Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03430

Experiment: ICP1_phage_235.3_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_03425 and CSW01_03430 are separated by 52 nucleotidesCSW01_03430 and CSW01_03435 are separated by 11 nucleotides CSW01_03425: CSW01_03425 - MATE family efflux transporter, at 692,698 to 694,035 _03425 CSW01_03430: CSW01_03430 - U32 family peptidase, at 694,088 to 694,966 _03430 CSW01_03435: CSW01_03435 - protease, at 694,978 to 695,991 _03435 Position (kb) 694 695Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 693.094 kb on - strand, within CSW01_03425at 693.119 kb on + strand, within CSW01_03425at 693.119 kb on + strand, within CSW01_03425at 693.127 kb on - strand, within CSW01_03425at 693.204 kb on + strand, within CSW01_03425at 693.250 kb on + strand, within CSW01_03425at 693.250 kb on + strand, within CSW01_03425at 693.253 kb on - strand, within CSW01_03425at 693.253 kb on - strand, within CSW01_03425at 693.258 kb on - strand, within CSW01_03425at 693.258 kb on - strand, within CSW01_03425at 693.286 kb on - strand, within CSW01_03425at 693.288 kb on + strand, within CSW01_03425at 693.288 kb on + strand, within CSW01_03425at 693.289 kb on - strand, within CSW01_03425at 693.296 kb on - strand, within CSW01_03425at 693.372 kb on - strand, within CSW01_03425at 693.453 kb on + strand, within CSW01_03425at 693.453 kb on + strand, within CSW01_03425at 693.453 kb on + strand, within CSW01_03425at 693.461 kb on - strand, within CSW01_03425at 693.461 kb on - strand, within CSW01_03425at 693.461 kb on - strand, within CSW01_03425at 693.492 kb on + strand, within CSW01_03425at 693.542 kb on + strand, within CSW01_03425at 693.562 kb on + strand, within CSW01_03425at 693.595 kb on - strand, within CSW01_03425at 693.630 kb on - strand, within CSW01_03425at 693.651 kb on + strand, within CSW01_03425at 693.689 kb on + strand, within CSW01_03425at 693.689 kb on + strand, within CSW01_03425at 693.763 kb on - strand, within CSW01_03425at 693.801 kb on + strand, within CSW01_03425at 693.849 kb on + strand, within CSW01_03425at 693.958 kb on - strandat 693.974 kb on + strandat 693.984 kb on - strandat 694.068 kb on + strandat 694.111 kb on - strandat 694.131 kb on + strandat 694.131 kb on + strandat 694.200 kb on - strand, within CSW01_03430at 694.210 kb on + strand, within CSW01_03430at 694.210 kb on + strand, within CSW01_03430at 694.218 kb on - strand, within CSW01_03430at 694.218 kb on - strand, within CSW01_03430at 694.218 kb on - strand, within CSW01_03430at 694.294 kb on - strand, within CSW01_03430at 694.345 kb on - strand, within CSW01_03430at 694.428 kb on - strand, within CSW01_03430at 694.437 kb on + strand, within CSW01_03430at 694.484 kb on - strand, within CSW01_03430at 694.484 kb on - strand, within CSW01_03430at 694.513 kb on + strand, within CSW01_03430at 694.513 kb on + strand, within CSW01_03430at 694.513 kb on + strand, within CSW01_03430at 694.513 kb on + strand, within CSW01_03430at 