Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04070

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04065 and CSW01_04070 are separated by 100 nucleotidesCSW01_04070 and CSW01_04075 are separated by 124 nucleotidesCSW01_04075 and CSW01_04080 are separated by 165 nucleotidesCSW01_04080 and CSW01_04085 are separated by 33 nucleotides CSW01_04065: CSW01_04065 - D-amino acid dehydrogenase small subunit, at 841,103 to 842,368 _04065 CSW01_04070: CSW01_04070 - LysR family transcriptional regulator, at 842,469 to 843,401 _04070 CSW01_04075: CSW01_04075 - 4,5-dioxygenase, at 843,526 to 843,855 _04075 CSW01_04080: CSW01_04080 - hypothetical protein, at 844,021 to 844,293 _04080 CSW01_04085: CSW01_04085 - response regulator, at 844,327 to 845,010 _04085 Position (kb) 842 843 844Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 841.470 kb on - strand, within CSW01_04065at 841.536 kb on - strand, within CSW01_04065at 841.536 kb on - strand, within CSW01_04065at 841.551 kb on + strand, within CSW01_04065at 841.640 kb on + strand, within CSW01_04065at 841.648 kb on - strand, within CSW01_04065at 841.648 kb on - strand, within CSW01_04065at 841.703 kb on - strand, within CSW01_04065at 841.792 kb on + strand, within CSW01_04065at 841.792 kb on + strand, within CSW01_04065at 841.792 kb on + strand, within CSW01_04065at 841.800 kb on - strand, within CSW01_04065at 841.800 kb on - strand, within CSW01_04065at 841.819 kb on + strand, within CSW01_04065at 841.827 kb on - strand, within CSW01_04065at 841.845 kb on + strand, within CSW01_04065at 841.845 kb on + strand, within CSW01_04065at 841.845 kb on + strand, within CSW01_04065at 841.853 kb on - strand, within CSW01_04065at 842.013 kb on - strand, within CSW01_04065at 842.013 kb on - strand, within CSW01_04065at 842.108 kb on + strand, within CSW01_04065at 842.111 kb on - strand, within CSW01_04065at 842.199 kb on + strand, within CSW01_04065at 842.199 kb on + strand, within CSW01_04065at 842.199 kb on + strand, within CSW01_04065at 842.207 kb on - strand, within CSW01_04065at 842.207 kb on - strand, within CSW01_04065at 842.207 kb on - strand, within CSW01_04065at 842.207 kb on - strand, within CSW01_04065at 842.218 kb on - strand, within CSW01_04065at 842.225 kb on + strand, within CSW01_04065at 842.225 kb on + strand, within CSW01_04065at 842.225 kb on + strand, within CSW01_04065at 842.298 kb on - strandat 842.343 kb on - strandat 842.517 kb on + strandat 842.517 kb on + strandat 842.641 kb on + strand, within CSW01_04070at 842.661 kb on + strand, within CSW01_04070at 842.700 kb on - strand, within CSW01_04070at 842.715 kb on + strand, within CSW01_04070at 842.730 kb on - strand, within CSW01_04070at 842.730 kb on - strand, within CSW01_04070at 842.739 kb on - strand, within CSW01_04070at 842.846 kb on - strand, within CSW01_04070at 842.864 kb on + strand, within CSW01_04070at 842.872 kb on - strand, within CSW01_04070at 842.923 kb on - strand, within CSW01_04070at 842.989 kb on - strand, within CSW01_04070at 842.991 kb on + strand, within CSW01_04070at 843.019 kb on - strand, within CSW01_04070at 843.030 kb on + strand, within CSW01_04070at 843.058 kb on + strand, within CSW01_04070at 843.058 kb on + strand, within CSW01_04070at 843.058 kb on + strand, within CSW01_04070at 843.066 kb on - strand, within CSW01_04070at 843.101 kb on + strand, within CSW01_04070at 843.101 kb on + strand, within CSW01_04070at 843.106 kb on - strand, within CSW01_04070at 843.109 kb on - strand, within CSW01_04070at 843.109 kb on - strand, within CSW01_04070at 843.120 kb on + strand, within CSW01_04070at 843.152 kb on - strand, within CSW01_04070at 843.165 kb on + strand, within CSW01_04070at 843.178 kb on + strand, within CSW01_04070at 843.236 kb on + strand, within CSW01_04070at 843.381 kb on - strandat 843.471 kb on + strandat 843.471 kb on + strandat 843.476 kb on + strandat 843.476 kb on + strandat 843.479 kb on - strandat 843.489 kb on - strandat 843.489 kb on - strandat 843.489 kb on - strandat 843.494 kb on - strandat 843.510 kb on + strandat 843.518 kb on - strandat 843.518 kb on - strandat 843.518 kb on - strandat 843.629 kb on + strand, within CSW01_04075at 843.642 kb on - strand, within CSW01_04075at 843.644 kb on + strand, within CSW01_04075at 843.644 kb on + strand, within CSW01_04075at 843.652 kb on - strand, within CSW01_04075at 843.652 kb on - strand, within CSW01_04075at 843.665 kb on - strand, within CSW01_04075at 843.709 kb on - strand, within CSW01_04075at 843.713 kb on + strand, within CSW01_04075at 843.721 kb on - strand, within CSW01_04075at 843.742 kb on + strand, within CSW01_04075at 843.742 kb on + strand, within CSW01_04075at 843.750 kb on - strand, within CSW01_04075at 843.773 kb on + strand, within CSW01_04075at 843.811 kb on - strand, within CSW01_04075at 843.845 kb on + strandat 843.850 kb on + strandat 843.854 kb on + strandat 843.858 kb on - strandat 843.955 kb on + strandat 843.972 kb on + strandat 844.005 kb on + strandat 844.065 kb on - strand, within CSW01_04080at 844.126 kb on + strand, within CSW01_04080at 844.136 kb on + strand, within CSW01_04080at 844.136 kb on + strand, within CSW01_04080at 844.136 kb on - strand, within CSW01_04080at 844.144 kb on - strand, within CSW01_04080at 844.144 kb on - strand, within CSW01_04080at 844.247 kb on + strand, within CSW01_04080at 844.259 kb on + strand, within CSW01_04080at 844.333 kb on - strandat 844.347 kb on + strandat 844.374 kb on + strandat 844.382 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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841,470 - CSW01_04065 0.29 +3.0
841,536 - CSW01_04065 0.34 +0.7
841,536 - CSW01_04065 0.34 -2.6
841,551 + CSW01_04065 0.35 +1.0
841,640 + CSW01_04065 0.42 -0.8
841,648 - CSW01_04065 0.43 -0.0
841,648 - CSW01_04065 0.43 -0.0
841,703 - CSW01_04065 0.47 -1.5
841,792 + CSW01_04065 0.54 +1.3
841,792 + CSW01_04065 0.54 +2.0
