Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02650

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02645 and CSW01_02650 are separated by 502 nucleotidesCSW01_02650 and CSW01_02655 are separated by 388 nucleotides CSW01_02645: CSW01_02645 - IS3 family transposase, at 529,945 to 531,136 _02645 CSW01_02650: CSW01_02650 - IS5/IS1182 family transposase, at 531,639 to 532,549 _02650 CSW01_02655: CSW01_02655 - type II secretion system protein, at 532,938 to 533,462 _02655 Position (kb) 531 532 533Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 530.648 kb on - strand, within CSW01_02645at 530.700 kb on + strand, within CSW01_02645at 530.700 kb on + strand, within CSW01_02645at 530.708 kb on - strand, within CSW01_02645at 530.708 kb on - strand, within CSW01_02645at 530.715 kb on - strand, within CSW01_02645at 530.751 kb on + strand, within CSW01_02645at 530.752 kb on - strand, within CSW01_02645at 530.756 kb on + strand, within CSW01_02645at 530.757 kb on - strand, within CSW01_02645at 530.764 kb on - strand, within CSW01_02645at 530.856 kb on - strand, within CSW01_02645at 530.938 kb on + strand, within CSW01_02645at 530.938 kb on + strand, within CSW01_02645at 530.951 kb on - strand, within CSW01_02645at 530.951 kb on - strand, within CSW01_02645at 531.117 kb on + strandat 531.130 kb on - strandat 531.173 kb on + strandat 531.173 kb on + strandat 531.173 kb on + strandat 531.173 kb on + strandat 531.173 kb on + strandat 531.173 kb on + strandat 531.173 kb on + strandat 531.181 kb on - strandat 531.181 kb on - strandat 531.181 kb on - strandat 531.283 kb on + strandat 531.283 kb on + strandat 531.288 kb on + strandat 531.296 kb on - strandat 531.296 kb on - strandat 531.296 kb on - strandat 531.305 kb on + strandat 531.305 kb on + strandat 531.310 kb on + strandat 531.345 kb on + strandat 531.356 kb on + strandat 531.385 kb on - strandat 531.387 kb on + strandat 531.387 kb on - strandat 531.437 kb on - strandat 531.485 kb on + strandat 531.551 kb on + strandat 531.557 kb on + strandat 531.565 kb on - strandat 531.620 kb on + strandat 531.620 kb on + strandat 531.620 kb on + strandat 531.620 kb on + strandat 531.623 kb on - strandat 531.628 kb on - strandat 531.663 kb on - strandat 531.663 kb on - strandat 531.666 kb on + strandat 531.691 kb on + strandat 531.774 kb on + strand, within CSW01_02650at 531.774 kb on + strand, within CSW01_02650at 531.774 kb on + strand, within CSW01_02650at 531.782 kb on - strand, within CSW01_02650at 531.926 kb on + strand, within CSW01_02650at 532.037 kb on + strand, within CSW01_02650at 532.037 kb on + strand, within CSW01_02650at 532.063 kb on - strand, within CSW01_02650at 532.095 kb on + strand, within CSW01_02650at 532.100 kb on + strand, within CSW01_02650at 532.134 kb on + strand, within CSW01_02650at 532.179 kb on - strand, within CSW01_02650at 532.184 kb on + strand, within CSW01_02650at 532.205 kb on - strand, within