Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04310

Experiment: ICP1_phage_235.3_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_235.3_MOI_rep1
896,413	-				-0.5
896,413	-				-3.8
896,555	+		CSW01_04305	0.17	-2.2
896,618	-		CSW01_04305	0.23	-0.4
896,627	+		CSW01_04305	0.24	+0.3
896,637	+		CSW01_04305	0.25	+1.5
896,683	+		CSW01_04305	0.30	+0.7
896,683	+		CSW01_04305	0.30	+0.2
896,683	+		CSW01_04305	0.30	+0.0
896,686	-		CSW01_04305	0.30	+0.4
896,694	+		CSW01_04305	0.31	+1.3
896,701	+		CSW01_04305	0.31	+0.7
896,708	+		CSW01_04305	0.32	+1.0
896,720	+		CSW01_04305	0.33	-1.3
896,720	+		CSW01_04305	0.33	-3.3
896,720	+		CSW01_04305	0.33	-0.8
896,726	+		CSW01_04305	0.34	-0.7
896,726	+		CSW01_04305	0.34	+0.6
896,728	-		CSW01_04305	0.34	-3.1
896,728	-		CSW01_04305	0.34	-1.6
896,728	-		CSW01_04305	0.34	-1.8
896,734	-		CSW01_04305	0.35	-2.3
896,734	-		CSW01_04305	0.35	+0.4
896,734	-		CSW01_04305	0.35	-0.4
896,734	-		CSW01_04305	0.35	-3.7
896,741	+		CSW01_04305	0.35	-1.2
896,786	+		CSW01_04305	0.40	+0.6
896,786	+		CSW01_04305	0.40	-0.8
896,793	-		CSW01_04305	0.40	-0.9
896,800	-		CSW01_04305	0.41	-0.7
896,803	+		CSW01_04305	0.41	-1.2
896,803	+		CSW01_04305	0.41	+0.0
896,803	+		CSW01_04305	0.41	-3.5
896,803	-		CSW01_04305	0.41	-0.1
896,806	-		CSW01_04305	0.42	+1.2
896,811	-		CSW01_04305	0.42	-2.2
896,811	-		CSW01_04305	0.42	+1.2
896,811	-		CSW01_04305	0.42	-1.0
896,817	+		CSW01_04305	0.43	-0.7
896,822	+		CSW01_04305	0.43	+0.3
896,822	+		CSW01_04305	0.43	+1.6
896,822	+		CSW01_04305	0.43	-0.8
896,822	+		CSW01_04305	0.43	-0.7
896,822	+		CSW01_04305	0.43	+0.1
896,822	+		CSW01_04305	0.43	-2.8
896,822	+		CSW01_04305	0.43	+0.1
896,822	+		CSW01_04305	0.43	+0.7
896,822	+		CSW01_04305	0.43	+1.7
896,822	+		CSW01_04305	0.43	-0.1
896,822	+		CSW01_04305	0.43	+1.2
896,822	+		CSW01_04305	0.43	-2.5
896,824	-		CSW01_04305	0.43	-0.0
896,828	+		CSW01_04305	0.44	-2.0
896,830	-		CSW01_04305	0.44	-0.1
896,830	-		CSW01_04305	0.44	-2.9
896,830	-		CSW01_04305	0.44	-2.8
896,836	+		CSW01_04305	0.45	-0.8
896,836	-		CSW01_04305	0.45	+1.1
896,836	-		CSW01_04305	0.45	-2.8
896,844	-		CSW01_04305	0.45	+0.3
896,844	-		CSW01_04305	0.45	-2.6
896,844	-		CSW01_04305	0.45	-0.0
896,844	-		CSW01_04305	0.45	-0.8
896,867	-		CSW01_04305	0.48	-0.7
896,946	+		CSW01_04305	0.55	-0.6
897,025	+		CSW01_04305	0.63	-1.3
897,044	+		CSW01_04305	0.65	+0.1
897,052	-		CSW01_04305	0.66	-0.3
897,064	+		CSW01_04305	0.67	-1.2
897,064	+		CSW01_04305	0.67	-0.8
897,064	+		CSW01_04305	0.67	+0.7
897,072	-		CSW01_04305	0.68	+0.4
897,072	-		CSW01_04305	0.68	-1.2
897,072	-		CSW01_04305	0.68	+0.8
897,072	-		CSW01_04305	0.68	+0.2
897,094	+		CSW01_04305	0.70	+1.8
897,104	+		CSW01_04305	0.71	-1.4
897,104	+		CSW01_04305	0.71	-1.8
897,106	-		CSW01_04305	0.71	-0.6
