Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03305

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03300 and CSW01_03305 are separated by 10 nucleotidesCSW01_03305 and CSW01_03310 are separated by 81 nucleotides CSW01_03300: CSW01_03300 - efflux RND transporter periplasmic adaptor subunit, at 665,030 to 666,130 _03300 CSW01_03305: CSW01_03305 - AcrB/AcrD/AcrF family protein, at 666,141 to 669,260 _03305 CSW01_03310: CSW01_03310 - peptidase M23, at 669,342 to 670,643 _03310 Position (kb) 666 667 668 669 670Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 665.248 kb on + strand, within CSW01_03300at 665.451 kb on - strand, within CSW01_03300at 665.451 kb on - strand, within CSW01_03300at 665.527 kb on + strand, within CSW01_03300at 665.527 kb on + strand, within CSW01_03300at 665.527 kb on + strand, within CSW01_03300at 665.527 kb on + strand, within CSW01_03300at 665.532 kb on + strand, within CSW01_03300at 665.532 kb on + strand, within CSW01_03300at 665.532 kb on + strand, within CSW01_03300at 665.535 kb on - strand, within CSW01_03300at 665.535 kb on - strand, within CSW01_03300at 665.537 kb on + strand, within CSW01_03300at 665.537 kb on + strand, within CSW01_03300at 665.537 kb on + strand, within CSW01_03300at 665.540 kb on - strand, within CSW01_03300at 665.540 kb on - strand, within CSW01_03300at 665.545 kb on - strand, within CSW01_03300at 665.595 kb on - strand, within CSW01_03300at 665.601 kb on - strand, within CSW01_03300at 665.698 kb on + strand, within CSW01_03300at 665.785 kb on - strand, within CSW01_03300at 665.873 kb on - strand, within CSW01_03300at 665.881 kb on - strand, within CSW01_03300at 665.884 kb on - strand, within CSW01_03300at 665.890 kb on + strand, within CSW01_03300at 665.977 kb on + strand, within CSW01_03300at 665.977 kb on + strand, within CSW01_03300at 665.977 kb on + strand, within CSW01_03300at 665.985 kb on - strand, within CSW01_03300at 666.001 kb on + strand, within CSW01_03300at 666.082 kb on - strandat 666.105 kb on + strandat 666.115 kb on - strandat 666.115 kb on - strandat 666.115 kb on - strandat 666.115 kb on - strandat 666.162 kb on + strandat 666.167 kb on + strandat 666.183 kb on + strandat 666.190 kb on + strandat 666.190 kb on + strandat 666.191 kb on - strandat 666.191 kb on - strandat 666.325 kb on + strandat 666.333 kb on - strandat 666.369 kb on - strandat 666.369 kb on - strandat 666.417 kb on + strandat 666.417 kb on - strandat 666.511 kb on + strand, within CSW01_03305at 666.511 kb on + strand, within CSW01_03305at 666.519 kb on - strand, within CSW01_03305at 666.544 kb on + strand, within CSW01_03305at 666.558 kb on + strand, within CSW01_03305at 666.567 kb on + strand, within CSW01_03305at 666.572 kb on + strand, within CSW01_03305at 666.580 kb on + strand, within CSW01_03305at 666.580 kb on + strand, within CSW01_03305at 666.580 kb on + strand, within CSW01_03305at 666.580 kb on + strand, within CSW01_03305at 666.583 kb on - strand, within CSW01_03305at 666.588 kb on - strand, within CSW01_03305at 666.590 kb on + strand, within CSW01_03305at 666.593 kb on + strand, within CSW01_03305at 666.593 kb on - strand, within CSW01_03305at 666.593 kb on - strand, within CSW01_03305at 666.593 kb on - strand, within CSW01_03305at 666.724 kb on + strand, within CSW01_03305at 666.724 kb on + strand, within CSW01_03305at 666.732 kb on - strand, within CSW01_03305at 666.732 kb on - strand, within CSW01_03305at 666.752 kb on - strand, within CSW01_03305at 666.839 kb on + strand, within CSW01_03305at 666.859 kb on + strand, within CSW01_03305at 666.859 kb on + strand, within CSW01_03305at 666.864 kb on - strand, within CSW01_03305at 667.024 kb on + strand, within CSW01_03305at 667.032 kb on - strand, within CSW01_03305at 667.032 kb on - strand, within CSW01_03305at 667.042 kb on - strand, within CSW01_03305at 667.042 kb on - strand, within CSW01_03305at 667.042 kb on - strand, within CSW01_03305at 667.044 kb on + strand, within CSW01_03305at 667.051 kb on - strand, within CSW01_03305at 667.056 kb on + strand, within CSW01_03305at 667.064 kb on - strand, within CSW01_03305at 667.064 kb on - strand, within CSW01_03305at 667.064 kb on - strand, within CSW01_03305at 667.111 kb on + strand, within CSW01_03305at 667.185 kb on - strand, within CSW01_03305at 667.265 kb on - strand, within CSW01_03305at 667.297 kb on + strand, within CSW01_03305at 667.406 kb on + strand, within CSW01_03305at 667.427 kb on + strand, within CSW01_03305at 667.450 kb on + strand, within CSW01_03305at 667.458 kb on - strand, within CSW01_03305at 667.572 kb on + strand, within CSW01_03305at 667.572 kb on + strand, within CSW01_03305at 667.602 kb on + strand, within CSW01_03305at 667.656 kb on - strand, within CSW01_03305at 667.706 kb on - strand, within CSW01_03305at 667.744 kb on - strand, within CSW01_03305at 667.758 kb on + strand, within CSW01_03305at 667.758 kb on + strand, within CSW01_03305at 667.758 kb on + strand, within CSW01_03305at 667.766 kb on - strand, within CSW01_03305at 667.766 kb on - strand, within CSW01_03305at 667.768 kb on - strand, within CSW01_03305at 667.807 kb on - strand, within CSW01_03305at 667.807 kb on - strand, within CSW01_03305at 667.808 kb on - strand, within CSW01_03305at 667.859 kb on + strand, within CSW01_03305at 667.906 kb on + strand, within CSW01_03305at 667.914 kb on - strand, within CSW01_03305at 667.924 kb on - strand, within CSW01_03305at 667.924 kb on - strand, within CSW01_03305at 667.924 kb on - strand, within CSW01_03305at 667.935 kb on - strand, within CSW01_03305at 667.937 kb on + strand, within CSW01_03305at 667.947 kb on + strand, within CSW01_03305at 667.947 kb on + strand, within CSW01_03305at 667.955 kb on - strand, within CSW01_03305at 667.955 kb on - strand, within CSW01_03305at 668.023 kb on + strand, within CSW01_03305at 668.031 kb on - strand, within CSW01_03305at 668.201 kb on + strand, within CSW01_03305at 668.243 kb on + strand, within CSW01_03305at 668.475 kb on - strand, within CSW01_03305at 668.488 kb on - strand, within CSW01_03305at 668.495 kb on + strand, within CSW01_03305at 668.563 kb on - strand, within CSW01_03305at 668.577 kb on + strand, within CSW01_03305at 668.577 