CSW01_02650at 532.212 kb on - strand, within CSW01_02650at 532.220 kb on - strand, within CSW01_02650at 532.269 kb on + strand, within CSW01_02650at 532.271 kb on + strand, within CSW01_02650at 532.271 kb on + strand, within CSW01_02650at 532.279 kb on - strand, within CSW01_02650at 532.279 kb on - strand, within CSW01_02650at 532.284 kb on - strand, within CSW01_02650at 532.303 kb on - strand, within CSW01_02650at 532.321 kb on + strand, within CSW01_02650at 532.321 kb on + strand, within CSW01_02650at 532.321 kb on + strand, within CSW01_02650at 532.321 kb on + strand, within CSW01_02650at 532.328 kb on + strand, within CSW01_02650at 532.357 kb on + strand, within CSW01_02650at 532.383 kb on - strand, within CSW01_02650at 532.385 kb on - strand, within CSW01_02650at 532.455 kb on - strand, within CSW01_02650at 532.521 kb on - strandat 532.551 kb on + strandat 532.552 kb on + strandat 532.559 kb on + strandat 532.559 kb on + strandat 532.625 kb on + strandat 532.633 kb on - strandat 532.641 kb on + strandat 532.746 kb on + strandat 532.748 kb on - strandat 532.761 kb on + strandat 532.769 kb on + strandat 532.769 kb on + strandat 532.777 kb on - strandat 532.777 kb on - strandat 532.777 kb on - strandat 532.918 kb on + strandat 532.970 kb on - strandat 533.109 kb on - strand, within CSW01_02655at 533.143 kb on + strand, within CSW01_02655at 533.162 kb on - strand, within CSW01_02655at 533.163 kb on - strand, within CSW01_02655at 533.163 kb on - strand, within CSW01_02655at 533.248 kb on + strand, within CSW01_02655at 533.255 kb on - strand, within CSW01_02655at 533.256 kb on - strand, within CSW01_02655at 533.292 kb on + strand, within CSW01_02655at 533.292 kb on + strand, within CSW01_02655at 533.292 kb on + strand, within CSW01_02655at 533.292 kb on + strand, within CSW01_02655at 533.292 kb on + strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.329 kb on + strand, within CSW01_02655at 533.329 kb on + strand, within CSW01_02655at 533.337 kb on - strand, within CSW01_02655at 533.341 kb on + strand, within CSW01_02655at 533.350 kb on + strand, within CSW01_02655at 533.389 kb on - strand, within CSW01_02655at 533.415 kb on - strandat 533.430 kb on - strandat 533.446 kb on - strandat 533.507 kb on + strandat 533.515 kb on - strandat 533.538 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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530,648 - CSW01_02645 0.59 -2.6
530,700 + CSW01_02645 0.63 -0.9
530,700 + CSW01_02645 0.63 +0.9
530,708 - CSW01_02645 0.64 -3.0
530,708 - CSW01_02645 0.64 +0.0
530,715 - CSW01_02645 0.65 -0.7
530,751 + CSW01_02645 0.68 +0.1
530,752 - CSW01_02645 0.68 -2.1
530,756 + CSW01_02645 0.68 -2.3
530,757 - CSW01_02645 0.68 +0.6
530,764 - CSW01_02645 0.69 -0.5
530,856 - CSW01_02645 0.76 -1.3
530,938 + CSW01_02645 0.83 -1.7
530,938 + CSW01_02645 0.83 -1.8
530,951 - CSW01_02645 0.84 +0.8
530,951 - CSW01_02645 0.84 +0.5
531,117 + -2.4