897,110	-		CSW01_04305	0.71	+1.4
897,112	-		CSW01_04305	0.72	-0.2
897,112	-		CSW01_04305	0.72	-0.1
897,127	+		CSW01_04305	0.73	-1.8
897,135	-		CSW01_04305	0.74	-3.0
897,140	-		CSW01_04305	0.74	-2.5
897,142	+		CSW01_04305	0.74	-0.1
897,142	+		CSW01_04305	0.74	-0.2
897,142	+		CSW01_04305	0.74	-0.8
897,142	+		CSW01_04305	0.74	-1.8
897,147	+		CSW01_04305	0.75	-1.9
897,149	+		CSW01_04305	0.75	-0.8
897,150	-		CSW01_04305	0.75	-2.8
897,150	-		CSW01_04305	0.75	-1.3
897,150	-		CSW01_04305	0.75	+0.3
897,150	-		CSW01_04305	0.75	+0.3
897,151	-		CSW01_04305	0.75	+0.5
897,157	-		CSW01_04305	0.76	-1.2
897,158	-		CSW01_04305	0.76	-2.3
897,212	+		CSW01_04305	0.81	+0.6
897,329	+				-3.2
897,329	+				-0.1
897,329	+				-0.8
897,366	+				+0.9
897,402	-				-0.3
897,414	-				-0.1
897,472	-				+0.5
897,495	+				+0.8
897,501	+				-0.8
897,501	+				+1.2
897,502	+				+0.1
897,509	-				+0.8
897,509	-				-0.6
897,513	+				-1.3
897,521	-		CSW01_04310	0.11	-2.8
897,531	-		CSW01_04310	0.12	+1.9
897,537	-		CSW01_04310	0.12	-1.2
897,538	-		CSW01_04310	0.12	-1.5
897,556	-		CSW01_04310	0.14	-1.0
897,557	-		CSW01_04310	0.14	-2.1
897,557	-		CSW01_04310	0.14	-1.0
897,557	-		CSW01_04310	0.14	+0.9
897,557	-		CSW01_04310	0.14	-0.5
897,557	-		CSW01_04310	0.14	+0.2
897,558	+		CSW01_04310	0.14	-2.0
897,558	+		CSW01_04310	0.14	-0.7
897,558	+		CSW01_04310	0.14	-2.0
897,558	+		CSW01_04310	0.14	+0.5
897,566	-		CSW01_04310	0.15	+0.6
897,566	-		CSW01_04310	0.15	-0.7
897,566	-		CSW01_04310	0.15	-0.7
897,566	-		CSW01_04310	0.15	-1.5
897,566	-		CSW01_04310	0.15	-0.3
897,566	-		CSW01_04310	0.15	+1.7
897,566	-		CSW01_04310	0.15	+0.9
897,588	+		CSW01_04310	0.17	+0.4
897,596	-		CSW01_04310	0.18	-0.7
897,596	-		CSW01_04310	0.18	+0.7
897,601	+		CSW01_04310	0.19	-0.9
897,601	+		CSW01_04310	0.19	+0.5
897,609	-		CSW01_04310	0.19	-1.6
897,611	+		CSW01_04310	0.20	-0.8
897,632	+		CSW01_04310	0.22	-0.6
897,632	+		CSW01_04310	0.22	+0.9
897,640	-		CSW01_04310	0.22	+0.4
897,653	+		CSW01_04310	0.24	-1.2
897,670	+		CSW01_04310	0.25	+1.0
897,678	-		CSW01_04310	0.26	-0.1
897,680	-		CSW01_04310	0.26	+1.3
897,682	+		CSW01_04310	0.27	-0.3
897,687	+		CSW01_04310	0.27	+1.1
897,717	+		CSW01_04310	0.30	+1.4
897,717	+		CSW01_04310	0.30	+1.4
897,717	+		CSW01_04310	0.30	+0.1
897,725	-		CSW01_04310	0.31	-0.3
897,725	-		CSW01_04310	0.31	-0.3
897,725	-		CSW01_04310	0.31	-0.4
897,725	-		CSW01_04310	0.31	-1.5
897,725	-		CSW01_04310	0.31	-0.9
897,725	-		CSW01_04310	0.31	+0.4
897,725	-		CSW01_04310	0.31	+0.7
897,725	-		CSW01_04310	0.31	+0.2
897,772	+		CSW01_04310	0.35	+1.0
897,796	+		CSW01_04310	0.38	-0.9
897,807	+		CSW01_04310	0.39	-0.5
897,833	-		CSW01_04310	0.41	-2.9
897,860	-		CSW01_04310	0.44	-0.2
897,873	+		CSW01_04310	0.45	-0.2
897,873	+		CSW01_04310	0.45	+1.1