kb on + strand, within CSW01_03305at 668.577 kb on + strand, within CSW01_03305at 668.585 kb on - strand, within CSW01_03305at 668.585 kb on - strand, within CSW01_03305at 668.587 kb on - strand, within CSW01_03305at 668.605 kb on + strand, within CSW01_03305at 668.719 kb on - strand, within CSW01_03305at 668.756 kb on + strand, within CSW01_03305at 668.756 kb on + strand, within CSW01_03305at 668.764 kb on - strand, within CSW01_03305at 668.764 kb on - strand, within CSW01_03305at 668.764 kb on - strand, within CSW01_03305at 668.791 kb on - strand, within CSW01_03305at 668.906 kb on + strand, within CSW01_03305at 668.906 kb on + strand, within CSW01_03305at 668.976 kb on - strandat 669.014 kb on - strandat 669.108 kb on + strandat 669.108 kb on + strandat 669.116 kb on - strandat 669.116 kb on - strandat 669.126 kb on - strandat 669.147 kb on + strandat 669.155 kb on - strandat 669.155 kb on - strandat 669.165 kb on + strandat 669.165 kb on + strandat 669.165 kb on + strandat 669.165 kb on + strandat 669.165 kb on + strandat 669.165 kb on + strandat 669.165 kb on + strandat 669.172 kb on + strandat 669.172 kb on + strandat 669.172 kb on + strandat 669.173 kb on - strandat 669.173 kb on - strandat 669.180 kb on - strandat 669.180 kb on - strandat 669.180 kb on - strandat 669.180 kb on - strandat 669.180 kb on - strandat 669.180 kb on - strandat 669.199 kb on + strandat 669.199 kb on + strandat 669.207 kb on - strandat 669.207 kb on - strandat 669.220 kb on + strandat 669.254 kb on + strandat 669.262 kb on - strandat 669.285 kb on - strandat 669.415 kb on - strandat 669.433 kb on + strandat 669.443 kb on - strandat 669.463 kb on - strandat 669.597 kb on - strand, within CSW01_03310at 669.631 kb on - strand, within CSW01_03310at 669.631 kb on - strand, within CSW01_03310at 669.747 kb on - strand, within CSW01_03310at 669.751 kb on + strand, within CSW01_03310at 669.759 kb on - strand, within CSW01_03310at 669.787 kb on + strand, within CSW01_03310at 669.865 kb on + strand, within CSW01_03310at 669.873 kb on - strand, within CSW01_03310at 669.945 kb on + strand, within CSW01_03310at 670.070 kb on + strand, within CSW01_03310at 670.075 kb on + strand, within CSW01_03310at 670.075 kb on + strand, within CSW01_03310at 670.075 kb on + strand, within CSW01_03310at 670.075 kb on + strand, within CSW01_03310at 670.075 kb on + strand, within CSW01_03310at 670.075 kb on + strand, within CSW01_03310at 670.078 kb on - strand, within CSW01_03310at 670.078 kb on - strand, within CSW01_03310at 670.083 kb on - strand, within CSW01_03310at 670.085 kb on - strand, within CSW01_03310at 670.090 kb on - strand, within CSW01_03310at 670.131 kb on + strand, within CSW01_03310at 670.209 kb on + strand, within CSW01_03310at 670.220 kb on + strand, within CSW01_03310at 670.220 kb on + strand, within CSW01_03310at 670.220 kb on + strand, within CSW01_03310at 670.220 kb on + strand, within CSW01_03310at 670.228 kb on - strand, within CSW01_03310at 670.228 kb on - strand, within CSW01_03310at 670.228 kb on - strand, within CSW01_03310at 670.228 kb on - strand, within CSW01_03310