694.513 kb on + strand, within CSW01_03430at 694.513 kb on + strand, within CSW01_03430at 694.513 kb on + strand, within CSW01_03430at 694.513 kb on + strand, within CSW01_03430at 694.521 kb on + strand, within CSW01_03430at 694.521 kb on + strand, within CSW01_03430at 694.521 kb on - strand, within CSW01_03430at 694.521 kb on - strand, within CSW01_03430at 694.521 kb on - strand, within CSW01_03430at 694.521 kb on - strand, within CSW01_03430at 694.521 kb on - strand, within CSW01_03430at 694.521 kb on - strand, within CSW01_03430at 694.530 kb on + strand, within CSW01_03430at 694.591 kb on + strand, within CSW01_03430at 694.597 kb on - strand, within CSW01_03430at 694.599 kb on - strand, within CSW01_03430at 694.613 kb on - strand, within CSW01_03430at 694.622 kb on - strand, within CSW01_03430at 694.645 kb on + strand, within CSW01_03430at 694.692 kb on + strand, within CSW01_03430at 694.772 kb on - strand, within CSW01_03430at 694.818 kb on - strand, within CSW01_03430at 694.843 kb on + strand, within CSW01_03430at 694.969 kb on + strandat 695.011 kb on + strandat 695.043 kb on - strandat 695.068 kb on + strandat 695.068 kb on + strandat 695.076 kb on - strandat 695.136 kb on + strand, within CSW01_03435at 695.139 kb on - strand, within CSW01_03435at 695.201 kb on - strand, within CSW01_03435at 695.205 kb on + strand, within CSW01_03435at 695.269 kb on - strand, within CSW01_03435at 695.293 kb on - strand, within CSW01_03435at 695.295 kb on + strand, within CSW01_03435at 695.295 kb on + strand, within CSW01_03435at 695.295 kb on + strand, within CSW01_03435at 695.295 kb on + strand, within CSW01_03435at 695.295 kb on + strand, within CSW01_03435at 695.303 kb on - strand, within CSW01_03435at 695.303 kb on - strand, within CSW01_03435at 695.303 kb on - strand, within CSW01_03435at 695.303 kb on - strand, within CSW01_03435at 695.303 kb on - strand, within CSW01_03435at 695.303 kb on - strand, within CSW01_03435at 695.303 kb on - strand, within CSW01_03435at 695.413 kb on - strand, within CSW01_03435at 695.420 kb on + strand, within CSW01_03435at 695.626 kb on - strand, within CSW01_03435at 695.648 kb on + strand, within CSW01_03435at 695.656 kb on - strand, within CSW01_03435at 695.664 kb on + strand, within CSW01_03435at 695.669 kb on + strand, within CSW01_03435at 695.672 kb on - strand, within CSW01_03435at 695.674 kb on + strand, within CSW01_03435at 695.713 kb on + strand, within CSW01_03435

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
remove
693,094 - CSW01_03425 0.30 +0.6
693,119 + CSW01_03425 0.31 +1.7
693,119 + CSW01_03425 0.31 -3.4
693,127 - CSW01_03425 0.32 +0.3
693,204 + CSW01_03425 0.38 -3.3
693,250 + CSW01_03425 0.41 +0.3
693,250 + CSW01_03425 0.41 +0.5
693,253 - CSW01_03425 0.41 -0.7
693,253 - CSW01_03425 0.41 +1.7
693,258 - CSW01_03425 0.42 +0.6
693,258 - CSW01_03425 0.42 +1.8
693,286 - CSW01_03425 0.44 +1.2
693,288 + CSW01_03425 0.44 +1.5
693,288 + CSW01_03425 0.44 -0.3
693,289 - CSW01_03425 0.44 -1.0
