Experiment: ICP1_phage_235.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02715 and CSW01_02720 are separated by 621 nucleotides CSW01_02720 and CSW01_02725 overlap by 4 nucleotides
CSW01_02715: CSW01_02715 - transcriptional antiterminator, at 541,751 to 542,479
_02715
CSW01_02720: CSW01_02720 - AraC family transcriptional regulator, at 543,101 to 543,916
_02720
CSW01_02725: CSW01_02725 - methyl-accepting chemotaxis protein, at 543,913 to 545,793
_02725
Position (kb) 543
544 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 542.125 kb on - strand, within CSW01_02715 at 542.125 kb on - strand, within CSW01_02715 at 542.151 kb on - strand, within CSW01_02715 at 542.151 kb on - strand, within CSW01_02715 at 542.195 kb on + strand, within CSW01_02715 at 542.203 kb on + strand, within CSW01_02715 at 542.203 kb on + strand, within CSW01_02715 at 542.211 kb on - strand, within CSW01_02715 at 542.211 kb on - strand, within CSW01_02715 at 542.235 kb on + strand, within CSW01_02715 at 542.269 kb on - strand, within CSW01_02715 at 542.282 kb on + strand, within CSW01_02715 at 542.282 kb on + strand, within CSW01_02715 at 542.292 kb on + strand, within CSW01_02715 at 542.292 kb on + strand, within CSW01_02715 at 542.292 kb on + strand, within CSW01_02715 at 542.292 kb on + strand, within CSW01_02715 at 542.300 kb on - strand, within CSW01_02715 at 542.300 kb on - strand, within CSW01_02715 at 542.300 kb on - strand, within CSW01_02715 at 542.307 kb on + strand, within CSW01_02715 at 542.315 kb on - strand, within CSW01_02715 at 542.315 kb on - strand, within CSW01_02715 at 542.319 kb on + strand, within CSW01_02715 at 542.327 kb on - strand, within CSW01_02715 at 542.334 kb on - strand, within CSW01_02715 at 542.336 kb on + strand, within CSW01_02715 at 542.336 kb on + strand, within CSW01_02715 at 542.371 kb on + strand, within CSW01_02715 at 542.395 kb on + strand, within CSW01_02715 at 542.411 kb on + strand at 542.411 kb on + strand at 542.412 kb on + strand at 542.412 kb on + strand at 542.425 kb on - strand at 542.432 kb on + strand at 542.450 kb on + strand at 542.457 kb on + strand at 542.457 kb on - strand at 542.472 kb on + strand at 542.480 kb on - strand at 542.513 kb on + strand at 542.513 kb on + strand at 542.521 kb on + strand at 542.536 kb on - strand at 542.579 kb on + strand at 542.580 kb on + strand at 542.580 kb on + strand at 542.581 kb on + strand at 542.585 kb on + strand at 542.585 kb on + strand at 542.585 kb on + strand at 542.585 kb on + strand at 542.588 kb on - strand at 542.588 kb on - strand at 542.588 kb on - strand at 542.593 kb on - strand at 542.617 kb on + strand at 542.632 kb on + strand at 542.775 kb on - strand at 542.793 kb on - strand at 542.989 kb on + strand at 542.997 kb on - strand at 543.011 kb on - strand at 543.046 kb on - strand at 543.057 kb on - strand at 543.057 kb on - strand at 543.104 kb on + strand at 543.104 kb on + strand at 543.104 kb on + strand at 543.104 kb on + strand at 543.104 kb on + strand at 543.226 kb on - strand, within