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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665,248 + CSW01_03300 0.20 -0.5
665,451 - CSW01_03300 0.38 -0.4
665,451 - CSW01_03300 0.38 +0.3
665,527 + CSW01_03300 0.45 -1.4
665,527 + CSW01_03300 0.45 -1.1
665,527 + CSW01_03300 0.45 -0.0
665,527 + CSW01_03300 0.45 +1.0
665,532 + CSW01_03300 0.46 +0.7
665,532 + CSW01_03300 0.46 -2.9
665,532 + CSW01_03300 0.46 +0.0
665,535 - CSW01_03300 0.46 -0.3
665,535 - CSW01_03300 0.46 +0.3
665,537 + CSW01_03300 0.46 +0.6
665,537 + CSW01_03300 0.46 -3.5
665,537 + CSW01_03300 0.46 +0.9
665,540 - CSW01_03300 0.46 +2.2
665,540 - CSW01_03300 0.46 -1.9
665,545 - CSW01_03300 0.47 -2.0
665,595 - CSW01_03300 0.51 -1.3
665,601 - CSW01_03300 0.52 -0.0
665,698 + CSW01_03300 0.61 +0.6
665,785 - CSW01_03300 0.69 +1.0
665,873 - CSW01_03300 0.77 +0.2
665,881 - CSW01_03300 0.77 -1.7
665,884 - CSW01_03300 0.78 +0.1
665,890 + CSW01_03300 0.78 +0.1
665,977 + CSW01_03300 0.86 +3.5
665,977 + CSW01_03300 0.86 +1.3
665,977 + CSW01_03300 0.86 +0.3
665,985 - CSW01_03300 0.87 -0.7
666,001 + CSW01_03300 0.88 +2.0
666,082 - +1.8
666,105 + +1.1
666,115 - -1.1
666,115 - +0.2
666,115 - -0.5
666,115 - -0.9
666,162 + -0.4
666,167 + +1.0
666,183 + +1.3
666,190 + -1.1
666,190 + -0.1
666,191 - -1.1
666,191 - -2.4
666,325 + -1.7
666,333 - -2.1
666,369 - -2.4
666,369 - -0.6
666,417 + -0.8
666,417 - -0.8
666,511 + CSW01_03305 0.12 +0.0
666,511 + CSW01_03305 0.12 +0.9
666,519 - CSW01_03305 0.12 +0.8
666,544 + CSW01_03305 0.13 +0.8
666,558 + CSW01_03305 0.13 -0.8
666,567 + CSW01_03305 0.14 -0.5
666,572 + CSW01_03305 0.14 -1.6
666,580 + CSW01_03305 0.14 -1.8
666,580 + CSW01_03305 0.14 +1.5
666,580 + CSW01_03305 0.14 +0.8
666,580 + CSW01_03305 0.14 +0.1
666,583 - CSW01_03305 0.14 +1.6
666,588 - CSW01_03305 0.14 +0.4
666,590 + CSW01_03305 0.14 -0.2
666,593 + CSW01_03305 0.14 -1.0
666,593 - CSW01_03305 0.14 +2.3
666,593 - CSW01_03305 0.14 +0.2
666,593 - CSW01_03305 0.14 +1.3
666,724 + CSW01_03305 0.19 -0.2
666,724 + CSW01_03305 0.19 +1.5
666,732 - CSW01_03305 0.19 -2.3
666,732 - CSW01_03305 0.19 -4.9
666,752 - CSW01_03305 0.20 -0.4
666,839 + CSW01_03305 0.22 -2.5
666,859 + CSW01_03305 0.23 +0.5
666,859 + CSW01_03305 0.23 +0.8
666,864 - CSW01_03305 0.23 +1.1
667,024 + CSW01_03305 0.28 -0.5
667,032 - CSW01_03305 0.29 +0.6
667,032 - CSW01_03305 0.29 -1.0
667,042 - CSW01_03305 0.29 +0.4
667,042 - CSW01_03305 0.29 -2.8
667,042 - CSW01_03305 0.29 +1.1
667,044 + CSW01_03305 0.29 -1.2
667,051 - CSW01_03305 0.29 +0.8
667,056 + CSW01_03305 0.29 +1.3
667,064 - CSW01_03305 0.30 -3.2
667,064 - CSW01_03305 0.30 -2.7
667,064 - CSW01_03305 0.30 +0.6
667,111 + CSW01_03305 0.31 +0.0
667,185 - CSW01_03305 0.33 +1.9
667,265 - CSW01_03305 0.36 +0.3
667,297 + CSW01_03305 0.37 +1.9
667,406 + CSW01_03305 0.41 -0.3
667,427 + CSW01_03305 0.41 +0.5
667,450 + CSW01_03305 0.42 -1.1
667,458 - CSW01_03305 0.42 -0.1
667,572 + CSW01_03305 0.46 +1.7
667,572 + CSW01_03305 0.46 -2.5
667,602 + CSW01_03305 0.47 -2.7
667,656 - CSW01_03305 0.49 +0.3
667,706 - CSW01_03305 0.50 -0.1
667,744 - CSW01_03305 0.51 +1.2
