Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02675

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02665 and CSW01_02670 are separated by 177 nucleotidesCSW01_02670 and CSW01_02675 are separated by 47 nucleotidesCSW01_02675 and CSW01_02680 are separated by 30 nucleotidesCSW01_02680 and CSW01_02685 are separated by 138 nucleotides CSW01_02665: CSW01_02665 - peptidase M23, at 534,158 to 535,438 _02665 CSW01_02670: CSW01_02670 - hypothetical protein, at 535,616 to 535,843 _02670 CSW01_02675: CSW01_02675 - hypothetical protein, at 535,891 to 536,259 _02675 CSW01_02680: CSW01_02680 - WYL domain-containing protein, at 536,290 to 537,024 _02680 CSW01_02685: CSW01_02685 - hypothetical protein, at 537,163 to 537,339 _02685 Position (kb) 535 536 537Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 534.898 kb on + strand, within CSW01_02665at 534.919 kb on - strand, within CSW01_02665at 534.921 kb on + strand, within CSW01_02665at 534.929 kb on - strand, within CSW01_02665at 534.942 kb on - strand, within CSW01_02665at 534.947 kb on + strand, within CSW01_02665at 534.948 kb on - strand, within CSW01_02665at 534.952 kb on + strand, within CSW01_02665at 534.955 kb on - strand, within CSW01_02665at 534.982 kb on + strand, within CSW01_02665at 534.983 kb on - strand, within CSW01_02665at 535.066 kb on + strand, within CSW01_02665at 535.119 kb on - strand, within CSW01_02665at 535.147 kb on - strand, within CSW01_02665at 535.149 kb on - strand, within CSW01_02665at 535.186 kb on - strand, within CSW01_02665at 535.273 kb on - strand, within CSW01_02665at 535.291 kb on + strand, within CSW01_02665at 535.319 kb on + strandat 535.359 kb on - strandat 535.503 kb on + strandat 535.535 kb on + strandat 535.535 kb on + strandat 535.640 kb on + strand, within CSW01_02670at 535.648 kb on - strand, within CSW01_02670at 535.648 kb on - strand, within CSW01_02670at 535.652 kb on - strand, within CSW01_02670at 535.675 kb on - strand, within CSW01_02670at 535.734 kb on - strand, within CSW01_02670at 535.898 kb on - strandat 535.898 kb on - strandat 535.902 kb on + strandat 535.946 kb on - strand, within CSW01_02675at 535.948 kb on + strand, within CSW01_02675at 535.948 kb on + strand, within CSW01_02675at 535.948 kb on + strand, within CSW01_02675at 535.955 kb on + strand, within CSW01_02675at 535.956 kb on - strand, within CSW01_02675at 535.956 kb on - strand, within CSW01_02675at 535.956 kb on - strand, within CSW01_02675at 535.989 kb on - strand, within CSW01_02675at 536.016 kb on + strand, within CSW01_02675at 536.016 kb on + strand, within CSW01_02675at 536.016 kb on + strand, within CSW01_02675at 536.017 kb on + strand, within CSW01_02675at 536.024 kb on - strand, within CSW01_02675at 536.024 kb on - strand, within CSW01_02675at 536.024 kb on - strand, within CSW01_02675at 536.024 kb on - strand, within CSW01_02675at 536.024 kb on - strand, within CSW01_02675at 536.081 kb on - strand, within