Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03830

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03825 and CSW01_03830 are separated by 129 nucleotidesCSW01_03830 and CSW01_03835 are separated by 152 nucleotidesCSW01_03835 and CSW01_03840 are separated by 229 nucleotides CSW01_03825: CSW01_03825 - malate synthase A, at 787,695 to 789,365 _03825 CSW01_03830: CSW01_03830 - isocitrate lyase, at 789,495 to 790,808 _03830 CSW01_03835: CSW01_03835 - acetoin utilization protein AcuB, at 790,961 to 791,470 _03835 CSW01_03840: CSW01_03840 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 791,700 to 792,758 _03840 Position (kb) 789 790 791Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 788.554 kb on - strand, within CSW01_03825at 788.564 kb on + strand, within CSW01_03825at 788.582 kb on - strand, within CSW01_03825at 788.587 kb on - strand, within CSW01_03825at 788.620 kb on - strand, within CSW01_03825at 788.664 kb on - strand, within CSW01_03825at 788.672 kb on + strand, within CSW01_03825at 788.672 kb on + strand, within CSW01_03825at 788.680 kb on - strand, within CSW01_03825at 788.680 kb on - strand, within CSW01_03825at 788.691 kb on + strand, within CSW01_03825at 788.742 kb on - strand, within CSW01_03825at 788.744 kb on + strand, within CSW01_03825at 788.752 kb on - strand, within CSW01_03825at 788.872 kb on + strand, within CSW01_03825at 788.875 kb on - strand, within CSW01_03825at 788.905 kb on - strand, within CSW01_03825at 788.918 kb on + strand, within CSW01_03825at 788.978 kb on + strand, within CSW01_03825at 789.006 kb on + strand, within CSW01_03825at 789.073 kb on + strand, within CSW01_03825at 789.187 kb on + strand, within CSW01_03825at 789.189 kb on + strand, within CSW01_03825at 789.228 kb on - strandat 789.313 kb on + strandat 789.321 kb on + strandat 789.321 kb on - strandat 789.329 kb on - strandat 789.367 kb on - strandat 789.412 kb on - strandat 789.429 kb on + strandat 789.429 kb on + strandat 789.429 kb on + strandat 789.429 kb on + strandat 789.437 kb on - strandat 789.442 kb on - strandat 789.442 kb on - strandat 789.475 kb on + strandat 789.499 kb on - strandat 789.583 kb on - strandat 789.618 kb on - strandat 789.623 kb on + strandat 789.623 kb on + strandat 789.646 kb on + strand, within CSW01_03830at 789.649 kb on - strand, within CSW01_03830at 789.770 kb on - strand, within CSW01_03830at 789.792 kb on + strand, within CSW01_03830at 789.800 kb on - strand, within CSW01_03830at 789.807 kb on + strand, within CSW01_03830at 789.807 kb on + strand, within CSW01_03830at 789.820 kb on - strand, within CSW01_03830at 789.835 kb on + strand, within CSW01_03830at 789.852 kb on - strand, within CSW01_03830at 789.858 kb on + strand, within CSW01_03830at 789.866 kb on - strand, within CSW01_03830at 789.938 kb on - strand, within CSW01_03830at 789.940 kb on + strand, within CSW01_03830at 789.950 kb on - strand, within CSW01_03830at 789.995 kb on + strand, within CSW01_03830at 790.047 kb on - strand, within CSW01_03830at 790.059 kb on + strand, within CSW01_03830at 790.060 kb on - strand, within CSW01_03830at 790.113 kb on - strand, within CSW01_03830at 790.281 kb on + strand, within CSW01_03830at 790.289 kb on - strand, within