667,758 + CSW01_03305 0.52 -2.4
667,758 + CSW01_03305 0.52 -2.4
667,758 + CSW01_03305 0.52 +0.0
667,766 - CSW01_03305 0.52 +1.5
667,766 - CSW01_03305 0.52 -2.6
667,768 - CSW01_03305 0.52 +0.9
667,807 - CSW01_03305 0.53 -1.3
667,807 - CSW01_03305 0.53 -2.2
667,808 - CSW01_03305 0.53 -3.5
667,859 + CSW01_03305 0.55 -0.1
667,906 + CSW01_03305 0.57 -1.9
667,914 - CSW01_03305 0.57 +0.8
667,924 - CSW01_03305 0.57 -1.5
667,924 - CSW01_03305 0.57 -0.5
667,924 - CSW01_03305 0.57 -0.9
667,935 - CSW01_03305 0.57 +0.4
667,937 + CSW01_03305 0.58 -0.1
667,947 + CSW01_03305 0.58 +0.9
667,947 + CSW01_03305 0.58 +0.7
667,955 - CSW01_03305 0.58 -0.4
667,955 - CSW01_03305 0.58 -3.2
668,023 + CSW01_03305 0.60 +0.3
668,031 - CSW01_03305 0.61 -1.5
668,201 + CSW01_03305 0.66 +0.9
668,243 + CSW01_03305 0.67 -0.6
668,475 - CSW01_03305 0.75 -1.0
668,488 - CSW01_03305 0.75 +0.6
668,495 + CSW01_03305 0.75 +0.9
668,563 - CSW01_03305 0.78 +1.4
668,577 + CSW01_03305 0.78 +1.0
668,577 + CSW01_03305 0.78 +1.8
668,577 + CSW01_03305 0.78 -2.4
668,585 - CSW01_03305 0.78 +0.5
668,585 - CSW01_03305 0.78 +1.0
668,587 - CSW01_03305 0.78 -1.7
668,605 + CSW01_03305 0.79 -1.7
668,719 - CSW01_03305 0.83 +0.4
668,756 + CSW01_03305 0.84 -0.9
668,756 + CSW01_03305 0.84 +0.5
668,764 - CSW01_03305 0.84 +0.9
668,764 - CSW01_03305 0.84 -0.2
668,764 - CSW01_03305 0.84 +1.4
668,791 - CSW01_03305 0.85 +0.0
668,906 + CSW01_03305 0.89 +0.3
668,906 + CSW01_03305 0.89 +0.4
668,976 - +1.4
669,014 - +0.0
669,108 + +0.5
669,108 + -1.4
669,116 - +0.9
669,116 - +1.2
669,126 - -0.6
669,147 + -2.6
669,155 - +0.4
669,155 - -2.9
669,165 + +0.2
669,165 + +0.4
669,165 + +1.2
669,165 + +1.7
669,165 + -2.7
669,165 + +0.1
669,165 + -0.4
669,172 + -0.6
669,172 + -1.3
669,172 + +1.8
669,173 - -0.1
669,173 - +1.6
669,180 - +1.0
669,180 - -2.1
669,180 - -2.3
669,180 - -0.8
669,180 - +2.9
669,180 - -1.1
669,199 + +1.5
669,199 + -1.1
669,207 - -0.5
669,207 - +0.6
669,220 + -0.6
669,254 + +2.3
669,262 - -0.8
669,285 - +0.6
669,415 - -0.2
669,433 + -1.7
669,443 - +2.4
669,463 - -1.0
669,597 - CSW01_03310 0.20 +0.2
669,631 - CSW01_03310 0.22 +1.2
669,631 - CSW01_03310 0.22 -1.8
669,747 - CSW01_03310 0.31 -0.8
669,751 + CSW01_03310 0.31 +0.3
669,759 - CSW01_03310 0.32 +2.1
669,787 + CSW01_03310 0.34 +0.5
669,865 + CSW01_03310 0.40 +0.9
669,873 - CSW01_03310 0.41 +0.6
669,945 + CSW01_03310 0.46 +0.1
670,070 + CSW01_03310 0.56 -2.7
670,075 + CSW01_03310 0.56 +0.1
670,075 + CSW01_03310 0.56 -0.3
670,075 + CSW01_03310 0.56 +0.1
670,075 + CSW01_03310 0.56 +0.7
670,075 + CSW01_03310 0.56 +0.5
670,075 + CSW01_03310 0.56 +0.2
670,078 - CSW01_03310 0.57 +1.4
670,078 - CSW01_03310 0.57 -2.6
670,083 - CSW01_03310 0.57 +1.1
670,085 - CSW01_03310 0.57 -2.1
670,090 - CSW01_03310 0.57 +1.8
670,131 + CSW01_03310 0.61 +1.2
670,209 + CSW01_03310 0.67 +0.6
670,220 + CSW01_03310 0.67 -1.3
670,220 + CSW01_03310 0.67 +0.8
670,220 + CSW01_03310 0.67 -0.5
670,220 + CSW01_03310 0.67 -0.7
670,228 - CSW01_03310 0.68 +0.9
670,228 - CSW01_03310 0.68 +1.1
670,228 - CSW01_03310 0.68 -1.9
670,228 - CSW01_03310 0.68 +1.3

Or see this region's nucleotide sequence