Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04540

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04535 and CSW01_04540 overlap by 44 nucleotidesCSW01_04540 and CSW01_04545 are separated by 3 nucleotides CSW01_04535: CSW01_04535 - N-acetyltransferase, at 943,106 to 943,729 _04535 CSW01_04540: CSW01_04540 - DUF3301 domain-containing protein, at 943,686 to 943,988 _04540 CSW01_04545: CSW01_04545 - DUF3549 domain-containing protein, at 943,992 to 945,029 _04545 Position (kb) 943 944Strain fitness (log2 ratio) -3 -2 -1 0 1at 942.719 kb on + strandat 942.719 kb on + strandat 942.727 kb on - strandat 942.752 kb on - strandat 942.792 kb on + strandat 942.795 kb on - strandat 942.807 kb on + strandat 942.813 kb on + strandat 942.857 kb on + strandat 942.888 kb on - strandat 942.990 kb on - strandat 943.006 kb on + strandat 943.077 kb on + strandat 943.085 kb on - strandat 943.085 kb on - strandat 943.085 kb on - strandat 943.228 kb on + strand, within CSW01_04535at 943.228 kb on + strand, within CSW01_04535at 943.236 kb on - strand, within CSW01_04535at 943.387 kb on + strand, within CSW01_04535at 943.387 kb on + strand, within CSW01_04535at 943.395 kb on - strand, within CSW01_04535at 943.414 kb on - strand, within CSW01_04535at 943.445 kb on + strand, within CSW01_04535at 943.573 kb on + strand, within CSW01_04535at 943.616 kb on - strand, within CSW01_04535at 943.683 kb on + strandat 943.683 kb on + strandat 943.683 kb on + strandat 943.683 kb on + strandat 943.732 kb on - strand, within CSW01_04540at 943.809 kb on + strand, within CSW01_04540at 943.817 kb on - strand, within CSW01_04540at 943.849 kb on - strand, within CSW01_04540at 944.018 kb on + strandat 944.026 kb on - strandat 944.026 kb on - strandat 944.026 kb on - strandat 944.031 kb on + strandat 944.132 kb on + strand, within CSW01_04545at 944.140 kb on - strand, within CSW01_04545at 944.233 kb on - strand, within CSW01_04545at 944.310 kb on + strand, within CSW01_04545at 944.310 kb on + strand, within CSW01_04545at 944.318 kb on - strand, within CSW01_04545at 944.318 kb on - strand, within CSW01_04545at 944.318 kb on - strand, within CSW01_04545at 944.371 kb on - strand, within CSW01_04545at 944.414 kb on + strand, within CSW01_04545at 944.419 kb on + strand, within CSW01_04545at 944.421 kb on + strand, within CSW01_04545at 944.429 kb on - strand, within CSW01_04545at 944.431 kb on + strand, within CSW01_04545at 944.431 kb on + strand, within CSW01_04545at 944.439 kb on - strand, within CSW01_04545at 944.464 kb on + strand, within CSW01_04545at 944.464 kb on + strand, within CSW01_04545at 944.465 kb on - strand, within CSW01_04545at 944.482 kb on - strand, within CSW01_04545at 944.563 kb on - strand, within CSW01_04545at 944.611 kb on + strand, within CSW01_04545at 944.619 kb on - strand, within CSW01_04545at 944.726 kb on - strand, within CSW01_04545at 944.727 kb on - strand, within CSW01_04545at 944.773 kb on + strand, within CSW01_04545at 944.773 kb on + strand, within CSW01_04545at 944.807 kb on + strand, within CSW01_04545at 944.833 kb on + strand, within CSW01_04545at 944.843 kb on + strand, within CSW01_04545at 944.843 kb on + strand, within CSW01_04545at 944.851 kb on - strand, within CSW01_04545at 944.851 kb on - strand, within CSW01_04545at 944.893 kb on + strand, within CSW01_04545at 944.915 kb on - strand, within CSW01_04545

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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942,719 + +0.6
942,719 + -1.5
942,727 - -2.5
942,752 - -3.4
942,792 + +0.4
942,795 - +0.7
942,807 + -2.4
942,813 + -1.0
942,857 + +1.6
942,888 - +0.2
942,990 - -2.3
943,006 + +0.6
943,077 + -0.8
943,085 - -0.8
943,085 - +0.0
943,085 - +1.3
943,228 + CSW01_04535 0.20 -1.5
943,228 + CSW01_04535 0.20 -2.4
943,236 - CSW01_04535 0.21 +0.7
943,387 + CSW01_04535 0.45 -1.3
943,387 + CSW01_04535 0.45 -2.9
943,395 - CSW01_04535 0.46 -0.5
943,414 - CSW01_04535 0.49 -0.2
943,445 + CSW01_04535 0.54 +1.3
943,573 + CSW01_04535 0.75 -2.9
943,616 - CSW01_04535 0.82 -2.1
943,683 + -0.8
943,683 + -0.2
943,683 + +0.5
943,683 + -0.1
943,732 - CSW01_04540 0.15 +1.3
943,809 + CSW01_04540 0.41 -0.2
943,817 - CSW01_04540 0.43 +0.5
943,849 - CSW01_04540 0.54 +1.0
944,018 + -2.6
944,026 - -0.7
944,026 - +1.0
944,026 - -0.2
944,031 + +0.2
944,132 + CSW01_04545 0.13 -2.3
944,140 - CSW01_04545 0.14 +1.1
944,233 - CSW01_04545 0.23 +0.4
944,310 + CSW01_04545 0.31 -0.7
944,310 + CSW01_04545 0.31 +0.4
944,318 - CSW01_04545 0.31 -2.3
944,318 - CSW01_04545 0.31 +0.5
944,318 - CSW01_04545 0.31 +0.4
944,371 - CSW01_04545 0.37 +1.2
944,414 + CSW01_04545 0.41 -2.0
944,419 + CSW01_04545 0.41 +0.3
944,421 + CSW01_04545 0.41 +1.1
944,429 - CSW01_04545 0.42 +0.6
944,431 + CSW01_04545 0.42 +0.4
944,431 + CSW01_04545 0.42 +0.6
944,439 - CSW01_04545 0.43 +0.8
944,464 + CSW01_04545 0.45 -0.2
944,464 + CSW01_04545 0.45 +1.0
944,465 - CSW01_04545 0.46 -0.2
944,482 - CSW01_04545 0.47 -1.6
944,563 - CSW01_04545 0.55 +0.7
944,611 + CSW01_04545 0.60 -0.6
944,619 - CSW01_04545 0.60 -0.5
944,726 - CSW01_04545 0.71 -0.2
944,727 - CSW01_04545 0.71 +0.2
944,773 + CSW01_04545 0.75 -2.5
944,773 + CSW01_04545 0.75 -2.1
944,807 + CSW01_04545 0.79 -0.2
944,833 + CSW01_04545 0.81 +0.3
944,843 + CSW01_04545 0.82 +0.5
944,843 + CSW01_04545 0.82 +0.6
944,851 - CSW01_04545 0.83 -0.1
944,851 - CSW01_04545 0.83 +1.0
944,893 + CSW01_04545 0.87 +0.3
944,915 - CSW01_04545 0.89 +0.7

Or see this region's nucleotide sequence