Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02810

Experiment: ICP1_phage_235.3_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_02800 and CSW01_02805 overlap by 4 nucleotidesCSW01_02805 and CSW01_02810 overlap by 4 nucleotidesCSW01_02810 and CSW01_02815 are separated by 29 nucleotides CSW01_02800: CSW01_02800 - cell division protein FtsB, at 558,518 to 558,808 _02800 CSW01_02805: CSW01_02805 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 558,805 to 559,503 _02805 CSW01_02810: CSW01_02810 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 559,500 to 559,976 _02810 CSW01_02815: CSW01_02815 - tRNA pseudouridine(13) synthase TruD, at 560,006 to 561,091 _02815 Position (kb) 559 560Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 558.506 kb on - strandat 558.515 kb on + strandat 558.789 kb on + strandat 558.802 kb on + strandat 558.807 kb on + strandat 559.971 kb on + strandat 559.971 kb on + strandat 559.979 kb on - strandat 559.979 kb on - strandat 560.032 kb on - strandat 560.059 kb on + strandat 560.059 kb on + strandat 560.086 kb on + strandat 560.102 kb on + strandat 560.102 kb on + strandat 560.110 kb on - strandat 560.136 kb on + strand, within CSW01_02815at 560.162 kb on + strand, within CSW01_02815at 560.162 kb on + strand, within CSW01_02815at 560.172 kb on - strand, within CSW01_02815at 560.269 kb on + strand, within CSW01_02815at 560.269 kb on + strand, within CSW01_02815at 560.277 kb on - strand, within CSW01_02815at 560.327 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.454 kb on - strand, within CSW01_02815at 560.520 kb on + strand, within CSW01_02815at 560.527 kb on + strand, within CSW01_02815at 560.552 kb on - strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.589 kb on + strand, within CSW01_02815at 560.597 kb on - strand, within CSW01_02815at 560.597 kb on - strand, within CSW01_02815at 560.597 kb on - strand, within CSW01_02815at 560.597 kb on - strand, within CSW01_02815at 560.597 kb on - strand, within CSW01_02815at 560.597 kb on - strand, within CSW01_02815at 560.597 kb on - strand, within CSW01_02815at 560.607 kb on - strand, within CSW01_02815at 560.653 kb on + strand, within CSW01_02815at 560.661 kb on - strand, within CSW01_02815at 560.724 kb on + strand, within CSW01_02815at 560.737 kb on + strand, within CSW01_02815at 560.796 kb on - strand, within CSW01_02815at 560.810 kb on + strand, within CSW01_02815at 560.810 kb on + strand, within CSW01_02815at 560.818 kb on - strand, within CSW01_02815at 560.956 kb on - strand, within CSW01_02815at 560.975 kb on + strand, within CSW01_02815at 560.975 kb on + strand, within CSW01_02815

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
remove
558,506 - -1.2
558,515 + -2.7
558,789 + +1.7
558,802 + -1.8
558,807 + +1.0
559,971 + +1.4
559,971 + -1.3
559,979 - -2.0
559,979 - -2.4
560,032 - -1.0
560,059 + +1.8
560,059 + -0.3
560,086 + +0.2
560,102 + +0.3
560,102 + +0.6
560,110 - +1.0
560,136 + CSW01_02815 0.12 -3.1
560,162 + CSW01_02815 0.14 +1.1
560,162 + CSW01_02815 0.14 -1.2
560,172 - CSW01_02815 0.15 -2.9
560,269 + CSW01_02815 0.24 -1.0
560,269 + CSW01_02815 0.24 +1.2
560,277 - CSW01_02815 0.25 -0.1
560,327 + CSW01_02815 0.30 +1.6
560,444 + CSW01_02815 0.40 +0.1
560,444 + CSW01_02815 0.40 +0.5
560,444 + CSW01_02815 0.40 -2.6
560,444 + CSW01_02815 0.40 +1.1
560,444 + CSW01_02815 0.40 +0.7
560,444 + CSW01_02815 0.40 -0.3
560,444 + CSW01_02815 0.40 +0.6
560,444 + CSW01_02815 0.40 +0.4
560,444 + CSW01_02815 0.40 -1.1
560,452 - CSW01_02815 0.41 +0.4
560,452 - CSW01_02815 0.41 -1.7
560,452 - CSW01_02815 0.41 +0.3
560,452 - CSW01_02815 0.41 +0.9
560,452 - CSW01_02815 0.41 -2.2
560,452 - CSW01_02815 0.41 +1.7
560,452 - CSW01_02815 0.41 -3.6
560,452 - CSW01_02815 0.41 -0.2
560,452 - CSW01_02815 0.41 -1.0
560,452 - CSW01_02815 0.41 -3.0
560,452 - CSW01_02815 0.41 +0.7
560,454 - CSW01_02815 0.41 -0.1
560,520 + CSW01_02815 0.47 -1.1
560,527 + CSW01_02815 0.48 +1.4
560,552 - CSW01_02815 0.50 +0.5
560,589 + CSW01_02815 0.54 -2.0
560,589 + CSW01_02815 0.54 +0.8
560,589 + CSW01_02815 0.54 -0.0
560,589 + CSW01_02815 0.54 +1.0
560,589 + CSW01_02815 0.54 +0.9
560,589 + CSW01_02815 0.54 +1.3
560,589 + CSW01_02815 0.54 -0.4
560,589 + CSW01_02815 0.54 +2.1
560,589 + CSW01_02815 0.54 +2.0
560,597 - CSW01_02815 0.54 +0.1
560,597 - CSW01_02815 0.54 +0.3
560,597 - CSW01_02815 0.54 +2.0
560,597 - CSW01_02815 0.54 +1.2
560,597 - CSW01_02815 0.54 -0.6
560,597 - CSW01_02815 0.54 +0.3
560,597 - CSW01_02815 0.54 -1.1
560,607 - CSW01_02815 0.55 -1.0
560,653 + CSW01_02815 0.60 -1.2
560,661 - CSW01_02815 0.60 -0.7
560,724 + CSW01_02815 0.66 +0.1
560,737 + CSW01_02815 0.67 +0.8
560,796 - CSW01_02815 0.73 -4.0
560,810 + CSW01_02815 0.74 +1.4
560,810 + CSW01_02815 0.74 +0.6
560,818 - CSW01_02815 0.75 -1.9
560,956 - CSW01_02815 0.87 -0.4
560,975 + CSW01_02815 0.89 -1.0
560,975 + CSW01_02815 0.89 +1.1

Or see this region's nucleotide sequence