Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02685

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02675 and CSW01_02680 are separated by 30 nucleotidesCSW01_02680 and CSW01_02685 are separated by 138 nucleotidesCSW01_02685 and CSW01_02690 are separated by 3 nucleotidesCSW01_02690 and CSW01_02695 are separated by 50 nucleotidesCSW01_02695 and CSW01_02700 overlap by 10 nucleotides CSW01_02675: CSW01_02675 - hypothetical protein, at 535,891 to 536,259 _02675 CSW01_02680: CSW01_02680 - WYL domain-containing protein, at 536,290 to 537,024 _02680 CSW01_02685: CSW01_02685 - hypothetical protein, at 537,163 to 537,339 _02685 CSW01_02690: CSW01_02690 - DUF2787 domain-containing protein, at 537,343 to 537,786 _02690 CSW01_02695: CSW01_02695 - DUF2787 domain-containing protein, at 537,837 to 538,280 _02695 CSW01_02700: CSW01_02700 - hypothetical protein, at 538,271 to 538,744 _02700 Position (kb) 537 538Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 536.189 kb on + strand, within CSW01_02675at 536.226 kb on - strandat 536.238 kb on + strandat 536.239 kb on - strandat 536.243 kb on + strandat 536.243 kb on + strandat 536.243 kb on + strandat 536.243 kb on - strandat 536.264 kb on + strandat 536.264 kb on + strandat 536.271 kb on + strandat 536.271 kb on + strandat 536.279 kb on - strandat 536.326 kb on - strandat 536.326 kb on - strandat 536.326 kb on - strandat 536.365 kb on + strand, within CSW01_02680at 536.385 kb on - strand, within CSW01_02680at 536.404 kb on + strand, within CSW01_02680at 536.412 kb on - strand, within CSW01_02680at 536.419 kb on - strand, within CSW01_02680at 536.455 kb on + strand, within CSW01_02680at 536.464 kb on - strand, within CSW01_02680at 536.485 kb on - strand, within CSW01_02680at 536.526 kb on + strand, within CSW01_02680at 536.526 kb on + strand, within CSW01_02680at 536.526 kb on + strand, within CSW01_02680at 536.534 kb on - strand, within CSW01_02680at 536.534 kb on - strand, within CSW01_02680at 536.560 kb on + strand, within CSW01_02680at 536.582 kb on + strand, within CSW01_02680at 536.679 kb on - strand, within CSW01_02680at 536.723 kb on - strand, within CSW01_02680at 536.751 kb on + strand, within CSW01_02680at 536.846 kb on + strand, within CSW01_02680at 536.853 kb on + strand, within CSW01_02680at 536.880 kb on + strand, within CSW01_02680at 536.888 kb on - strand, within CSW01_02680at 536.888 kb on - strand, within CSW01_02680at 536.916 kb on + strand, within CSW01_02680at 536.924 kb on - strand, within CSW01_02680at 536.937 kb on + strand, within CSW01_02680at 536.945 kb on - strand, within CSW01_02680at 536.945 kb on - strand, within CSW01_02680at 536.964 kb on - strandat 536.964 kb on - strandat 536.968 kb on + strandat 536.990 kb on + strandat 537.019 kb on + strandat 537.054 kb on - strandat 537.062 kb on - strandat 537.082 kb on + strandat 537.082 kb on + strandat 537.145 kb on + strandat 537.148 kb on - strandat 537.170 kb on + strandat 537.170 kb on + strandat 537.178 kb on - strandat 537.178 kb on - strandat 537.182 kb on + strand, within CSW01_02685at 537.190 kb on - strand, within CSW01_02685at 537.197 kb on - strand, within CSW01_02685at 537.205 kb on + strand, within CSW01_02685at 537.235 kb on + strand, within CSW01_02685at 537.235 kb on + strand, within CSW01_02685at 537.235 kb on + strand, within CSW01_02685at 537.243 kb on - strand, within CSW01_02685at 537.286 kb on - strand, within CSW01_02685at 537.335 kb on - strandat 537.343 kb on - strandat 537.343 kb on - strandat 537.353 kb on + strandat 537.355 kb on + strandat 537.527 kb on - strand, within CSW01_02690at 537.561 kb on + strand, within CSW01_02690at 537.569 kb on - strand, within CSW01_02690at 537.581 kb on + strand, within CSW01_02690at 537.612 kb on + strand, within CSW01_02690at 537.630 kb on - strand, within CSW01_02690at 537.684 kb on + strand, within CSW01_02690at 537.684 kb on + strand, within CSW01_02690at 537.692 kb on - strand, within CSW01_02690at 537.705 kb on - strand, within CSW01_02690at 537.757 kb on + strandat 537.760 kb on - strandat 537.836 kb on - strandat 537.856 kb on - strandat 537.953 kb on + strand, within CSW01_02695at 537.953 kb on + strand, within CSW01_02695at 537.961 kb on - strand, within CSW01_02695at 537.961 kb on - strand, within CSW01_02695at 538.022 kb on + strand, within CSW01_02695at 538.032 kb on + strand, within CSW01_02695at 538.035 kb on - strand, within CSW01_02695at 538.056 kb on + strand, within CSW01_02695at 538.062 kb on + strand, within CSW01_02695at 538.067 kb on + strand, within CSW01_02695at 538.079 kb on + strand, within CSW01_02695at 538.096 kb on + strand, within CSW01_02695at 538.096 kb on + strand, within CSW01_02695at 538.104 kb on - strand, within CSW01_02695at 538.118 kb on + strand, within CSW01_02695at 538.118 kb on + strand, within CSW01_02695at 538.119 kb on + strand, within CSW01_02695at 538.255 kb on + strandat 538.255 kb on + strandat 538.255 kb on + strandat 538.263 kb on - strandat 538.263 kb on - strandat 538.263 kb on - strandat 538.263 kb on - strandat 538.278 kb on - strandat 538.312 kb on - strandat 538.312 kb on - strandat 538.318 kb on + strandat 538.322 kb on - strand, within CSW01_02700