693,296 - CSW01_03425 0.45 +0.7
693,372 - CSW01_03425 0.50 +0.3
693,453 + CSW01_03425 0.56 -1.4
693,453 + CSW01_03425 0.56 +1.0
693,453 + CSW01_03425 0.56 -0.7
693,461 - CSW01_03425 0.57 +1.1
693,461 - CSW01_03425 0.57 +1.1
693,461 - CSW01_03425 0.57 -0.6
693,492 + CSW01_03425 0.59 -3.1
693,542 + CSW01_03425 0.63 -1.1
693,562 + CSW01_03425 0.65 -2.9
693,595 - CSW01_03425 0.67 -2.7
693,630 - CSW01_03425 0.70 +0.0
693,651 + CSW01_03425 0.71 -2.9
693,689 + CSW01_03425 0.74 -0.3
693,689 + CSW01_03425 0.74 -0.8
693,763 - CSW01_03425 0.80 +0.0
693,801 + CSW01_03425 0.82 -1.9
693,849 + CSW01_03425 0.86 +1.3
693,958 - -2.0
693,974 + -0.6
693,984 - -2.0
694,068 + +0.4
694,111 - -0.3
694,131 + -3.1
694,131 + +1.2
694,200 - CSW01_03430 0.13 +0.6
694,210 + CSW01_03430 0.14 -2.6
694,210 + CSW01_03430 0.14 -1.8
694,218 - CSW01_03430 0.15 -2.9
694,218 - CSW01_03430 0.15 +0.6
694,218 - CSW01_03430 0.15 -1.4
694,294 - CSW01_03430 0.23 +0.5
694,345 - CSW01_03430 0.29 +0.4
694,428 - CSW01_03430 0.39 -0.7
694,437 + CSW01_03430 0.40 -0.2
694,484 - CSW01_03430 0.45 +0.8
694,484 - CSW01_03430 0.45 -1.2
694,513 + CSW01_03430 0.48 +0.8
694,513 + CSW01_03430 0.48 +2.3
694,513 + CSW01_03430 0.48 -1.6
694,513 + CSW01_03430 0.48 -1.7
694,513 + CSW01_03430 0.48 -1.3
694,513 + CSW01_03430 0.48 +0.5
694,513 + CSW01_03430 0.48 -1.7
694,513 + CSW01_03430 0.48 -1.4
694,521 + CSW01_03430 0.49 -0.1
694,521 + CSW01_03430 0.49 +2.0
694,521 - CSW01_03430 0.49 +1.0
694,521 - CSW01_03430 0.49 +0.0
694,521 - CSW01_03430 0.49 +1.4
694,521 - CSW01_03430 0.49 -0.7
694,521 - CSW01_03430 0.49 -2.9
694,521 - CSW01_03430 0.49 +0.9
694,530 + CSW01_03430 0.50 +1.5
694,591 + CSW01_03430 0.57 -3.3
694,597 - CSW01_03430 0.58 -1.7
694,599 - CSW01_03430 0.58 -0.2
694,613 - CSW01_03430 0.60 -2.1
694,622 - CSW01_03430 0.61 +0.3
694,645 + CSW01_03430 0.63 -0.8
694,692 + CSW01_03430 0.69 +0.8
694,772 - CSW01_03430 0.78 -0.1
694,818 - CSW01_03430 0.83 +1.2
694,843 + CSW01_03430 0.86 -2.2
694,969 + +1.6
695,011 + -1.8
695,043 - +0.2
695,068 + -0.4
695,068 + -3.6
695,076 - -1.7
695,136 + CSW01_03435 0.16 -0.3
695,139 - CSW01_03435 0.16 +1.3
695,201 - CSW01_03435 0.22 -1.9
695,205 + CSW01_03435 0.22 -2.4
695,269 - CSW01_03435 0.29 -0.1
695,293 - CSW01_03435 0.31 -1.0
695,295 + CSW01_03435 0.31 -2.0
695,295 + CSW01_03435 0.31 -0.7
695,295 + CSW01_03435 0.31 -2.9
695,295 + CSW01_03435 0.31 +0.6
695,295 + CSW01_03435 0.31 -3.2
695,303 - CSW01_03435 0.32 -0.3
695,303 - CSW01_03435 0.32 +1.4
695,303 - CSW01_03435 0.32 +1.6
695,303 - CSW01_03435 0.32 -1.3
695,303 - CSW01_03435 0.32 +0.5
695,303 - CSW01_03435 0.32 +1.5
695,303 - CSW01_03435 0.32 +2.6
695,413 - CSW01_03435 0.43 -0.2
695,420 + CSW01_03435 0.44 +0.9
695,626 - CSW01_03435 0.64 +0.0
695,648 + CSW01_03435 0.66 -1.4
695,656 - CSW01_03435 0.67 +0.4
695,664 + CSW01_03435 0.68 +1.2
695,669 + CSW01_03435 0.68 +0.1
695,672 - CSW01_03435 0.68 +0.9
695,674 + CSW01_03435 0.69 +1.3
695,713 + CSW01_03435 0.72 -1.1

Or see this region's nucleotide sequence