897,873	+		CSW01_04310	0.45	+0.6
897,873	+		CSW01_04310	0.45	-0.8
897,873	+		CSW01_04310	0.45	+0.1
897,881	-		CSW01_04310	0.46	-1.6
897,881	-		CSW01_04310	0.46	+0.8
897,881	-		CSW01_04310	0.46	+0.6
897,881	-		CSW01_04310	0.46	-2.8
897,912	+		CSW01_04310	0.49	+1.7
897,936	-		CSW01_04310	0.52	-1.4
897,945	-		CSW01_04310	0.52	-0.8
897,945	-		CSW01_04310	0.52	-1.5
897,950	-		CSW01_04310	0.53	+0.4
897,989	-		CSW01_04310	0.57	+0.9
897,996	-		CSW01_04310	0.57	+1.9
898,070	+		CSW01_04310	0.65	-0.9
898,099	+		CSW01_04310	0.68	+0.3
898,099	+		CSW01_04310	0.68	+0.2
898,107	-		CSW01_04310	0.68	-3.2
898,107	-		CSW01_04310	0.68	+0.8
898,120	+		CSW01_04310	0.70	+0.3
898,125	+		CSW01_04310	0.70	+1.5
898,135	+		CSW01_04310	0.71	+1.1
898,139	+		CSW01_04310	0.71	-0.7
898,143	-		CSW01_04310	0.72	-3.2
898,143	-		CSW01_04310	0.72	+2.0
898,143	-		CSW01_04310	0.72	+0.2
898,146	+		CSW01_04310	0.72	-3.3
898,146	+		CSW01_04310	0.72	-2.0
898,154	-		CSW01_04310	0.73	-2.3
898,160	+		CSW01_04310	0.74	+1.2
898,161	+		CSW01_04310	0.74	-0.7
898,161	+		CSW01_04310	0.74	+0.4
898,161	+		CSW01_04310	0.74	+0.4
898,168	-		CSW01_04310	0.74	-0.3
898,169	-		CSW01_04310	0.74	-0.5
898,169	-		CSW01_04310	0.74	+1.7
898,169	-		CSW01_04310	0.74	-1.9
898,196	-		CSW01_04310	0.77	+0.2
898,206	+		CSW01_04310	0.78	-0.4
898,206	+		CSW01_04310	0.78	-2.5
898,211	+		CSW01_04310	0.79	-0.3
898,235	+		CSW01_04310	0.81	-0.7
898,238	-		CSW01_04310	0.81	+1.6
898,238	-		CSW01_04310	0.81	-0.8
898,249	+		CSW01_04310	0.82	-0.5
898,253	-		CSW01_04310	0.83	-1.1
898,253	-		CSW01_04310	0.83	-0.8
898,253	-		CSW01_04310	0.83	+1.3
898,257	-		CSW01_04310	0.83	-0.7
898,272	+		CSW01_04310	0.85	-0.2
898,280	-		CSW01_04310	0.85	-1.6
898,280	-		CSW01_04310	0.85	-2.5
898,306	+		CSW01_04310	0.88	-0.3
898,307	-		CSW01_04310	0.88	+0.4
898,307	-		CSW01_04310	0.88	-0.2
898,314	-		CSW01_04310	0.89	-2.6
898,314	-		CSW01_04310	0.89	+0.1
898,314	-		CSW01_04310	0.89	-0.0
898,314	-		CSW01_04310	0.89	-2.2
898,314	-		CSW01_04310	0.89	-0.5
898,314	-		CSW01_04310	0.89	-1.2
898,314	-		CSW01_04310	0.89	+0.0
898,375	+				-1.4
898,385	+				+1.1
898,385	+				-3.4
898,393	+				+0.1
898,401	-				-3.1
898,403	-				-3.5
898,445	+				+1.2
898,533	+				+0.3
898,553	-				-1.3
898,561	-				-1.4
898,581	+				-2.0
898,598	-				-0.6
898,618	+				+0.3
898,901	+		CSW01_04315	0.32	-1.1
898,909	-		CSW01_04315	0.33	-0.7
899,005	+		CSW01_04315	0.45	-1.4
899,200	-		CSW01_04315	0.68	-2.4
899,202	+		CSW01_04315	0.68	+0.4
899,212	-		CSW01_04315	0.69	+0.1
899,247	+		CSW01_04315	0.74	+1.1
899,360	+		CSW01_04315	0.87	-3.0
899,364	+		CSW01_04315	0.88	-0.3
899,372	-		CSW01_04315	0.89	+0.2
899,372	-		CSW01_04315	0.89	-1.7
899,372	-		CSW01_04315	0.89	-3.4
899,372	-		CSW01_04315	0.89	-2.9