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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536,189 + CSW01_02675 0.81 +0.9
536,226 - +0.4
536,238 + +0.6
536,239 - -0.6
536,243 + +0.8
536,243 + -0.1
536,243 + +0.7
536,243 - -0.0
536,264 + +1.2
536,264 + +0.3
536,271 + -2.4
536,271 + -2.7
536,279 - +3.0
536,326 - +0.5
536,326 - +0.0
536,326 - +1.0
536,365 + CSW01_02680 0.10 -3.7
536,385 - CSW01_02680 0.13 -1.3
536,404 + CSW01_02680 0.16 -3.2
536,412 - CSW01_02680 0.17 -2.8
536,419 - CSW01_02680 0.18 +0.6
536,455 + CSW01_02680 0.22 +1.8
536,464 - CSW01_02680 0.24 +2.7
536,485 - CSW01_02680 0.27 +1.8
536,526 + CSW01_02680 0.32 +0.8
536,526 + CSW01_02680 0.32 -2.4
536,526 + CSW01_02680 0.32 -0.4
536,534 - CSW01_02680 0.33 -0.3
536,534 - CSW01_02680 0.33 +0.4
536,560 + CSW01_02680 0.37 +0.9
536,582 + CSW01_02680 0.40 -0.8
536,679 - CSW01_02680 0.53 -1.3
536,723 - CSW01_02680 0.59 -1.0
536,751 + CSW01_02680 0.63 -1.8
536,846 + CSW01_02680 0.76 -0.0
536,853 + CSW01_02680 0.77 +1.1
536,880 + CSW01_02680 0.80 -0.1
536,888 - CSW01_02680 0.81 -0.8
536,888 - CSW01_02680 0.81 +1.7
536,916 + CSW01_02680 0.85 +1.0
536,924 - CSW01_02680 0.86 +0.3
536,937 + CSW01_02680 0.88 -0.9
536,945 - CSW01_02680 0.89 -0.4
536,945 - CSW01_02680 0.89 +0.1
536,964 - +2.4
536,964 - -0.3
536,968 + -1.2
536,990 + +1.1
537,019 + +0.7
537,054 - -2.0
537,062 - -3.2
537,082 + +0.2
537,082 + +1.8
537,145 + -1.1
537,148 - +0.6
537,170 + -1.0
537,170 + +0.7
537,178 - +1.0
537,178 - -2.4
537,182 + CSW01_02685 0.11 +1.1
537,190 - CSW01_02685 0.15 +0.9
537,197 - CSW01_02685 0.19 -2.9
537,205 + CSW01_02685 0.24 -2.3
537,235 + CSW01_02685 0.41 -0.3
537,235 + CSW01_02685 0.41 +1.2
537,235 + CSW01_02685 0.41 +1.6
537,243 - CSW01_02685 0.45 -0.7
537,286 - CSW01_02685 0.69 -0.3
537,335 - -1.9
537,343 - -1.3
537,343 - -0.8
537,353 + -0.8
537,355 + -0.1
537,527 - CSW01_02690 0.41 -1.4
537,561 + CSW01_02690 0.49 +2.3
537,569 - CSW01_02690 0.51 -3.4
537,581 + CSW01_02690 0.54 +2.8
537,612 + CSW01_02690 0.61 -0.7
537,630 - CSW01_02690 0.65 -1.2
537,684 + CSW01_02690 0.77 -3.6
537,684 + CSW01_02690 0.77 +0.2
537,692 - CSW01_02690 0.79 +0.4
537,705 - CSW01_02690 0.82 +1.9
537,757 + -1.2
537,760 - -2.2
537,836 - -0.9
537,856 - +0.3
537,953 + CSW01_02695 0.26 +0.1
537,953 + CSW01_02695 0.26 -1.4
537,961 - CSW01_02695 0.28 -0.5
537,961 - CSW01_02695 0.28 -1.0
538,022 + CSW01_02695 0.42 -0.5
538,032 + CSW01_02695 0.44 -0.0
538,035 - CSW01_02695 0.45 +0.9
538,056 + CSW01_02695 0.49 +0.7
538,062 + CSW01_02695 0.51 +0.9
538,067 + CSW01_02695 0.52 -2.2
538,079 + CSW01_02695 0.55 +1.2
538,096 + CSW01_02695 0.58 -0.6
538,096 + CSW01_02695 0.58 -2.6
538,104 - CSW01_02695 0.60 -0.4
538,118 + CSW01_02695 0.63 +0.7
538,118 + CSW01_02695 0.63 +0.1
538,119 + CSW01_02695 0.64 +0.2
538,255 + +1.1
538,255 + +1.1
538,255 + -0.2
538,263 - -2.9
538,263 - +1.2
538,263 - +0.7
538,263 - -1.9
538,278 - +2.0
538,312 - +1.9
538,312 - +1.4
538,318 + -0.2
538,322 - CSW01_02700 0.11 +0.9

Or see this region's nucleotide sequence