Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04450

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04435 and CSW01_04440 overlap by 11 nucleotidesCSW01_04440 and CSW01_04445 are separated by 36 nucleotidesCSW01_04445 and CSW01_04450 overlap by 8 nucleotidesCSW01_04450 and CSW01_04455 are separated by 68 nucleotides CSW01_04435: CSW01_04435 - hypothetical protein, at 924,079 to 925,320 _04435 CSW01_04440: CSW01_04440 - type IV pilin, at 925,310 to 925,723 _04440 CSW01_04445: CSW01_04445 - hypothetical protein, at 925,760 to 926,128 _04445 CSW01_04450: CSW01_04450 - aminobenzoyl-glutamate transporter, at 926,121 to 927,680 _04450 CSW01_04455: CSW01_04455 - tRNA adenosine(34) deaminase TadA, at 927,749 to 928,330 _04455 Position (kb) 926 927 928Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 925.128 kb on + strand, within CSW01_04435at 925.128 kb on + strand, within CSW01_04435at 925.128 kb on + strand, within CSW01_04435at 925.175 kb on + strand, within CSW01_04435at 925.183 kb on - strand, within CSW01_04435at 925.183 kb on - strand, within CSW01_04435at 925.183 kb on - strand, within CSW01_04435at 925.185 kb on + strand, within CSW01_04435at 925.194 kb on - strand, within CSW01_04435at 925.194 kb on - strand, within CSW01_04435at 925.194 kb on - strand, within CSW01_04435at 925.194 kb on - strand, within CSW01_04435at 925.194 kb on - strand, within CSW01_04435at 925.194 kb on - strand, within CSW01_04435at 925.194 kb on - strand, within CSW01_04435at 925.196 kb on + strandat 925.196 kb on + strandat 925.196 kb on + strandat 925.201 kb on + strandat 925.204 kb on - strandat 925.204 kb on - strandat 925.204 kb on - strandat 925.209 kb on - strandat 925.209 kb on - strandat 925.209 kb on - strandat 925.209 kb on - strandat 925.209 kb on - strandat 925.304 kb on + strandat 925.336 kb on - strandat 925.336 kb on - strandat 925.356 kb on + strand, within CSW01_04440at 925.361 kb on + strand, within CSW01_04440at 925.364 kb on - strand, within CSW01_04440at 925.364 kb on - strand, within CSW01_04440at 925.366 kb on + strand, within CSW01_04440at 925.371 kb on + strand, within CSW01_04440at 925.374 kb on - strand, within CSW01_04440at 925.379 kb on - strand, within CSW01_04440at 925.379 kb on - strand, within CSW01_04440at 925.440 kb on + strand, within CSW01_04440at 925.440 kb on + strand, within CSW01_04440at 925.440 kb on + strand, within CSW01_04440at 925.440 kb on + strand, within CSW01_04440at 925.440 kb on + strand, within CSW01_04440at 925.448 kb on + strand, within CSW01_04440at 925.448 kb on - strand, within CSW01_04440at 925.456 kb on - strand, within CSW01_04440at 925.488 kb on - strand, within CSW01_04440at 925.506 kb on - strand, within CSW01_04440at 925.572 kb on - strand, within CSW01_04440at 925.585 kb on + strand, within CSW01_04440at 925.585 kb on + strand, within CSW01_04440at 925.585 kb on + strand, within CSW01_04440at 925.585 kb on + strand, within CSW01_04440at 925.585 kb on + strand, within CSW01_04440at 925.590 kb on + strand, within CSW01_04440at 925.593 kb on - strand, within CSW01_04440at 925.593 kb on - strand, within