CSW01_02720 at 543.228 kb on - strand, within CSW01_02720 at 543.257 kb on - strand, within CSW01_02720 at 543.351 kb on + strand, within CSW01_02720 at 543.351 kb on + strand, within CSW01_02720 at 543.351 kb on + strand, within CSW01_02720 at 543.364 kb on + strand, within CSW01_02720 at 543.364 kb on + strand, within CSW01_02720 at 543.374 kb on + strand, within CSW01_02720 at 543.379 kb on + strand, within CSW01_02720 at 543.386 kb on + strand, within CSW01_02720 at 543.387 kb on - strand, within CSW01_02720 at 543.392 kb on - strand, within CSW01_02720 at 543.396 kb on - strand, within CSW01_02720 at 543.396 kb on - strand, within CSW01_02720 at 543.565 kb on + strand, within CSW01_02720 at 543.577 kb on + strand, within CSW01_02720 at 543.582 kb on + strand, within CSW01_02720 at 543.586 kb on + strand, within CSW01_02720 at 543.590 kb on - strand, within CSW01_02720 at 543.596 kb on + strand, within CSW01_02720 at 543.596 kb on + strand, within CSW01_02720 at 543.604 kb on - strand, within CSW01_02720 at 543.604 kb on - strand, within CSW01_02720 at 543.604 kb on - strand, within CSW01_02720 at 543.658 kb on + strand, within CSW01_02720 at 543.682 kb on + strand, within CSW01_02720 at 543.700 kb on + strand, within CSW01_02720 at 543.746 kb on - strand, within CSW01_02720 at 543.850 kb on + strand at 543.850 kb on + strand at 543.850 kb on + strand at 543.855 kb on + strand at 543.863 kb on - strand at 543.869 kb on - strand at 543.869 kb on - strand at 543.872 kb on - strand at 543.872 kb on - strand at 543.971 kb on + strand at 543.971 kb on + strand at 543.994 kb on + strand at 543.994 kb on + strand at 543.996 kb on + strand at 543.996 kb on + strand at 543.996 kb on + strand at 543.996 kb on + strand at 543.996 kb on + strand at 543.996 kb on + strand at 543.996 kb on + strand at 543.996 kb on + strand at 543.996 kb on + strand at 543.996 kb on + strand at 543.996 kb on + strand at 543.996 kb on + strand at 543.996 kb on + strand at 543.996 kb on + strand at 543.996 kb on + strand at 543.996 kb on + strand at 544.001 kb on + strand at 544.001 kb on + strand at 544.002 kb on - strand at 544.002 kb on - strand at 544.002 kb on - strand at 544.004 kb on - strand at 544.004 kb on - strand at 544.004 kb on - strand at 544.004 kb on - strand at 544.004 kb on - strand at 544.004 kb on - strand at 544.004 kb on - strand at 544.004 kb on - strand at 544.004 kb on - strand at 544.004 kb on - strand at 544.004 kb on - strand at 544.004 kb on - strand at 544.009 kb on - strand at 544.127 kb on + strand, within CSW01_02725 at 544.145 kb on + strand, within CSW01_02725 at 544.145 kb on + strand, within CSW01_02725 at 544.145 kb on + strand, within CSW01_02725 at 544.153 kb on - strand, within CSW01_02725 at 544.161 kb on - strand, within CSW01_02725 at 544.200 kb on + strand, within CSW01_02725 at 544.212 kb on + strand, within CSW01_02725 at 544.218 kb on - strand, within CSW01_02725 at 544.218 kb on - strand, within CSW01_02725 at 544.249 kb on + strand, within CSW01_02725 at 544.279 