531,130 - +0.2
531,173 + -0.8
531,173 + +0.2
531,173 + -2.1
531,173 + -0.6
531,173 + +0.6
531,173 + -1.7
531,173 + +0.2
531,181 - -4.1
531,181 - +0.4
531,181 - -1.0
531,283 + +0.5
531,283 + -1.2
531,288 + +0.6
531,296 - +0.5
531,296 - -0.3
531,296 - -0.6
531,305 + +0.3
531,305 + -0.6
531,310 + +1.2
531,345 + -1.5
531,356 + -0.9
531,385 - +0.5
531,387 + +1.0
531,387 - -2.6
531,437 - +0.2
531,485 + +0.4
531,551 + -3.5
531,557 + +0.7
531,565 - +0.4
531,620 + -0.2
531,620 + +1.1
531,620 + -4.1
531,620 + +1.6
531,623 - +1.0
531,628 - +0.1
531,663 - -2.1
531,663 - -0.4
531,666 + +1.3
531,691 + -2.6
531,774 + CSW01_02650 0.15 +0.0
531,774 + CSW01_02650 0.15 -2.4
531,774 + CSW01_02650 0.15 -2.2
531,782 - CSW01_02650 0.16 +2.1
531,926 + CSW01_02650 0.32 -2.5
532,037 + CSW01_02650 0.44 -1.4
532,037 + CSW01_02650 0.44 +0.6
532,063 - CSW01_02650 0.47 +0.0
532,095 + CSW01_02650 0.50 -1.9
532,100 + CSW01_02650 0.51 -1.9
532,134 + CSW01_02650 0.54 -0.1
532,179 - CSW01_02650 0.59 +0.7
532,184 + CSW01_02650 0.60 -0.3
532,205 - CSW01_02650 0.62 -1.0
532,212 - CSW01_02650 0.63 +0.2
532,220 - CSW01_02650 0.64 +0.1
532,269 + CSW01_02650 0.69 -0.8
532,271 + CSW01_02650 0.69 -1.0
532,271 + CSW01_02650 0.69 -3.0
532,279 - CSW01_02650 0.70 -0.3
532,279 - CSW01_02650 0.70 -1.3
532,284 - CSW01_02650 0.71 +0.2
532,303 - CSW01_02650 0.73 -1.5
532,321 + CSW01_02650 0.75 -0.1
532,321 + CSW01_02650 0.75 -0.0
532,321 + CSW01_02650 0.75 +1.8
532,321 + CSW01_02650 0.75 +0.5
532,328 + CSW01_02650 0.76 -0.6
532,357 + CSW01_02650 0.79 +1.0
532,383 - CSW01_02650 0.82 -0.3
532,385 - CSW01_02650 0.82 +0.1
532,455 - CSW01_02650 0.90 +0.8
532,521 - +0.7
532,551 + +0.1
532,552 + +0.0
532,559 + -2.0
532,559 + +0.4
532,625 + +0.7
532,633 - -1.3
532,641 + +0.8
532,746 + -1.7
532,748 - -0.5
532,761 + +0.8
532,769 + +0.3
532,769 + -1.1
532,777 - -0.8
532,777 - -0.0
532,777 - +1.6
532,918 + +0.1
532,970 - -2.9
533,109 - CSW01_02655 0.33 -3.0
533,143 + CSW01_02655 0.39 +0.2
533,162 - CSW01_02655 0.43 -0.3
533,163 - CSW01_02655 0.43 -1.1
533,163 - CSW01_02655 0.43 -0.3
533,248 + CSW01_02655 0.59 -2.1
533,255 - CSW01_02655 0.60 -0.5
533,256 - CSW01_02655 0.61 -0.0
533,292 + CSW01_02655 0.67 +0.8
533,292 + CSW01_02655 0.67 +0.1
533,292 + CSW01_02655 0.67 -0.8
533,292 + CSW01_02655 0.67 -0.4
533,292 + CSW01_02655 0.67 -0.8
533,300 - CSW01_02655 0.69 +0.6
533,300 - CSW01_02655 0.69 -0.1
533,300 - CSW01_02655 0.69 +0.0
533,300 - CSW01_02655 0.69 -0.1
533,300 - CSW01_02655 0.69 +0.1
533,300 - CSW01_02655 0.69 +1.2
533,300 - CSW01_02655 0.69 +1.5
533,300 - CSW01_02655 0.69 +0.5
533,300 - CSW01_02655 0.69 +0.3
533,329 + CSW01_02655 0.74 +1.9
533,329 + CSW01_02655 0.74 -3.7
533,337 - CSW01_02655 0.76 -1.6
533,341 + CSW01_02655 0.77 +1.2
533,350 + CSW01_02655 0.78 -2.3
533,389 - CSW01_02655 0.86 +0.6
533,415 - +0.2
533,430 - +1.1
533,446 - -3.2
533,507 + +0.0
533,515 - +1.8
533,538 - -3.1

Or see this region's nucleotide sequence