Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02515

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02510 and CSW01_02515 are separated by 277 nucleotidesCSW01_02515 and CSW01_02520 are separated by 71 nucleotides CSW01_02510: CSW01_02510 - S-adenosylmethionine synthase, at 498,910 to 500,067 _02510 CSW01_02515: CSW01_02515 - transketolase, at 500,345 to 502,429 _02515 CSW01_02520: CSW01_02520 - iron-regulated virulence regulatory protein IrgB, at 502,501 to 503,397 _02520 Position (kb) 500 501 502 503Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 500.336 kb on - strandat 500.416 kb on + strandat 500.416 kb on + strandat 500.436 kb on - strandat 500.455 kb on - strandat 500.462 kb on + strandat 500.617 kb on + strand, within CSW01_02515at 500.641 kb on + strand, within CSW01_02515at 500.675 kb on - strand, within CSW01_02515at 500.675 kb on - strand, within CSW01_02515at 500.675 kb on - strand, within CSW01_02515at 500.675 kb on - strand, within CSW01_02515at 500.675 kb on - strand, within CSW01_02515at 500.675 kb on - strand, within CSW01_02515at 500.675 kb on - strand, within CSW01_02515at 500.675 kb on - strand, within CSW01_02515at 500.675 kb on - strand, within CSW01_02515at 500.675 kb on - strand, within CSW01_02515at 500.713 kb on + strand, within CSW01_02515at 500.730 kb on + strand, within CSW01_02515at 500.735 kb on + strand, within CSW01_02515at 500.735 kb on + strand, within CSW01_02515at 500.735 kb on + strand, within CSW01_02515at 500.742 kb on + strand, within CSW01_02515at 500.742 kb on + strand, within CSW01_02515at 500.742 kb on + strand, within CSW01_02515at 500.789 kb on - strand, within CSW01_02515at 500.794 kb on - strand, within CSW01_02515at 500.828 kb on - strand, within CSW01_02515at 500.870 kb on - strand, within CSW01_02515at 500.882 kb on + strand, within CSW01_02515at 500.884 kb on + strand, within CSW01_02515at 500.946 kb on + strand, within CSW01_02515at 500.946 kb on + strand, within CSW01_02515at 500.946 kb on + strand, within CSW01_02515at 500.946 kb on + strand, within CSW01_02515at 500.946 kb on + strand, within CSW01_02515at 500.946 kb on + strand, within CSW01_02515at 500.954 kb on - strand, within CSW01_02515at 500.954 kb on - strand, within CSW01_02515at 500.954 kb on - strand, within CSW01_02515at 500.954 kb on - strand, within CSW01_02515at 500.954 kb on - strand, within CSW01_02515at 500.954 kb on - strand, within CSW01_02515at 501.016 kb on - strand, within CSW01_02515at 501.042 kb on + strand, within CSW01_02515at 501.042 kb on + strand, within CSW01_02515at 501.057 kb on + strand, within CSW01_02515at 501.108 kb on - strand, within CSW01_02515at 501.205 kb on - strand, within CSW01_02515at 501.221 kb on + strand, within CSW01_02515at 501.221 kb on + strand, within CSW01_02515at 501.221 kb on + strand, within CSW01_02515at 501.221 kb on + strand, within CSW01_02515at 501.221 kb on + strand, within CSW01_02515at 501.221 kb on + strand, within CSW01_02515at 501.221 kb on + strand, within CSW01_02515at 501.226 kb on + strand, within CSW01_02515at 501.229 kb on - strand, within CSW01_02515at 501.229 kb on - strand, within