CSW01_02675at 536.091 kb on - strand, within CSW01_02675at 536.148 kb on + strand, within CSW01_02675at 536.189 kb on + strand, within CSW01_02675at 536.226 kb on - strandat 536.238 kb on + strandat 536.239 kb on - strandat 536.243 kb on + strandat 536.243 kb on + strandat 536.243 kb on + strandat 536.243 kb on - strandat 536.264 kb on + strandat 536.264 kb on + strandat 536.271 kb on + strandat 536.271 kb on + strandat 536.279 kb on - strandat 536.326 kb on - strandat 536.326 kb on - strandat 536.326 kb on - strandat 536.365 kb on + strand, within CSW01_02680at 536.385 kb on - strand, within CSW01_02680at 536.404 kb on + strand, within CSW01_02680at 536.412 kb on - strand, within CSW01_02680at 536.419 kb on - strand, within CSW01_02680at 536.455 kb on + strand, within CSW01_02680at 536.464 kb on - strand, within CSW01_02680at 536.485 kb on - strand, within CSW01_02680at 536.526 kb on + strand, within CSW01_02680at 536.526 kb on + strand, within CSW01_02680at 536.526 kb on + strand, within CSW01_02680at 536.534 kb on - strand, within CSW01_02680at 536.534 kb on - strand, within CSW01_02680at 536.560 kb on + strand, within CSW01_02680at 536.582 kb on + strand, within CSW01_02680at 536.679 kb on - strand, within CSW01_02680at 536.723 kb on - strand, within CSW01_02680at 536.751 kb on + strand, within CSW01_02680at 536.846 kb on + strand, within CSW01_02680at 536.853 kb on + strand, within CSW01_02680at 536.880 kb on + strand, within CSW01_02680at 536.888 kb on - strand, within CSW01_02680at 536.888 kb on - strand, within CSW01_02680at 536.916 kb on + strand, within CSW01_02680at 536.924 kb on - strand, within CSW01_02680at 536.937 kb on + strand, within CSW01_02680at 536.945 kb on - strand, within CSW01_02680at 536.945 kb on - strand, within CSW01_02680at 536.964 kb on - strandat 536.964 kb on - strandat 536.968 kb on + strandat 536.990 kb on + strandat 537.019 kb on + strandat 537.054 kb on - strandat 537.062 kb on - strandat 537.082 kb on + strandat 537.082 kb on + strandat 537.145 kb on + strandat 537.148 kb on - strandat 537.170 kb on + strandat 537.170 kb on + strandat 537.178 kb on - strandat 537.178 kb on - strandat 537.182 kb on + strand, within CSW01_02685at 537.190 kb on - strand, within CSW01_02685at 537.197 kb on - strand, within CSW01_02685at 537.205 kb on + strand, within CSW01_02685at 537.235 kb on + strand, within CSW01_02685at 537.235 kb on + strand, within CSW01_02685at 537.235 kb on + strand, within CSW01_02685at 537.243 kb on - strand, within CSW01_02685

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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534,898 + CSW01_02665 0.58 +2.4
534,919 - CSW01_02665 0.59 -0.5
534,921 + CSW01_02665 0.60 +2.2
534,929 - CSW01_02665 0.60 -0.1
534,942 - CSW01_02665 0.61 -0.7
534,947 + CSW01_02665 0.62 +1.3
534,948 - CSW01_02665 0.62 -3.0
534,952 + CSW01_02665 0.62 -1.0
534,955 - CSW01_02665 0.62 +0.4