kb on + strand, within CSW01_02725 at 544.279 kb on + strand, within CSW01_02725 at 544.286 kb on + strand, within CSW01_02725 at 544.286 kb on + strand, within CSW01_02725 at 544.287 kb on + strand, within CSW01_02725 at 544.287 kb on + strand, within CSW01_02725 at 544.287 kb on + strand, within CSW01_02725 at 544.287 kb on + strand, within CSW01_02725 at 544.287 kb on - strand, within CSW01_02725 at 544.287 kb on - strand, within CSW01_02725 at 544.287 kb on - strand, within CSW01_02725 at 544.287 kb on - strand, within CSW01_02725 at 544.289 kb on + strand, within CSW01_02725 at 544.291 kb on + strand, within CSW01_02725 at 544.295 kb on - strand, within CSW01_02725 at 544.295 kb on - strand, within CSW01_02725 at 544.295 kb on - strand, within CSW01_02725 at 544.295 kb on - strand, within CSW01_02725 at 544.295 kb on - strand, within CSW01_02725 at 544.299 kb on + strand, within CSW01_02725 at 544.299 kb on + strand, within CSW01_02725 at 544.347 kb on + strand, within CSW01_02725 at 544.393 kb on + strand, within CSW01_02725 at 544.421 kb on + strand, within CSW01_02725 at 544.446 kb on + strand, within CSW01_02725 at 544.449 kb on - strand, within CSW01_02725 at 544.454 kb on - strand, within CSW01_02725 at 544.472 kb on + strand, within CSW01_02725 at 544.472 kb on + strand, within CSW01_02725 at 544.472 kb on + strand, within CSW01_02725 at 544.480 kb on - strand, within CSW01_02725 at 544.480 kb on - strand, within CSW01_02725 at 544.480 kb on - strand, within CSW01_02725 at 544.480 kb on - strand, within CSW01_02725 at 544.480 kb on - strand, within CSW01_02725 at 544.480 kb on - strand, within CSW01_02725 at 544.482 kb on + strand, within CSW01_02725 at 544.490 kb on - strand, within CSW01_02725 at 544.500 kb on - strand, within CSW01_02725 at 544.508 kb on + strand, within CSW01_02725 at 544.509 kb on + strand, within CSW01_02725 at 544.517 kb on - strand, within CSW01_02725 at 544.584 kb on + strand, within CSW01_02725 at 544.584 kb on + strand, within CSW01_02725 at 544.584 kb on + strand, within CSW01_02725 at 544.584 kb on + strand, within CSW01_02725 at 544.599 kb on + strand, within CSW01_02725 at 544.599 kb on + strand, within CSW01_02725 at 544.604 kb on + strand, within CSW01_02725 at 544.604 kb on + strand, within CSW01_02725 at 544.606 kb on + strand, within CSW01_02725 at 544.612 kb on - strand, within CSW01_02725 at 544.646 kb on - strand, within CSW01_02725 at 544.646 kb on - strand, within CSW01_02725 at 544.678 kb on - strand, within CSW01_02725 at 544.698 kb on - strand, within CSW01_02725 at 544.779 kb on - strand, within CSW01_02725 at 544.799 kb on + strand, within CSW01_02725 at 544.799 kb on + strand, within CSW01_02725 at 544.799 kb on + strand, within CSW01_02725 at 544.799 kb on + strand, within CSW01_02725 at 544.807 kb on - strand, within CSW01_02725 at 544.807 kb on - strand, within CSW01_02725 at 544.807 kb on - strand, within CSW01_02725 at 544.812 kb on + strand, within CSW01_02725 at 544.819 kb on + strand, within CSW01_02725 at 544.819 kb on + strand, within CSW01_02725 at 544.848 kb on - strand, within CSW01_02725 at 544.869 kb on - strand, within CSW01_02725 at 544.906 kb on + strand, within CSW01_02725