CSW01_02515at 501.238 kb on + strand, within CSW01_02515at 501.238 kb on + strand, within CSW01_02515at 501.246 kb on - strand, within CSW01_02515at 501.246 kb on - strand, within CSW01_02515at 501.306 kb on - strand, within CSW01_02515at 501.306 kb on - strand, within CSW01_02515at 501.306 kb on - strand, within CSW01_02515at 501.306 kb on - strand, within CSW01_02515at 501.306 kb on - strand, within CSW01_02515at 501.306 kb on - strand, within CSW01_02515at 501.306 kb on - strand, within CSW01_02515at 501.306 kb on - strand, within CSW01_02515at 501.306 kb on - strand, within CSW01_02515at 501.306 kb on - strand, within CSW01_02515at 501.306 kb on - strand, within CSW01_02515at 501.306 kb on - strand, within CSW01_02515at 501.306 kb on - strand, within CSW01_02515at 501.306 kb on - strand, within CSW01_02515at 501.306 kb on - strand, within CSW01_02515at 501.306 kb on - strand, within CSW01_02515at 501.306 kb on - strand, within CSW01_02515at 501.306 kb on - strand, within CSW01_02515at 501.308 kb on - strand, within CSW01_02515at 501.387 kb on - strand, within CSW01_02515at 501.830 kb on - strand, within CSW01_02515at 501.903 kb on + strand, within CSW01_02515at 501.958 kb on + strand, within CSW01_02515at 501.999 kb on + strand, within CSW01_02515at 502.071 kb on + strand, within CSW01_02515at 502.104 kb on - strand, within CSW01_02515at 502.115 kb on - strand, within CSW01_02515at 502.144 kb on + strand, within CSW01_02515at 502.144 kb on + strand, within CSW01_02515at 502.156 kb on + strand, within CSW01_02515at 502.325 kb on + strandat 502.528 kb on + strandat 502.554 kb on + strandat 502.571 kb on - strandat 502.578 kb on + strandat 502.586 kb on - strandat 502.586 kb on - strandat 502.586 kb on - strandat 502.586 kb on - strandat 502.629 kb on + strand, within CSW01_02520at 502.629 kb on + strand, within CSW01_02520at 502.637 kb on - strand, within CSW01_02520at 502.637 kb on - strand, within CSW01_02520at 502.647 kb on - strand, within CSW01_02520at 502.671 kb on + strand, within CSW01_02520at 502.686 kb on + strand, within CSW01_02520at 502.699 kb on + strand, within CSW01_02520at 502.700 kb on + strand, within CSW01_02520at 502.731 kb on + strand, within CSW01_02520at 502.751 kb on - strand, within CSW01_02520at 502.753 kb on + strand, within CSW01_02520at 502.757 kb on + strand, within CSW01_02520at 502.758 kb on - strand, within CSW01_02520at 502.775 kb on + strand, within CSW01_02520at 502.775 kb on - strand, within CSW01_02520at 502.859 kb on - strand, within CSW01_02520at 502.900 kb on + strand, within CSW01_02520at 502.924 kb on + strand, within CSW01_02520at 502.932 kb on - strand, within CSW01_02520at 502.932 kb on - strand, within CSW01_02520at 502.953 kb on - strand, within CSW01_02520at 502.993 kb on + strand, within CSW01_02520at 503.001 kb on - strand, within CSW01_02520at 503.052 kb on + strand, within CSW01_02520at 503.052 kb on + strand, within CSW01_02520at 503.060 kb on - strand, within CSW01_02520at 503.067 kb on + strand, within CSW01_02520at 503.067 kb on + strand, within CSW01_02520at 503.067 kb on + strand, within CSW01_02520at 503.075 kb on - strand, within