Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03315

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03310 and CSW01_03315 are separated by 130 nucleotidesCSW01_03315 and CSW01_03320 are separated by 67 nucleotides CSW01_03310: CSW01_03310 - peptidase M23, at 669,342 to 670,643 _03310 CSW01_03315: CSW01_03315 - Tyrosine--tRNA ligase 2, at 670,774 to 671,961 _03315 CSW01_03320: CSW01_03320 - serine-type D-Ala-D-Ala carboxypeptidase, at 672,029 to 673,492 _03320 Position (kb) 670 671 672Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 669.787 kb on + strand, within CSW01_03310at 669.865 kb on + strand, within CSW01_03310at 669.873 kb on - strand, within CSW01_03310at 669.945 kb on + strand, within CSW01_03310at 670.070 kb on + strand, within CSW01_03310at 670.075 kb on + strand, within CSW01_03310at 670.075 kb on + strand, within CSW01_03310at 670.075 kb on + strand, within CSW01_03310at 670.075 kb on + strand, within CSW01_03310at 670.075 kb on + strand, within CSW01_03310at 670.075 kb on + strand, within CSW01_03310at 670.078 kb on - strand, within CSW01_03310at 670.078 kb on - strand, within CSW01_03310at 670.083 kb on - strand, within CSW01_03310at 670.085 kb on - strand, within CSW01_03310at 670.090 kb on - strand, within CSW01_03310at 670.131 kb on + strand, within CSW01_03310at 670.209 kb on + strand, within CSW01_03310at 670.220 kb on + strand, within CSW01_03310at 670.220 kb on + strand, within CSW01_03310at 670.220 kb on + strand, within CSW01_03310at 670.220 kb on + strand, within CSW01_03310at 670.228 kb on - strand, within CSW01_03310at 670.228 kb on - strand, within CSW01_03310at 670.228 kb on - strand, within CSW01_03310at 670.228 kb on - strand, within CSW01_03310at 670.290 kb on - strand, within CSW01_03310at 670.340 kb on - strand, within CSW01_03310at 670.398 kb on - strand, within CSW01_03310at 670.406 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.427 kb on + strand, within CSW01_03310at 670.435 kb on - strand, within CSW01_03310at 670.435 kb on - strand, within CSW01_03310at 670.435 kb on - strand, within CSW01_03310at 670.435 kb on - strand, within CSW01_03310at 670.435 kb on - strand, within CSW01_03310at 670.435 kb on - strand, within CSW01_03310at 670.435 kb on - strand, within CSW01_03310at 670.435 kb on - strand, within CSW01_03310at 670.435 kb on - strand, within CSW01_03310at 670.435 kb on - strand, within CSW01_03310at 670.435 kb on - strand, within CSW01_03310at 670.445 kb on - strand, within CSW01_03310at 670.473 kb on - strand, within CSW01_03310at 670.503 kb on - strand, within CSW01_03310at 670.533 kb on + strandat 670.596 kb on + strandat 670.604 kb on - strandat 670.642 kb on - strandat 672.059 kb on - strandat 672.268 kb on - strand, within CSW01_03320at 672.363 kb on - strand, within CSW01_03320at 672.385 kb on + strand, within CSW01_03320at 672.423 kb on - strand, within CSW01_03320at 672.485 kb on + strand, within CSW01_03320at 672.545 kb on + strand, within CSW01_03320at 672.583 kb on - strand, within CSW01_03320at 672.689 kb on - strand, within CSW01_03320at 672.695 kb on - strand, within CSW01_03320at 672.748 kb on - strand, within CSW01_03320at 672.767 kb on + strand, within CSW01_03320at 672.829 kb on + strand, within CSW01_03320at 672.829 kb on + strand, within CSW01_03320at 672.837 kb on - strand, within CSW01_03320at 672.837 kb on - strand, within CSW01_03320at 672.865 kb on + strand, within CSW01_03320at 672.865 kb on + strand, within CSW01_03320at 672.865 kb on + strand, within CSW01_03320at 672.865 kb on + strand, within CSW01_03320at 672.900 kb on + strand, within CSW01_03320at 672.900 kb on + strand, within CSW01_03320at 672.900 kb on + strand, within CSW01_03320at 672.900 kb on + strand, within CSW01_03320at 672.900 kb on + strand, within CSW01_03320at 672.900 kb on + strand, within CSW01_03320at 672.900 kb on + strand, within CSW01_03320at 672.902 kb on + strand, within CSW01_03320at 672.908 kb on - strand, within CSW01_03320at 672.908 kb on - strand, within CSW01_03320at 672.908 kb on - strand, within CSW01_03320at 672.908 kb on - strand, within CSW01_03320at 672.908 kb on - strand, within CSW01_03320at 672.908 kb on - strand, within CSW01_03320at 672.908 kb on - strand, within CSW01_03320at 672.908 kb on - strand, within CSW01_03320