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1 remove 542,125 - CSW01_02715 0.51 -4.3 542,125 - CSW01_02715 0.51 -1.4 542,151 - CSW01_02715 0.55 -1.1 542,151 - CSW01_02715 0.55 +0.6 542,195 + CSW01_02715 0.61 +0.6 542,203 + CSW01_02715 0.62 -0.1 542,203 + CSW01_02715 0.62 -2.6 542,211 - CSW01_02715 0.63 -2.3 542,211 - CSW01_02715 0.63 +1.1 542,235 + CSW01_02715 0.66 -3.3 542,269 - CSW01_02715 0.71 -2.0 542,282 + CSW01_02715 0.73 +0.2 542,282 + CSW01_02715 0.73 +0.3 542,292 + CSW01_02715 0.74 +2.1 542,292 + CSW01_02715 0.74 -1.1 542,292 + CSW01_02715 0.74 -0.7 542,292 + CSW01_02715 0.74 -0.4 542,300 - CSW01_02715 0.75 -1.4 542,300 - CSW01_02715 0.75 -3.1 542,300 - CSW01_02715 0.75 +1.0 542,307 + CSW01_02715 0.76 -2.0 542,315 - CSW01_02715 0.77 -0.6 542,315 - CSW01_02715 0.77 -2.5 542,319 + CSW01_02715 0.78 -1.8 542,327 - CSW01_02715 0.79 -0.2 542,334 - CSW01_02715 0.80 +1.2 542,336 + CSW01_02715 0.80 +1.2 542,336 + CSW01_02715 0.80 -0.5 542,371 + CSW01_02715 0.85 -0.3 542,395 + CSW01_02715 0.88 -0.8 542,411 + -1.3 542,411 + +1.1 542,412 + +0.4 542,412 + -0.3 542,425 - +0.4 542,432 + +1.0 542,450 + +0.8 542,457 + +1.1 542,457 - +0.1 542,472 + +1.1 542,480 - +0.4 542,513 + -0.8 542,513 + +1.0 542,521 + -1.1 542,536 - -0.0 542,579 + +1.1 542,580 + -1.1 542,580 + -0.9 542,581 + -2.9 542,585 + -2.2 542,585 + -1.7 542,585 + +0.9 542,585 + +0.8 542,588 - -1.2 542,588 - -1.9 542,588 - -0.2 542,593 - +0.0 542,617 + +0.4 542,632 + +1.7 542,775 - +0.8 542,793 - -0.3 542,989 + +0.1 542,997 - -1.6 543,011 - -0.2 543,046 - -2.0 543,057 - -3.1 543,057 - -2.6 543,104 + -1.6 543,104 + -1.2 543,104 + +0.4 543,104 + -0.5 543,104 + +0.0 543,226 - CSW01_02720 0.15 +0.2 543,228 - CSW01_02720 0.16 -0.6 543,257 - CSW01_02720 0.19 -0.6 543,351 + CSW01_02720 0.31 +0.6 543,351 + CSW01_02720 0.31 +0.5 543,351 + CSW01_02720 0.31 -3.5 543,364 + CSW01_02720 0.32 +0.1 543,364 + CSW01_02720 0.32 -1.3 543,374 + CSW01_02720 0.33 -0.1 543,379 + CSW01_02720 0.34 +1.3 543,386 + CSW01_02720 0.35 +0.8 543,387 - CSW01_02720 0.35 +0.8 543,392 - CSW01_02720 0.36 +0.2 543,396 - CSW01_02720 0.36 -2.2 543,396 - CSW01_02720 0.36 +1.9 543,565 + CSW01_02720 0.57 +1.0 543,577 + CSW01_02720 0.58 +0.8 543,582 + CSW01_02720 0.59 +0.0 543,586 + CSW01_02720 0.59 +0.9 543,590 - CSW01_02720 0.60 +0.3 543,596 + CSW01_02720 0.61 +2.0 543,596 + CSW01_02720 0.61 +0.9 543,604 - CSW01_02720 0.62 -2.3 543,604 - CSW01_02720 0.62 +1.2 543,604 - CSW01_02720 0.62 +0.9 543,658 + CSW01_02720 0.68 +0.7 543,682 + CSW01_02720 0.71 -0.4 543,700 + CSW01_02720 0.73 +0.6 543,746 - CSW01_02720 0.79 +0.2 543,850 + +1.8 543,850 + +0.6 543,850 + +0.3 543,855 + +1.1 543,863 - -1.1 543,869 - -1.1 543,869 - -2.2 543,872 - -2.0 543,872 - -3.4 543,971 + +1.0 543,971 + -2.9 543,994 + +1.3 543,994 + -0.9 543,996 + +0.1 543,996 + -0.3 543,996 + -0.6 543,996 + +0.7 543,996 + +0.7 543,996 + +0.2 543,996 + -2.3 543,996 + -0.3 543,996 + +0.3 543,996 + +0.5 543,996 + +0.0 543,996 + -0.6 543,996 + -0.3 543,996 + +0.6 543,996 + +0.1 543,996 + +0.3 544,001 + -0.3 544,001 + +0.9 544,002 - -0.2 544,002 - -0.4 544,002 - -0.7 544,004 - -2.4 544,004 - +0.3 544,004 - -0.6 544,004 - +0.5 544,004 - -0.2 544,004 - -2.0 544,004 - -0.8 544,004 - +0.0 544,004 - +0.2 544,004 - -0.5 544,004 - +1.4 544,004 - -0.3 544,009 - -0.6 544,127 + CSW01_02725 0.11 -3.4 544,145 + CSW01_02725 0.12 +0.6 544,145 + CSW01_02725 0.12 +0.7 544,145 + CSW01_02725 0.12 +0.2 544,153 - CSW01_02725 0.13 +0.2 544,161 - CSW01_02725 0.13 -2.4 544,200 + CSW01_02725 0.15 -1.6 544,212 + CSW01_02725 0.16 -0.1 544,218 - CSW01_02725 0.16 +0.3 544,218 - CSW01_02725 0.16 -1.4 544,249 + CSW01_02725 0.18 +0.0 544,279 + CSW01_02725 0.19 -0.9 544,279 + CSW01_02725 0.19 -0.7 544,286 + CSW01_02725 0.20 -1.3 544,286 + CSW01_02725 0.20 +1.3 544,287 + CSW01_02725 0.20 -1.0 544,287 + CSW01_02725 0.20 -1.3 544,287 + CSW01_02725 0.20 +0.4 544,287 + CSW01_02725 0.20 +0.3 544,287 - CSW01_02725 0.20 -0.6 544,287 - CSW01_02725 0.20 -0.1 544,287 - CSW01_02725 0.20 -1.1 544,287 - CSW01_02725 0.20 -0.5 544,289 + CSW01_02725 0.20 -0.7 544,291 + CSW01_02725 0.20 +1.5 544,295 - CSW01_02725 0.20 +1.7 544,295 - CSW01_02725 0.20 -1.4 544,295 - CSW01_02725 0.20 -0.2 544,295 - CSW01_02725 0.20 +0.5 544,295 - CSW01_02725 0.20 -0.7 544,299 + CSW01_02725 0.21 -0.7 544,299 + CSW01_02725 0.21 -1.0 544,347 + CSW01_02725 0.23 -0.7 544,393 + CSW01_02725 0.26 +0.1 544,421 + CSW01_02725 0.27 -0.5 544,446 + CSW01_02725 0.28 -0.8 544,449 - CSW01_02725 0.28 -1.0 544,454 - CSW01_02725 0.29 -3.3 544,472 + CSW01_02725 0.30 -1.4 544,472 + CSW01_02725 0.30 -0.1 544,472 + CSW01_02725 0.30 +0.2 544,480 - CSW01_02725 0.30 -2.2 544,480 - CSW01_02725 0.30 +0.1 544,480 - CSW01_02725 0.30 -0.8 544,480 - CSW01_02725 0.30 +0.5 544,480 - CSW01_02725 0.30 +0.8 544,480 - CSW01_02725 0.30 +0.1 544,482 + CSW01_02725 0.30 -3.7 544,490 - CSW01_02725 0.31 -1.1 544,500 - CSW01_02725 0.31 +0.2 544,508 + CSW01_02725 0.32 +0.1 544,509 + CSW01_02725 0.32 -3.4 544,517 - CSW01_02725 0.32 -1.5 544,584 + CSW01_02725 0.36 -3.3 544,584 + CSW01_02725 0.36 -0.2 544,584 + CSW01_02725 0.36 -0.0 544,584 + CSW01_02725 0.36 -2.5 544,599 + CSW01_02725 0.36 +0.7 544,599 + CSW01_02725 0.36 -0.0 544,604 + CSW01_02725 0.37 +1.2 544,604 + CSW01_02725 0.37 -3.0 544,606 + CSW01_02725 0.37 -0.4 544,612 - CSW01_02725 0.37 -0.2 544,646 - CSW01_02725 0.39 -2.3 544,646 - CSW01_02725 0.39 -0.9 544,678 - CSW01_02725 0.41 -2.1 544,698 - CSW01_02725 0.42 -2.7 544,779 - CSW01_02725 0.46 +0.5 544,799 + CSW01_02725 0.47 +0.4 544,799 + CSW01_02725 0.47 +0.2 544,799 + CSW01_02725 0.47 +0.6 544,799 + CSW01_02725 0.47 +0.1 544,807 - CSW01_02725 0.48 -0.5 544,807 - CSW01_02725 0.48 -1.9 544,807 - CSW01_02725 0.48 -0.1 544,812 + CSW01_02725 0.48 +0.1 544,819 + CSW01_02725 0.48 +0.2 544,819 + CSW01_02725 0.48 -0.1 544,848 - CSW01_02725 0.50 +0.9 544,869 - CSW01_02725 0.51 -1.9 544,906 + CSW01_02725 0.53 -0.4
Or see this region's nucleotide sequence