - strand, within CSW01_07310at 1566.499 kb on - strand, within CSW01_07310at 1566.504 kb on - strand, within CSW01_07310at 1566.504 kb on - strand, within CSW01_07310at 1566.504 kb on - strand, within CSW01_07310at 1566.507 kb on - strand, within CSW01_07310at 1566.515 kb on - strand, within CSW01_07310at 1566.525 kb on - strand, within CSW01_07310at 1566.562 kb on - strand, within CSW01_07310at 1566.602 kb on + strand, within CSW01_07310

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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1,565,567 + CSW01_07300 0.71 -1.9
1,565,580 + CSW01_07300 0.80 -2.7
1,565,580 + CSW01_07300 0.80 -2.2
1,565,580 + CSW01_07300 0.80 +1.9
1,565,580 + CSW01_07300 0.80 -0.1
1,565,580 + CSW01_07300 0.80 -1.9
1,565,580 + CSW01_07300 0.80 +0.5
1,565,580 + CSW01_07300 0.80 -1.3
1,565,580 + CSW01_07300 0.80 -1.2
1,565,580 + CSW01_07300 0.80 -2.7
1,565,580 + CSW01_07300 0.80 -0.3
1,565,595 + -1.4
1,565,605 + -2.3
1,565,605 + +0.0
1,565,646 - -1.9
1,565,661 - +0.7
1,565,694 + +0.2
1,565,702 - +1.5
1,565,802 + CSW01_07305 0.22 -2.5
1,565,805 + CSW01_07305 0.23 +0.7
1,565,810 + CSW01_07305 0.24 -2.6
1,565,810 - CSW01_07305 0.24 +0.2
1,565,813 - CSW01_07305 0.25 -1.3
1,565,817 + CSW01_07305 0.26 -2.6
1,565,817 + CSW01_07305 0.26 +0.8
1,565,817 + CSW01_07305 0.26 -0.9
1,565,817 + CSW01_07305 0.26 +0.8
1,565,822 + CSW01_07305 0.27 -0.4
1,565,822 + CSW01_07305 0.27 +1.0
1,565,824 - CSW01_07305 0.28 -1.1
1,565,825 - CSW01_07305 0.28 -0.4
1,565,825 - CSW01_07305 0.28 +0.3
1,565,825 - CSW01_07305 0.28 +1.5
1,565,825 - CSW01_07305 0.28 -2.7
1,565,830 - CSW01_07305 0.30 +0.2
1,565,830 - CSW01_07305 0.30 +0.6
1,565,830 - CSW01_07305 0.30 +0.5
1,565,869 + CSW01_07305 0.40 -2.1
1,565,992 + CSW01_07305 0.73 +2.0
1,566,044 + CSW01_07305 0.87 -0.2
1,566,045 - CSW01_07305 0.87 -1.9
1,566,109 + +0.2
1,566,185 + CSW01_07310 0.12 -0.0
1,566,220 + CSW01_07310 0.17 +0.8
1,566,228 - CSW01_07310 0.18 -1.6
1,566,228 - CSW01_07310 0.18 +0.4
1,566,230 + CSW01_07310 0.18 -2.1
1,566,236 + CSW01_07310 0.19 -1.6
1,566,237 + CSW01_07310 0.19 -1.3
1,566,237 + CSW01_07310 0.19 +1.4
1,566,238 - CSW01_07310 0.19 +1.1
1,566,245 - CSW01_07310 0.20 +0.9
1,566,245 - CSW01_07310 0.20 -0.2
1,566,255 + CSW01_07310 0.21 +0.2
1,566,255 + CSW01_07310 0.21 -2.4
1,566,263 - CSW01_07310 0.22 +0.3
1,566,263 - CSW01_07310 0.22 +0.7
1,566,263 - CSW01_07310 0.22 -2.0
1,566,263 - CSW01_07310 0.22 -1.1
1,566,263 - CSW01_07310 0.22 +0.1
1,566,263 - CSW01_07310 0.22 -0.5
1,566,263 - CSW01_07310 0.22 +1.3
1,566,271 - CSW01_07310 0.23 -0.1
1,566,281 + CSW01_07310 0.25 +1.0
1,566,282 - CSW01_07310 0.25 +1.8
1,566,282 - CSW01_07310 0.25 -0.1
1,566,282 - CSW01_07310 0.25 +1.3
1,566,282 - CSW01_07310 0.25 +0.8
1,566,288 + CSW01_07310 0.25 -0.6
1,566,289 - CSW01_07310 0.26 +0.4
1,566,289 - CSW01_07310 0.26 -0.4
1,566,289 - CSW01_07310 0.26 -1.9
1,566,295 + CSW01_07310 0.26 -0.3
1,566,295 + CSW01_07310 0.26 +0.1
1,566,303 - CSW01_07310 0.27 +0.7
1,566,303 - CSW01_07310 0.27 -1.3
1,566,303 - CSW01_07310 0.27 -0.4
1,566,303 - CSW01_07310 0.27 +1.4
1,566,303 - CSW01_07310 0.27 -1.0
1,566,303 - CSW01_07310 0.27 -1.9
1,566,303 - CSW01_07310 0.27 +0.2
1,566,303 - CSW01_07310 0.27 -0.1
1,566,303 - CSW01_07310 0.27 +0.1
1,566,316 - CSW01_07310 0.29 +2.0
1,566,323 + CSW01_07310 0.30 -0.1
1,566,325 - CSW01_07310 0.30 +0.1
1,566,327 + CSW01_07310 0.31 +1.5
1,566,368 + CSW01_07310 0.36 -0.6
1,566,368 + CSW01_07310 0.36 +0.1
1,566,376 + CSW01_07310 0.37 -1.6
1,566,387 + CSW01_07310 0.38 -0.1
1,566,393 + CSW01_07310 0.39 -2.7
1,566,401 - CSW01_07310 0.40 -1.8
1,566,421 - CSW01_07310 0.43 -1.0
1,566,452 + CSW01_07310 0.47 +0.2
1,566,462 + CSW01_07310 0.48 +1.5
1,566,462 + CSW01_07310 0.48 +0.7
1,566,476 + CSW01_07310 0.50 -0.9
1,566,491 + CSW01_07310 0.52 +0.7
1,566,496 + CSW01_07310 0.52 -0.0
1,566,496 + CSW01_07310 0.52 +2.1
1,566,496 + CSW01_07310 0.52 -0.9
1,566,496 + CSW01_07310 0.52 -0.2
1,566,496 + CSW01_07310 0.52 +1.3
1,566,499 + CSW01_07310 0.53 +1.5
1,566,499 - CSW01_07310 0.53 +0.3
1,566,499 - CSW01_07310 0.53 -0.2
1,566,504 - CSW01_07310 0.53 +0.3
1,566,504 - CSW01_07310 0.53 -0.2
1,566,504 - CSW01_07310 0.53 -0.5
1,566,507 - CSW01_07310 0.54 -0.9
1,566,515 - CSW01_07310 0.55 +0.2
1,566,525 - CSW01_07310 0.56 -0.1
1,566,562 - CSW01_07310 0.61 -1.1
1,566,602 + CSW01_07310 0.66 -2.9

Or see this region's nucleotide sequence