CSW01_03830at 790.289 kb on - strand, within CSW01_03830at 790.289 kb on - strand, within CSW01_03830at 790.302 kb on + strand, within CSW01_03830at 790.348 kb on - strand, within CSW01_03830at 790.350 kb on + strand, within CSW01_03830at 790.350 kb on + strand, within CSW01_03830at 790.350 kb on + strand, within CSW01_03830at 790.350 kb on + strand, within CSW01_03830at 790.358 kb on - strand, within CSW01_03830at 790.358 kb on - strand, within CSW01_03830at 790.358 kb on - strand, within CSW01_03830at 790.358 kb on - strand, within CSW01_03830at 790.358 kb on - strand, within CSW01_03830at 790.369 kb on - strand, within CSW01_03830at 790.426 kb on + strand, within CSW01_03830at 790.439 kb on - strand, within CSW01_03830at 790.443 kb on + strand, within CSW01_03830at 790.443 kb on + strand, within CSW01_03830at 790.451 kb on - strand, within CSW01_03830at 790.451 kb on - strand, within CSW01_03830at 790.451 kb on - strand, within CSW01_03830at 790.544 kb on + strand, within CSW01_03830at 790.594 kb on - strand, within CSW01_03830at 790.601 kb on + strand, within CSW01_03830at 790.601 kb on + strand, within CSW01_03830at 790.613 kb on + strand, within CSW01_03830at 790.647 kb on - strand, within CSW01_03830at 790.677 kb on + strandat 790.677 kb on + strandat 790.677 kb on + strandat 790.685 kb on - strandat 790.685 kb on - strandat 790.685 kb on - strandat 790.685 kb on - strandat 790.685 kb on - strandat 790.715 kb on + strandat 790.733 kb on + strandat 790.741 kb on - strandat 790.743 kb on + strandat 790.778 kb on - strandat 790.817 kb on + strandat 790.878 kb on - strandat 790.884 kb on + strandat 790.892 kb on - strandat 790.975 kb on - strandat 791.158 kb on + strand, within CSW01_03835at 791.163 kb on + strand, within CSW01_03835at 791.172 kb on + strand, within CSW01_03835at 791.180 kb on - strand, within CSW01_03835at 791.182 kb on + strand, within CSW01_03835at 791.215 kb on - strand, within CSW01_03835at 791.215 kb on - strand, within CSW01_03835at 791.222 kb on - strand, within CSW01_03835at 791.292 kb on + strand, within CSW01_03835at 791.326 kb on + strand, within CSW01_03835at 791.370 kb on - strand, within CSW01_03835at 791.400 kb on + strand, within CSW01_03835at 791.408 kb on - strand, within CSW01_03835at 791.411 kb on + strand, within CSW01_03835at 791.424 kb on - strandat 791.424 kb on - strandat 791.496 kb on - strandat 791.543 kb on + strandat 791.561 kb on + strandat 791.569 kb on - strandat 791.597 kb on + strandat 791.597 kb on - strandat 791.605 kb on - strandat 791.612 kb on + strandat 791.632 kb on + strandat 791.638 kb on + strandat 791.638 kb on + strandat 791.640 kb on - strandat 791.646 kb on - strandat 791.646 kb on - strandat 791.690 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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788,554 - CSW01_03825 0.51 +0.1
788,564 + CSW01_03825 0.52 +0.4
788,582 - CSW01_03825 0.53 +0.6
788,587 - CSW01_03825 0.53 +0.7
788,620 - CSW01_03825 0.55 +0.1
788,664 - CSW01_03825 0.58 -0.4
788,672 + CSW01_03825 0.58 -2.3
788,672 + CSW01_03825 0.58 -0.7
788,680 - CSW01_03825 0.59 +0.4
788,680 - CSW01_03825 0.59 -2.4
788,691 + CSW01_03825 0.60 +0.1
788,742 - CSW01_03825 0.63 -1.7
