Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02815

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02805 and CSW01_02810 overlap by 4 nucleotidesCSW01_02810 and CSW01_02815 are separated by 29 nucleotidesCSW01_02815 and CSW01_02820 overlap by 38 nucleotidesCSW01_02820 and CSW01_02825 overlap by 8 nucleotides CSW01_02805: CSW01_02805 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 558,805 to 559,503 _02805 CSW01_02810: CSW01_02810 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 559,500 to 559,976 _02810 CSW01_02815: CSW01_02815 - tRNA pseudouridine(13) synthase TruD, at 560,006 to 561,091 _02815 CSW01_02820: CSW01_02820 - 5'-nucleotidase SurE, at 561,054 to 561,845 _02820 CSW01_02825: CSW01_02825 - protein-L-isoaspartate O-methyltransferase, at 561,838 to 562,464 _02825 Position (kb) 560 561 562Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 559.971 kb on + strandat 559.971 kb on + strandat 559.979 kb on - strandat 559.979 kb on - strandat 560.032 kb on - strandat 560.059 kb on + strandat 560.059 kb on + strandat 560.086 kb on + strandat 560.102 kb on + strandat 560.102 kb on + strandat 560.110 kb on - strandat 560.136 kb on + strand, within CSW01_02815at 560.162 kb on + strand, within CSW01_02815at 560.162 kb on + strand, within CSW01_02815at 560.172 kb on - strand, within CSW01_02815at 560.269 kb on + strand, within CSW01_02815at 560.269 kb on + strand, within CSW01_02815at 560.277 kb on - strand, within CSW01_02815at 560.327 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.454 kb on - strand, within CSW01_02815at 560.520 kb on + strand, within CSW01_02815at 560.527 kb on + strand, within CSW01_02815at 560.552 kb on - strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.597 kb on - strand, within CSW01_02815at 560.597 kb on - strand, within CSW01_02815at 560.597 kb on - strand, within CSW01_02815at 560.597 kb on - strand, within CSW01_02815at 560.597 kb on - strand, within CSW01_02815at 560.597 kb on - strand, within CSW01_02815at 560.597 kb on - strand, within CSW01_02815at 560.607 kb on - strand, within CSW01_02815at 560.653 kb on + strand, within CSW01_02815at 560.661 kb on - strand, within CSW01_02815at 560.724 kb on + strand, within CSW01_02815at 560.737 kb on + strand, within CSW01_02815at 560.796 kb on - strand, within CSW01_02815at 560.810 kb on + strand, within CSW01_02815at 560.810 kb on + strand, within CSW01_02815at 560.818 kb on - strand, within CSW01_02815at 560.956 kb on - strand, within CSW01_02815at 560.975 kb on + strand, within CSW01_02815at 560.975 kb on + strand, within CSW01_02815at 561.024 kb on + strandat 561.024 kb on + strandat 561.030 kb on - strandat 561.229 kb on + strand, within CSW01_02820at 561.237 kb on - strand, within CSW01_02820at 561.237 kb on - strand, within CSW01_02820at 561.237 kb on - strand, within CSW01_02820at 561.237 kb on - strand, within CSW01_02820at 561.259 kb on - strand, within CSW01_02820at 561.334 kb on - strand, within CSW01_02820at 561.346 kb on + strand, within CSW01_02820at 561.373 kb on + strand, within CSW01_02820at 561.406 kb on - strand, within CSW01_02820at 561.465 kb on - strand, within CSW01_02820at 561.525 kb on + strand, within CSW01_02820at 561.756 kb on + strand, within CSW01_02820at 561.770 kb on + strandat 561.778 kb on - strandat 561.894 kb on - strandat 561.960 kb on + strand, within CSW01_02825at 561.977 kb on + strand, within CSW01_02825at 561.987 kb on + strand, within CSW01_02825at 561.987 kb on + strand, within CSW01_02825at 561.994 kb on + strand, within CSW01_02825at 561.995 kb on + strand, within CSW01_02825at 562.000 kb on + strand, within CSW01_02825at 562.000 kb on + strand, within CSW01_02825at 562.002 kb on - strand, within CSW01_02825at 562.002 kb on - strand, within CSW01_02825at 562.003 kb on - strand, within CSW01_02825at 562.008 kb on - strand, within CSW01_02825at 562.008 kb on - strand, within CSW01_02825at 562.017 kb on + strand, within CSW01_02825at 562.025 kb on - strand, within CSW01_02825