CSW01_02520at 503.075 kb on - strand, within CSW01_02520at 503.075 kb on - strand, within CSW01_02520at 503.075 kb on - strand, within CSW01_02520at 503.187 kb on + strand, within CSW01_02520at 503.187 kb on + strand, within CSW01_02520at 503.187 kb on + strand, within CSW01_02520at 503.224 kb on - strand, within CSW01_02520at 503.257 kb on + strand, within CSW01_02520at 503.257 kb on + strand, within CSW01_02520at 503.265 kb on - strand, within CSW01_02520at 503.301 kb on + strand, within CSW01_02520at 503.301 kb on + strand, within CSW01_02520at 503.305 kb on + strand, within CSW01_02520at 503.306 kb on + strand, within CSW01_02520at 503.306 kb on + strand, within CSW01_02520at 503.306 kb on + strand, within CSW01_02520at 503.306 kb on + strand, within CSW01_02520at 503.306 kb on + strand, within CSW01_02520at 503.306 kb on + strand, within CSW01_02520at 503.306 kb on + strand, within CSW01_02520at 503.306 kb on + strand, within CSW01_02520at 503.314 kb on - strandat 503.314 kb on - strandat 503.314 kb on - strandat 503.314 kb on - strandat 503.314 kb on - strandat 503.314 kb on - strandat 503.314 kb on - strandat 503.316 kb on + strandat 503.316 kb on + strandat 503.324 kb on - strandat 503.352 kb on - strandat 503.372 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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500,336 - +0.3
500,416 + -2.5
500,416 + -1.4
500,436 - -0.4
500,455 - +0.4
500,462 + -2.3
500,617 + CSW01_02515 0.13 +0.6
500,641 + CSW01_02515 0.14 -0.1
500,675 - CSW01_02515 0.16 -2.2
500,675 - CSW01_02515 0.16 -0.0
500,675 - CSW01_02515 0.16 +0.3
500,675 - CSW01_02515 0.16 -1.5
500,675 - CSW01_02515 0.16 -0.4
500,675 - CSW01_02515 0.16 +1.0
500,675 - CSW01_02515 0.16 +1.4
500,675 - CSW01_02515 0.16 +0.1
500,675 - CSW01_02515 0.16 -3.7
500,675 - CSW01_02515 0.16 -0.0
500,713 + CSW01_02515 0.18 +0.6
500,730 + CSW01_02515 0.18 -1.1
500,735 + CSW01_02515 0.19 +0.3
500,735 + CSW01_02515 0.19 -1.9
500,735 + CSW01_02515 0.19 +1.1
500,742 + CSW01_02515 0.19 +0.0
500,742 + CSW01_02515 0.19 +1.1
500,742 + CSW01_02515 0.19 -3.3
500,789 - CSW01_02515 0.21 +1.3
500,794 - CSW01_02515 0.22 +2.1
500,828 - CSW01_02515 0.23 +1.4
500,870 - CSW01_02515 0.25 -2.9
500,882 + CSW01_02515 0.26 +1.1
500,884 + CSW01_02515 0.26 +1.1
500,946 + CSW01_02515 0.29 +1.6
500,946 + CSW01_02515 0.29 -0.1
500,946 + CSW01_02515 0.29 -0.6
500,946 + CSW01_02515 0.29 +0.3
500,946 + CSW01_02515 0.29 +0.5
500,946 + CSW01_02515 0.29 +0.1
500,954 - CSW01_02515 0.29 -0.4
500,954 - CSW01_02515 0.29 +1.0
500,954 - CSW01_02515 0.29 -2.3
500,954 - CSW01_02515 0.29 -1.8
500,954 - CSW01_02515 0.29 -0.9
500,954 - CSW01_02515 0.29 +0.2
501,016 - CSW01_02515 0.32 -1.7
501,042 + CSW01_02515 0.33 +0.4
501,042 + CSW01_02515 0.33 +2.5
501,057 + CSW01_02515 0.34 +0.2
501,108 - CSW01_02515 0.37 +1.3
501,205 - CSW01_02515 0.41 -2.9
501,221 + CSW01_02515 0.42 -1.2
501,221 + CSW01_02515 0.42 +0.5
501,221 + CSW01_02515 0.42 +0.9
501,221 + CSW01_02515 0.42 +0.7
501,221 + CSW01_02515 0.42 -3.0
501,221 + CSW01_02515 0.42 -1.5
501,221 + CSW01_02515 0.42 +0.1
501,226 + CSW01_02515 0.42 +0.5
501,229 - CSW01_02515 0.42 +1.4