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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669,787 + CSW01_03310 0.34 +0.5
669,865 + CSW01_03310 0.40 +0.9
669,873 - CSW01_03310 0.41 +0.6
669,945 + CSW01_03310 0.46 +0.1
670,070 + CSW01_03310 0.56 -2.7
670,075 + CSW01_03310 0.56 +0.1
670,075 + CSW01_03310 0.56 -0.3
670,075 + CSW01_03310 0.56 +0.1
670,075 + CSW01_03310 0.56 +0.7
670,075 + CSW01_03310 0.56 +0.5
670,075 + CSW01_03310 0.56 +0.2
670,078 - CSW01_03310 0.57 +1.4
670,078 - CSW01_03310 0.57 -2.6
670,083 - CSW01_03310 0.57 +1.1
670,085 - CSW01_03310 0.57 -2.1
670,090 - CSW01_03310 0.57 +1.8
670,131 + CSW01_03310 0.61 +1.2
670,209 + CSW01_03310 0.67 +0.6
670,220 + CSW01_03310 0.67 -1.3
670,220 + CSW01_03310 0.67 +0.8
670,220 + CSW01_03310 0.67 -0.5
670,220 + CSW01_03310 0.67 -0.7
670,228 - CSW01_03310 0.68 +0.9
670,228 - CSW01_03310 0.68 +1.1
670,228 - CSW01_03310 0.68 -1.9
670,228 - CSW01_03310 0.68 +1.3
670,290 - CSW01_03310 0.73 -3.3
670,340 - CSW01_03310 0.77 -0.3
670,398 - CSW01_03310 0.81 -3.4
670,406 + CSW01_03310 0.82 -0.1
670,427 + CSW01_03310 0.83 -1.3
670,427 + CSW01_03310 0.83 -0.5
670,427 + CSW01_03310 0.83 -0.2
670,427 + CSW01_03310 0.83 -1.6
670,427 + CSW01_03310 0.83 -0.3
670,427 + CSW01_03310 0.83 +0.4
670,427 + CSW01_03310 0.83 -0.6
670,427 + CSW01_03310 0.83 +0.6
670,427 + CSW01_03310 0.83 -1.1
670,427 + CSW01_03310 0.83 -2.4
670,427 + CSW01_03310 0.83 -3.5
670,427 + CSW01_03310 0.83 +1.2
670,427 + CSW01_03310 0.83 +0.9
670,435 - CSW01_03310 0.84 -2.0
670,435 - CSW01_03310 0.84 -3.3
670,435 - CSW01_03310 0.84 +0.8
670,435 - CSW01_03310 0.84 -2.4
670,435 - CSW01_03310 0.84 -0.6
670,435 - CSW01_03310 0.84 +1.2
670,435 - CSW01_03310 0.84 +0.2
670,435 - CSW01_03310 0.84 +0.1
670,435 - CSW01_03310 0.84 -2.4
670,435 - CSW01_03310 0.84 +0.3
670,435 - CSW01_03310 0.84 -1.7
670,445 - CSW01_03310 0.85 -2.2
670,473 - CSW01_03310 0.87 -0.3
670,503 - CSW01_03310 0.89 +0.8
670,533 + +0.9
670,596 + +0.2
670,604 - -0.4
670,642 - -1.0
672,059 - +0.3
672,268 - CSW01_03320 0.16 -3.6
672,363 - CSW01_03320 0.23 -2.6
672,385 + CSW01_03320 0.24 -0.1
672,423 - CSW01_03320 0.27 -2.1
672,485 + CSW01_03320 0.31 -1.9
672,545 + CSW01_03320 0.35 +0.2
672,583 - CSW01_03320 0.38 +1.9
672,689 - CSW01_03320 0.45 +0.2
672,695 - CSW01_03320 0.45 +0.8
672,748 - CSW01_03320 0.49 -1.0
672,767 + CSW01_03320 0.50 -2.7
672,829 + CSW01_03320 0.55 +0.3
672,829 + CSW01_03320 0.55 -0.4
672,837 - CSW01_03320 0.55 -2.1
672,837 - CSW01_03320 0.55 -2.1
672,865 + CSW01_03320 0.57 -1.6
672,865 + CSW01_03320 0.57 +1.3
672,865 + CSW01_03320 0.57 +0.9
672,865 + CSW01_03320 0.57 -0.6
672,900 + CSW01_03320 0.59 -1.9
672,900 + CSW01_03320 0.59 -1.9
672,900 + CSW01_03320 0.59 +0.7
672,900 + CSW01_03320 0.59 +0.2
672,900 + CSW01_03320 0.59 -0.3
672,900 + CSW01_03320 0.59 -0.7
672,900 + CSW01_03320 0.59 +0.1
672,902 + CSW01_03320 0.60 -2.9
672,908 - CSW01_03320 0.60 +1.3
672,908 - CSW01_03320 0.60 -1.4
672,908 - CSW01_03320 0.60 +0.0
672,908 - CSW01_03320 0.60 +0.6
672,908 - CSW01_03320 0.60 +1.3
672,908 - CSW01_03320 0.60 -2.1
672,908 - CSW01_03320 0.60 -0.2
672,908 - CSW01_03320 0.60 -0.3

Or see this region's nucleotide sequence