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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559,971 + +1.4
559,971 + -1.3
559,979 - -2.0
559,979 - -2.4
560,032 - -1.0
560,059 + +1.8
560,059 + -0.3
560,086 + +0.2
560,102 + +0.3
560,102 + +0.6
560,110 - +1.0
560,136 + CSW01_02815 0.12 -3.1
560,162 + CSW01_02815 0.14 +1.1
560,162 + CSW01_02815 0.14 -1.2
560,172 - CSW01_02815 0.15 -2.9
560,269 + CSW01_02815 0.24 -1.0
560,269 + CSW01_02815 0.24 +1.2
560,277 - CSW01_02815 0.25 -0.1
560,327 + CSW01_02815 0.30 +1.6
560,444 + CSW01_02815 0.40 +0.1
560,444 + CSW01_02815 0.40 +0.5
560,444 + CSW01_02815 0.40 -2.6
560,444 + CSW01_02815 0.40 +1.1
560,444 + CSW01_02815 0.40 +0.7
560,444 + CSW01_02815 0.40 -0.3
560,444 + CSW01_02815 0.40 +0.6
560,444 + CSW01_02815 0.40 +0.4
560,444 + CSW01_02815 0.40 -1.1
560,452 - CSW01_02815 0.41 +0.4
560,452 - CSW01_02815 0.41 -1.7
560,452 - CSW01_02815 0.41 +0.3
560,452 - CSW01_02815 0.41 +0.9
560,452 - CSW01_02815 0.41 -2.2
560,452 - CSW01_02815 0.41 +1.7
560,452 - CSW01_02815 0.41 -3.6
560,452 - CSW01_02815 0.41 -0.2
560,452 - CSW01_02815 0.41 -1.0
560,452 - CSW01_02815 0.41 -3.0
560,452 - CSW01_02815 0.41 +0.7
560,454 - CSW01_02815 0.41 -0.1
560,520 + CSW01_02815 0.47 -1.1
560,527 + CSW01_02815 0.48 +1.4
560,552 - CSW01_02815 0.50 +0.5
560,589 + CSW01_02815 0.54 -2.0
560,589 + CSW01_02815 0.54 +0.8
560,589 + CSW01_02815 0.54 -0.0
560,589 + CSW01_02815 0.54 +1.0
560,589 + CSW01_02815 0.54 +0.9
560,589 + CSW01_02815 0.54 +1.3
560,589 + CSW01_02815 0.54 -0.4
560,589 + CSW01_02815 0.54 +2.1
560,589 + CSW01_02815 0.54 +2.0
560,597 - CSW01_02815 0.54 +0.1
560,597 - CSW01_02815 0.54 +0.3
560,597 - CSW01_02815 0.54 +2.0
560,597 - CSW01_02815 0.54 +1.2
560,597 - CSW01_02815 0.54 -0.6
560,597 - CSW01_02815 0.54 +0.3
560,597 - CSW01_02815 0.54 -1.1
560,607 - CSW01_02815 0.55 -1.0
560,653 + CSW01_02815 0.60 -1.2
560,661 - CSW01_02815 0.60 -0.7
560,724 + CSW01_02815 0.66 +0.1
560,737 + CSW01_02815 0.67 +0.8
560,796 - CSW01_02815 0.73 -4.0
560,810 + CSW01_02815 0.74 +1.4
560,810 + CSW01_02815 0.74 +0.6
560,818 - CSW01_02815 0.75 -1.9
560,956 - CSW01_02815 0.87 -0.4
560,975 + CSW01_02815 0.89 -1.0
560,975 + CSW01_02815 0.89 +1.1
561,024 + +0.4
561,024 + +1.0
561,030 - -0.5
561,229 + CSW01_02820 0.22 +0.1
561,237 - CSW01_02820 0.23 -1.9
561,237 - CSW01_02820 0.23 -0.1
561,237 - CSW01_02820 0.23 -1.7
561,237 - CSW01_02820 0.23 +1.0
561,259 - CSW01_02820 0.26 -0.3
561,334 - CSW01_02820 0.35 -0.3
561,346 + CSW01_02820 0.37 +1.0
561,373 + CSW01_02820 0.40 +0.2
561,406 - CSW01_02820 0.44 -0.3
561,465 - CSW01_02820 0.52 +0.2
561,525 + CSW01_02820 0.59 -1.2
561,756 + CSW01_02820 0.89 +0.5
561,770 + +0.5
561,778 - -3.4
561,894 - +0.1
561,960 + CSW01_02825 0.19 -0.3
561,977 + CSW01_02825 0.22 +0.4
561,987 + CSW01_02825 0.24 +0.3
561,987 + CSW01_02825 0.24 +0.8
561,994 + CSW01_02825 0.25 -1.3
561,995 + CSW01_02825 0.25 -0.8
562,000 + CSW01_02825 0.26 +0.4
562,000 + CSW01_02825 0.26 -1.4
562,002 - CSW01_02825 0.26 +2.2
562,002 - CSW01_02825 0.26 +1.9
562,003 - CSW01_02825 0.26 +0.5
562,008 - CSW01_02825 0.27 +1.1
562,008 - CSW01_02825 0.27 -1.2
562,017 + CSW01_02825 0.29 -2.1
562,025 - CSW01_02825 0.30 -3.3

Or see this region's nucleotide sequence