534,982 + CSW01_02665 0.64 +0.5
534,983 - CSW01_02665 0.64 -0.5
535,066 + CSW01_02665 0.71 -1.3
535,119 - CSW01_02665 0.75 -0.8
535,147 - CSW01_02665 0.77 +0.1
535,149 - CSW01_02665 0.77 +0.0
535,186 - CSW01_02665 0.80 +1.2
535,273 - CSW01_02665 0.87 -0.6
535,291 + CSW01_02665 0.88 +0.2
535,319 + -1.5
535,359 - -1.6
535,503 + +0.6
535,535 + +0.8
535,535 + -0.7
535,640 + CSW01_02670 0.11 -1.0
535,648 - CSW01_02670 0.14 +0.2
535,648 - CSW01_02670 0.14 -0.1
535,652 - CSW01_02670 0.16 +1.0
535,675 - CSW01_02670 0.26 +0.9
535,734 - CSW01_02670 0.52 +2.5
535,898 - +2.1
535,898 - +0.9
535,902 + -0.4
535,946 - CSW01_02675 0.15 +1.2
535,948 + CSW01_02675 0.15 +0.7
535,948 + CSW01_02675 0.15 +0.2
535,948 + CSW01_02675 0.15 -2.0
535,955 + CSW01_02675 0.17 -3.4
535,956 - CSW01_02675 0.18 -3.6
535,956 - CSW01_02675 0.18 -4.1
535,956 - CSW01_02675 0.18 +1.0
535,989 - CSW01_02675 0.27 -1.7
536,016 + CSW01_02675 0.34 -0.1
536,016 + CSW01_02675 0.34 -0.6
536,016 + CSW01_02675 0.34 -0.6
536,017 + CSW01_02675 0.34 +0.7
536,024 - CSW01_02675 0.36 +1.0
536,024 - CSW01_02675 0.36 -1.2
536,024 - CSW01_02675 0.36 +0.7
536,024 - CSW01_02675 0.36 -0.6
536,024 - CSW01_02675 0.36 -0.3
536,081 - CSW01_02675 0.51 -2.9
536,091 - CSW01_02675 0.54 -0.3
536,148 + CSW01_02675 0.70 -1.6
536,189 + CSW01_02675 0.81 +0.9
536,226 - +0.4
536,238 + +0.6
536,239 - -0.6
536,243 + +0.8
536,243 + -0.1
536,243 + +0.7
536,243 - -0.0
536,264 + +1.2
536,264 + +0.3
536,271 + -2.4
536,271 + -2.7
536,279 - +3.0
536,326 - +0.5
536,326 - +0.0
536,326 - +1.0
536,365 + CSW01_02680 0.10 -3.7
536,385 - CSW01_02680 0.13 -1.3
536,404 + CSW01_02680 0.16 -3.2
536,412 - CSW01_02680 0.17 -2.8
536,419 - CSW01_02680 0.18 +0.6
536,455 + CSW01_02680 0.22 +1.8
536,464 - CSW01_02680 0.24 +2.7
536,485 - CSW01_02680 0.27 +1.8
536,526 + CSW01_02680 0.32 +0.8
536,526 + CSW01_02680 0.32 -2.4
536,526 + CSW01_02680 0.32 -0.4
536,534 - CSW01_02680 0.33 -0.3
536,534 - CSW01_02680 0.33 +0.4
536,560 + CSW01_02680 0.37 +0.9
536,582 + CSW01_02680 0.40 -0.8
536,679 - CSW01_02680 0.53 -1.3
536,723 - CSW01_02680 0.59 -1.0
536,751 + CSW01_02680 0.63 -1.8
536,846 + CSW01_02680 0.76 -0.0
536,853 + CSW01_02680 0.77 +1.1
536,880 + CSW01_02680 0.80 -0.1
536,888 - CSW01_02680 0.81 -0.8
536,888 - CSW01_02680 0.81 +1.7
536,916 + CSW01_02680 0.85 +1.0
536,924 - CSW01_02680 0.86 +0.3
536,937 + CSW01_02680 0.88 -0.9
536,945 - CSW01_02680 0.89 -0.4
536,945 - CSW01_02680 0.89 +0.1
536,964 - +2.4
536,964 - -0.3
536,968 + -1.2
536,990 + +1.1
537,019 + +0.7
537,054 - -2.0
537,062 - -3.2
537,082 + +0.2
537,082 + +1.8
537,145 + -1.1
537,148 - +0.6
537,170 + -1.0
537,170 + +0.7
537,178 - +1.0
537,178 - -2.4
537,182 + CSW01_02685 0.11 +1.1
537,190 - CSW01_02685 0.15 +0.9
537,197 - CSW01_02685 0.19 -2.9
537,205 + CSW01_02685 0.24 -2.3
537,235 + CSW01_02685 0.41 -0.3
537,235 + CSW01_02685 0.41 +1.2
537,235 + CSW01_02685 0.41 +1.6
537,243 - CSW01_02685 0.45 -0.7

Or see this region's nucleotide sequence