841,792 + CSW01_04065 0.54 +1.7
841,800 - CSW01_04065 0.55 -1.3
841,800 - CSW01_04065 0.55 +1.2
841,819 + CSW01_04065 0.57 -0.7
841,827 - CSW01_04065 0.57 -0.2
841,845 + CSW01_04065 0.59 +0.1
841,845 + CSW01_04065 0.59 +0.2
841,845 + CSW01_04065 0.59 +0.1
841,853 - CSW01_04065 0.59 -2.5
842,013 - CSW01_04065 0.72 +0.2
842,013 - CSW01_04065 0.72 +0.8
842,108 + CSW01_04065 0.79 +0.2
842,111 - CSW01_04065 0.80 +0.3
842,199 + CSW01_04065 0.87 -3.1
842,199 + CSW01_04065 0.87 -0.4
842,199 + CSW01_04065 0.87 +0.0
842,207 - CSW01_04065 0.87 -0.3
842,207 - CSW01_04065 0.87 -0.2
842,207 - CSW01_04065 0.87 -1.8
842,207 - CSW01_04065 0.87 +0.5
842,218 - CSW01_04065 0.88 +1.0
842,225 + CSW01_04065 0.89 -0.4
842,225 + CSW01_04065 0.89 -0.1
842,225 + CSW01_04065 0.89 -0.2
842,298 - +1.5
842,343 - +0.7
842,517 + +0.4
842,517 + -2.0
842,641 + CSW01_04070 0.18 -2.8
842,661 + CSW01_04070 0.21 -0.7
842,700 - CSW01_04070 0.25 -2.0
842,715 + CSW01_04070 0.26 +0.6
842,730 - CSW01_04070 0.28 +0.8
842,730 - CSW01_04070 0.28 -1.2
842,739 - CSW01_04070 0.29 -0.1
842,846 - CSW01_04070 0.40 -1.7
842,864 + CSW01_04070 0.42 +0.5
842,872 - CSW01_04070 0.43 -0.9
842,923 - CSW01_04070 0.49 -3.1
842,989 - CSW01_04070 0.56 -1.8
842,991 + CSW01_04070 0.56 -2.2
843,019 - CSW01_04070 0.59 +0.3
843,030 + CSW01_04070 0.60 +0.9
843,058 + CSW01_04070 0.63 +0.7
843,058 + CSW01_04070 0.63 -0.9
843,058 + CSW01_04070 0.63 -2.5
843,066 - CSW01_04070 0.64 +0.1
843,101 + CSW01_04070 0.68 +0.6
843,101 + CSW01_04070 0.68 +1.3
843,106 - CSW01_04070 0.68 -3.7
843,109 - CSW01_04070 0.69 -2.0
843,109 - CSW01_04070 0.69 +0.6
843,120 + CSW01_04070 0.70 -0.5
843,152 - CSW01_04070 0.73 +0.3
843,165 + CSW01_04070 0.75 -2.9
843,178 + CSW01_04070 0.76 -1.1
843,236 + CSW01_04070 0.82 +0.2
843,381 - +1.5
843,471 + -1.1
843,471 + -1.1
843,476 + -2.4
843,476 + -0.5
843,479 - +1.1
843,489 - -0.3
843,489 - +0.6
843,489 - -0.1
843,494 - +0.4
843,510 + -1.9
843,518 - -0.8
843,518 - +0.5
843,518 - +1.4
843,629 + CSW01_04075 0.31 -1.1
843,642 - CSW01_04075 0.35 +0.6
843,644 + CSW01_04075 0.36 -0.2
843,644 + CSW01_04075 0.36 -2.6
843,652 - CSW01_04075 0.38 -1.1
843,652 - CSW01_04075 0.38 +3.3
843,665 - CSW01_04075 0.42 -1.0
843,709 - CSW01_04075 0.55 -1.0
843,713 + CSW01_04075 0.57 +0.2
843,721 - CSW01_04075 0.59 +0.8
843,742 + CSW01_04075 0.65 +0.0
843,742 + CSW01_04075 0.65 +1.1
843,750 - CSW01_04075 0.68 +0.1
843,773 + CSW01_04075 0.75 +1.4
843,811 - CSW01_04075 0.86 -2.2
843,845 + +0.3
843,850 + -0.1
843,854 + -3.2
843,858 - -0.0
843,955 + +1.0
843,972 + +1.7
844,005 + +1.2
844,065 - CSW01_04080 0.16 -1.3
844,126 + CSW01_04080 0.38 -0.8
844,136 + CSW01_04080 0.42 +0.4
844,136 + CSW01_04080 0.42 +0.0
844,136 - CSW01_04080 0.42 +0.5
844,144 - CSW01_04080 0.45 +1.2
844,144 - CSW01_04080 0.45 -0.3
844,247 + CSW01_04080 0.83 -1.6
844,259 + CSW01_04080 0.87 +0.8
844,333 - -2.4
844,347 + -0.1
844,374 + +0.4
844,382 - +1.9

Or see this region's nucleotide sequence