CSW01_04440at 925.598 kb on - strand, within CSW01_04440at 925.599 kb on - strand, within CSW01_04440at 925.622 kb on + strand, within CSW01_04440at 925.628 kb on + strand, within CSW01_04440at 925.673 kb on - strand, within CSW01_04440at 925.698 kb on + strandat 925.706 kb on - strandat 925.706 kb on - strandat 925.712 kb on + strandat 925.779 kb on + strandat 925.826 kb on + strand, within CSW01_04445at 925.844 kb on - strand, within CSW01_04445at 925.964 kb on + strand, within CSW01_04445at 926.080 kb on + strand, within CSW01_04445at 926.086 kb on + strand, within CSW01_04445at 926.094 kb on - strandat 926.276 kb on - strandat 926.434 kb on + strand, within CSW01_04450at 926.437 kb on - strand, within CSW01_04450at 926.442 kb on - strand, within CSW01_04450at 926.442 kb on - strand, within CSW01_04450at 926.442 kb on - strand, within CSW01_04450at 926.452 kb on + strand, within CSW01_04450at 926.452 kb on + strand, within CSW01_04450at 926.467 kb on + strand, within CSW01_04450at 926.475 kb on - strand, within CSW01_04450at 926.475 kb on - strand, within CSW01_04450at 926.486 kb on + strand, within CSW01_04450at 926.533 kb on - strand, within CSW01_04450at 926.549 kb on + strand, within CSW01_04450at 926.559 kb on - strand, within CSW01_04450at 926.616 kb on - strand, within CSW01_04450at 926.756 kb on + strand, within CSW01_04450at 926.774 kb on + strand, within CSW01_04450at 926.826 kb on - strand, within CSW01_04450at 926.905 kb on + strand, within CSW01_04450at 926.913 kb on - strand, within CSW01_04450at 927.008 kb on + strand, within CSW01_04450at 927.102 kb on + strand, within CSW01_04450at 927.102 kb on + strand, within CSW01_04450at 927.102 kb on + strand, within CSW01_04450at 927.110 kb on - strand, within CSW01_04450at 927.110 kb on - strand, within CSW01_04450at 927.110 kb on - strand, within CSW01_04450at 927.132 kb on - strand, within CSW01_04450at 927.136 kb on + strand, within CSW01_04450at 927.146 kb on + strand, within CSW01_04450at 927.258 kb on + strand, within CSW01_04450at 927.263 kb on + strand, within CSW01_04450at 927.276 kb on - strand, within CSW01_04450at 927.276 kb on - strand, within CSW01_04450at 927.324 kb on + strand, within CSW01_04450at 927.366 kb on - strand, within CSW01_04450at 927.427 kb on + strand, within CSW01_04450at 927.435 kb on - strand, within CSW01_04450at 927.437 kb on + strand, within CSW01_04450at 927.528 kb on + strandat 927.635 kb on + strandat 927.665 kb on + strandat 927.673 kb on - strandat 927.673 kb on - strandat 928.348 kb on + strandat 928.361 kb on - strandat 928.379 kb on - strandat 928.446 kb on - strandat 928.467 kb on + strandat 928.508 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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925,128 + CSW01_04435 0.84 -1.9
925,128 + CSW01_04435 0.84 -0.3
925,128 + CSW01_04435 0.84 +0.2
925,175 + CSW01_04435 0.88 +0.7
925,183 - CSW01_04435 0.89 -0.0
925,183 - CSW01_04435 0.89 -1.2
925,183 - CSW01_04435 0.89 +0.8
925,185 + CSW01_04435 0.89 -1.0
925,194 - CSW01_04435 0.90 +0.5
925,194 - CSW01_04435 0.90 -0.5
925,194 - CSW01_04435 0.90 -1.4