788,744 + CSW01_03825 0.63 -0.7
788,752 - CSW01_03825 0.63 +0.8
788,872 + CSW01_03825 0.70 +1.7
788,875 - CSW01_03825 0.71 -0.2
788,905 - CSW01_03825 0.72 +0.9
788,918 + CSW01_03825 0.73 -0.3
788,978 + CSW01_03825 0.77 -0.7
789,006 + CSW01_03825 0.78 +0.9
789,073 + CSW01_03825 0.82 +0.7
789,187 + CSW01_03825 0.89 +0.5
789,189 + CSW01_03825 0.89 +0.3
789,228 - -0.5
789,313 + -0.2
789,321 + -0.9
789,321 - -1.6
789,329 - +0.7
789,367 - -3.2
789,412 - +0.7
789,429 + -2.3
789,429 + -0.9
789,429 + -2.1
789,429 + +1.7
789,437 - -1.2
789,442 - -1.6
789,442 - +1.8
789,475 + -0.7
789,499 - -2.9
789,583 - +1.0
789,618 - +1.7
789,623 + +1.6
789,623 + +1.6
789,646 + CSW01_03830 0.11 +0.3
789,649 - CSW01_03830 0.12 +2.3
789,770 - CSW01_03830 0.21 -2.5
789,792 + CSW01_03830 0.23 +0.6
789,800 - CSW01_03830 0.23 -0.8
789,807 + CSW01_03830 0.24 -0.4
789,807 + CSW01_03830 0.24 -2.1
789,820 - CSW01_03830 0.25 -0.1
789,835 + CSW01_03830 0.26 +0.2
789,852 - CSW01_03830 0.27 -2.4
789,858 + CSW01_03830 0.28 -0.3
789,866 - CSW01_03830 0.28 -0.9
789,938 - CSW01_03830 0.34 -3.8
789,940 + CSW01_03830 0.34 -2.4
789,950 - CSW01_03830 0.35 -1.0
789,995 + CSW01_03830 0.38 -0.4
790,047 - CSW01_03830 0.42 -1.7
790,059 + CSW01_03830 0.43 +0.5
790,060 - CSW01_03830 0.43 -2.6
790,113 - CSW01_03830 0.47 +0.3
790,281 + CSW01_03830 0.60 +0.3
790,289 - CSW01_03830 0.60 +0.1
790,289 - CSW01_03830 0.60 -2.0
790,289 - CSW01_03830 0.60 +1.0
790,302 + CSW01_03830 0.61 +0.8
790,348 - CSW01_03830 0.65 -0.6
790,350 + CSW01_03830 0.65 +0.9
790,350 + CSW01_03830 0.65 -2.8
790,350 + CSW01_03830 0.65 -0.3
790,350 + CSW01_03830 0.65 +0.4
790,358 - CSW01_03830 0.66 -4.1
790,358 - CSW01_03830 0.66 -1.5
790,358 - CSW01_03830 0.66 +1.6
790,358 - CSW01_03830 0.66 -0.8
790,358 - CSW01_03830 0.66 -2.4
790,369 - CSW01_03830 0.67 -2.1
790,426 + CSW01_03830 0.71 +1.0
790,439 - CSW01_03830 0.72 -0.4
790,443 + CSW01_03830 0.72 +0.5
790,443 + CSW01_03830 0.72 +0.4
790,451 - CSW01_03830 0.73 +0.4
790,451 - CSW01_03830 0.73 +0.1
790,451 - CSW01_03830 0.73 -1.4
790,544 + CSW01_03830 0.80 -0.2
790,594 - CSW01_03830 0.84 +1.3
790,601 + CSW01_03830 0.84 -0.5
790,601 + CSW01_03830 0.84 -2.4
790,613 + CSW01_03830 0.85 -2.1
790,647 - CSW01_03830 0.88 -1.0
790,677 + +0.3
790,677 + +2.5
790,677 + -1.2
790,685 - -3.7
790,685 - -0.4
790,685 - -0.6
790,685 - +0.4
790,685 - +1.0
790,715 + -0.4
790,733 + -1.7
790,741 - +1.2
790,743 + -1.1
790,778 - -2.8
790,817 + -0.0
790,878 - -3.8
790,884 + +0.6
790,892 - +1.0
790,975 - -0.1
791,158 + CSW01_03835 0.39 +0.3
791,163 + CSW01_03835 0.40 +1.2
791,172 + CSW01_03835 0.41 -0.9
791,180 - CSW01_03835 0.43 -1.2
791,182 + CSW01_03835 0.43 -0.2
791,215 - CSW01_03835 0.50 +1.6
791,215 - CSW01_03835 0.50 -0.7
791,222 - CSW01_03835 0.51 -2.3
791,292 + CSW01_03835 0.65 +0.8
791,326 + CSW01_03835 0.72 -2.6
791,370 - CSW01_03835 0.80 +0.8
791,400 + CSW01_03835 0.86 -0.5
791,408 - CSW01_03835 0.88 +1.7
791,411 + CSW01_03835 0.88 -1.4
791,424 - +0.1
791,424 - +0.5
791,496 - +0.5
791,543 + +0.2
791,561 + -1.1
791,569 - -0.6
791,597 + -3.9
791,597 - +0.0
791,605 - +0.8
791,612 + +0.1
791,632 + +1.3
791,638 + +1.1
791,638 + +1.7
791,640 - -1.0
791,646 - -0.4
791,646 - -1.7
791,690 + +0.2

Or see this region's nucleotide sequence