501,229 - CSW01_02515 0.42 +0.6
501,238 + CSW01_02515 0.43 -2.4
501,238 + CSW01_02515 0.43 +0.2
501,246 - CSW01_02515 0.43 +1.1
501,246 - CSW01_02515 0.43 +0.6
501,306 - CSW01_02515 0.46 -0.6
501,306 - CSW01_02515 0.46 -1.5
501,306 - CSW01_02515 0.46 +1.2
501,306 - CSW01_02515 0.46 +0.5
501,306 - CSW01_02515 0.46 +2.6
501,306 - CSW01_02515 0.46 -0.7
501,306 - CSW01_02515 0.46 -1.3
501,306 - CSW01_02515 0.46 -3.8
501,306 - CSW01_02515 0.46 -0.5
501,306 - CSW01_02515 0.46 -3.5
501,306 - CSW01_02515 0.46 +0.9
501,306 - CSW01_02515 0.46 -1.8
501,306 - CSW01_02515 0.46 -3.3
501,306 - CSW01_02515 0.46 +3.1
501,306 - CSW01_02515 0.46 +0.8
501,306 - CSW01_02515 0.46 -1.8
501,306 - CSW01_02515 0.46 -0.5
501,306 - CSW01_02515 0.46 +0.6
501,308 - CSW01_02515 0.46 +0.4
501,387 - CSW01_02515 0.50 +0.3
501,830 - CSW01_02515 0.71 -0.6
501,903 + CSW01_02515 0.75 +1.0
501,958 + CSW01_02515 0.77 -1.1
501,999 + CSW01_02515 0.79 -1.8
502,071 + CSW01_02515 0.83 -2.5
502,104 - CSW01_02515 0.84 +0.1
502,115 - CSW01_02515 0.85 +0.3
502,144 + CSW01_02515 0.86 +0.8
502,144 + CSW01_02515 0.86 -0.7
502,156 + CSW01_02515 0.87 +0.5
502,325 + -1.0
502,528 + -1.8
502,554 + +1.9
502,571 - -0.7
502,578 + -1.7
502,586 - -0.1
502,586 - +0.9
502,586 - +0.5
502,586 - +0.0
502,629 + CSW01_02520 0.14 -0.8
502,629 + CSW01_02520 0.14 +0.7
502,637 - CSW01_02520 0.15 +1.1
502,637 - CSW01_02520 0.15 -1.5
502,647 - CSW01_02520 0.16 +3.7
502,671 + CSW01_02520 0.19 -0.6
502,686 + CSW01_02520 0.21 -1.9
502,699 + CSW01_02520 0.22 -2.4
502,700 + CSW01_02520 0.22 -0.7
502,731 + CSW01_02520 0.26 +1.1
502,751 - CSW01_02520 0.28 +1.0
502,753 + CSW01_02520 0.28 +0.4
502,757 + CSW01_02520 0.29 -0.8
502,758 - CSW01_02520 0.29 +1.2
502,775 + CSW01_02520 0.31 +1.2
502,775 - CSW01_02520 0.31 -2.8
502,859 - CSW01_02520 0.40 -1.2
502,900 + CSW01_02520 0.44 -2.2
502,924 + CSW01_02520 0.47 +0.1
502,932 - CSW01_02520 0.48 -2.3
502,932 - CSW01_02520 0.48 -0.1
502,953 - CSW01_02520 0.50 +0.8
502,993 + CSW01_02520 0.55 -1.5
503,001 - CSW01_02520 0.56 -1.8
503,052 + CSW01_02520 0.61 +1.9
503,052 + CSW01_02520 0.61 -3.5
503,060 - CSW01_02520 0.62 +1.4
503,067 + CSW01_02520 0.63 +0.2
503,067 + CSW01_02520 0.63 -0.3
503,067 + CSW01_02520 0.63 +1.2
503,075 - CSW01_02520 0.64 +1.3
503,075 - CSW01_02520 0.64 +2.5
503,075 - CSW01_02520 0.64 +0.0
503,075 - CSW01_02520 0.64 +1.2
503,187 + CSW01_02520 0.76 -2.5
503,187 + CSW01_02520 0.76 -2.3
503,187 + CSW01_02520 0.76 +1.2
503,224 - CSW01_02520 0.81 +0.2
503,257 + CSW01_02520 0.84 -0.6
503,257 + CSW01_02520 0.84 +0.4
503,265 - CSW01_02520 0.85 +2.4
503,301 + CSW01_02520 0.89 +0.1
503,301 + CSW01_02520 0.89 +0.8
503,305 + CSW01_02520 0.90 +1.5
503,306 + CSW01_02520 0.90 +0.3
503,306 + CSW01_02520 0.90 +0.6
503,306 + CSW01_02520 0.90 -3.5
503,306 + CSW01_02520 0.90 +0.1
503,306 + CSW01_02520 0.90 +1.1
503,306 + CSW01_02520 0.90 -0.0
503,306 + CSW01_02520 0.90 -1.5
503,306 + CSW01_02520 0.90 -1.7
503,314 - -4.0
503,314 - +1.9
503,314 - +1.0
503,314 - -2.8
503,314 - +0.2
503,314 - +0.7
503,314 - -0.9
503,316 + +0.5
503,316 + +1.7
503,324 - +1.2
503,352 - +0.5
503,372 + +0.1

Or see this region's nucleotide sequence