925,194 - CSW01_04435 0.90 +0.3
925,194 - CSW01_04435 0.90 -1.9
925,194 - CSW01_04435 0.90 +0.2
925,194 - CSW01_04435 0.90 -0.3
925,196 + -0.9
925,196 + +0.4
925,196 + -0.2
925,201 + +0.4
925,204 - -0.8
925,204 - +0.5
925,204 - -0.6
925,209 - +1.0
925,209 - -2.6
925,209 - +0.3
925,209 - +1.1
925,209 - +0.5
925,304 + +0.7
925,336 - -0.9
925,336 - -1.1
925,356 + CSW01_04440 0.11 +1.1
925,361 + CSW01_04440 0.12 +2.4
925,364 - CSW01_04440 0.13 -2.7
925,364 - CSW01_04440 0.13 +0.6
925,366 + CSW01_04440 0.14 +0.8
925,371 + CSW01_04440 0.15 +0.2
925,374 - CSW01_04440 0.15 -1.9
925,379 - CSW01_04440 0.17 +0.7
925,379 - CSW01_04440 0.17 +1.2
925,440 + CSW01_04440 0.31 -0.2
925,440 + CSW01_04440 0.31 -1.5
925,440 + CSW01_04440 0.31 +0.9
925,440 + CSW01_04440 0.31 +2.0
925,440 + CSW01_04440 0.31 -2.0
925,448 + CSW01_04440 0.33 -3.0
925,448 - CSW01_04440 0.33 +0.4
925,456 - CSW01_04440 0.35 +0.5
925,488 - CSW01_04440 0.43 +0.7
925,506 - CSW01_04440 0.47 +0.1
925,572 - CSW01_04440 0.63 -0.2
925,585 + CSW01_04440 0.66 +0.5
925,585 + CSW01_04440 0.66 -2.4
925,585 + CSW01_04440 0.66 +1.0
925,585 + CSW01_04440 0.66 -2.2
925,585 + CSW01_04440 0.66 -2.1
925,590 + CSW01_04440 0.68 +1.5
925,593 - CSW01_04440 0.68 -1.6
925,593 - CSW01_04440 0.68 +2.5
925,598 - CSW01_04440 0.70 -1.8
925,599 - CSW01_04440 0.70 +0.8
925,622 + CSW01_04440 0.75 -2.8
925,628 + CSW01_04440 0.77 +0.7
925,673 - CSW01_04440 0.88 +0.9
925,698 + +1.0
925,706 - -0.2
925,706 - -0.6
925,712 + +0.1
925,779 + +1.5
925,826 + CSW01_04445 0.18 -0.5
925,844 - CSW01_04445 0.23 -0.2
925,964 + CSW01_04445 0.55 -1.1
926,080 + CSW01_04445 0.87 -2.2
926,086 + CSW01_04445 0.88 -0.0
926,094 - -1.2
926,276 - -0.8
926,434 + CSW01_04450 0.20 +0.1
926,437 - CSW01_04450 0.20 +0.5
926,442 - CSW01_04450 0.21 +0.6
926,442 - CSW01_04450 0.21 +1.0
926,442 - CSW01_04450 0.21 +1.3
926,452 + CSW01_04450 0.21 +0.9
926,452 + CSW01_04450 0.21 -0.4
926,467 + CSW01_04450 0.22 +1.2
926,475 - CSW01_04450 0.23 +1.2
926,475 - CSW01_04450 0.23 +1.0
926,486 + CSW01_04450 0.23 -0.2
926,533 - CSW01_04450 0.26 +2.4
926,549 + CSW01_04450 0.27 +0.8
926,559 - CSW01_04450 0.28 -1.6
926,616 - CSW01_04450 0.32 -0.2
926,756 + CSW01_04450 0.41 -2.1
926,774 + CSW01_04450 0.42 -0.3
926,826 - CSW01_04450 0.45 +1.1
926,905 + CSW01_04450 0.50 -0.6
926,913 - CSW01_04450 0.51 -0.3
927,008 + CSW01_04450 0.57 +1.6
927,102 + CSW01_04450 0.63 +0.0
927,102 + CSW01_04450 0.63 +0.8
927,102 + CSW01_04450 0.63 -0.9
927,110 - CSW01_04450 0.63 +0.2
927,110 - CSW01_04450 0.63 -0.2
927,110 - CSW01_04450 0.63 -1.9
927,132 - CSW01_04450 0.65 -0.5
927,136 + CSW01_04450 0.65 -1.2
927,146 + CSW01_04450 0.66 +1.5
927,258 + CSW01_04450 0.73 -1.4
927,263 + CSW01_04450 0.73 +0.5
927,276 - CSW01_04450 0.74 +0.7
927,276 - CSW01_04450 0.74 -1.1
927,324 + CSW01_04450 0.77 +0.8
927,366 - CSW01_04450 0.80 +0.7
927,427 + CSW01_04450 0.84 +0.8
927,435 - CSW01_04450 0.84 +0.3
927,437 + CSW01_04450 0.84 +0.3
927,528 + -0.4
927,635 + +1.0
927,665 + -0.0
927,673 - -0.4
927,673 - -1.3
928,348 + -0.3
928,361 - -1.6
928,379 - +1.1
928,446 - -1.2
928,467 + -2.9
928,508 + +1.8

Or see this region's nucleotide sequence