Experiment: ICP1_phage_235.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03790 and CSW01_03795 are separated by 2 nucleotides CSW01_03795 and CSW01_03800 are separated by 33 nucleotides CSW01_03800 and CSW01_03805 are separated by 60 nucleotides
CSW01_03790: CSW01_03790 - phosphate ABC transporter, permease protein PstA, at 780,059 to 781,705
_03790
CSW01_03795: CSW01_03795 - phosphate ABC transporter ATP-binding protein, at 781,708 to 782,529
_03795
CSW01_03800: CSW01_03800 - phosphate transport system regulator PhoU, at 782,563 to 783,273
_03800
CSW01_03805: CSW01_03805 - polyphosphate kinase 2, at 783,334 to 784,110
_03805
Position (kb) 782
783
784 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 781.725 kb on - strand at 781.726 kb on + strand at 781.736 kb on + strand at 781.744 kb on - strand at 781.869 kb on - strand, within CSW01_03795 at 781.919 kb on + strand, within CSW01_03795 at 782.327 kb on + strand, within CSW01_03795 at 782.330 kb on + strand, within CSW01_03795 at 782.554 kb on + strand at 783.207 kb on + strand at 783.207 kb on + strand at 783.207 kb on + strand at 783.217 kb on - strand at 783.348 kb on + strand at 783.355 kb on + strand at 783.363 kb on - strand at 783.387 kb on - strand at 783.420 kb on - strand, within CSW01_03805 at 783.441 kb on + strand, within CSW01_03805 at 783.444 kb on - strand, within CSW01_03805 at 783.446 kb on + strand, within CSW01_03805 at 783.449 kb on - strand, within CSW01_03805 at 783.469 kb on + strand, within CSW01_03805 at 783.572 kb on + strand, within CSW01_03805 at 783.580 kb on - strand, within CSW01_03805 at 783.582 kb on + strand, within CSW01_03805 at 783.585 kb on - strand, within CSW01_03805 at 783.590 kb on - strand, within CSW01_03805 at 783.637 kb on - strand, within CSW01_03805 at 783.710 kb on - strand, within CSW01_03805 at 783.717 kb on - strand, within CSW01_03805 at 783.734 kb on + strand, within CSW01_03805 at 783.787 kb on - strand, within CSW01_03805 at 783.885 kb on - strand, within CSW01_03805 at 784.005 kb on + strand, within CSW01_03805 at 784.051 kb on - strand at 784.053 kb on + strand at 784.137 kb on - strand at 784.192 kb on + strand at 784.216 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1 remove 781,725 - +1.0 781,726 + -1.8 781,736 + -0.2 781,744 - -0.1 781,869 - CSW01_03795 0.20 +1.4 781,919 + CSW01_03795 0.26 -2.4 782,327 + CSW01_03795 0.75 -1.3 782,330 + CSW01_03795 0.76 -2.1 782,554 + -2.9 783,207 + +2.0 783,207 + +1.9 783,207 + -2.6 783,217 - -0.0 783,348 + -0.7 783,355 + +0.8 783,363 - +0.4 783,387 - +0.7 783,420 - CSW01_03805 0.11 +0.8 783,441 + CSW01_03805 0.14 +0.7 783,444 - CSW01_03805 0.14 +0.2 783,446 + CSW01_03805 0.14 -1.2 783,449 - CSW01_03805 0.15 +0.6 783,469 + CSW01_03805 0.17 -0.0 783,572 + CSW01_03805 0.31 +0.9 783,580 - CSW01_03805 0.32 -1.6 783,582 + CSW01_03805 0.32 -2.2 783,585 - CSW01_03805 0.32 +0.9 783,590 - CSW01_03805 0.33 -0.3 783,637 - CSW01_03805 0.39 -1.3 783,710 - CSW01_03805 0.48 -0.4 783,717 - CSW01_03805 0.49 -1.9 783,734 + CSW01_03805 0.51 +1.2 783,787 - CSW01_03805 0.58 -0.5 783,885 - CSW01_03805 0.71 -2.2 784,005 + CSW01_03805 0.86 +0.4 784,051 - -0.2 784,053 + +0.4 784,137 - +0.4 784,192 + -2.1 784,216 - +0.0
Or see this region's nucleotide sequence