Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02505

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02495 and CSW01_02500 are separated by 137 nucleotidesCSW01_02500 and CSW01_02505 are separated by 127 nucleotidesCSW01_02505 and CSW01_02510 are separated by 121 nucleotides CSW01_02495: CSW01_02495 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 496,608 to 497,339 _02495 CSW01_02500: CSW01_02500 - deoxyribonuclease, at 497,477 to 498,172 _02500 CSW01_02505: CSW01_02505 - SprT family protein, at 498,300 to 498,788 _02505 CSW01_02510: CSW01_02510 - S-adenosylmethionine synthase, at 498,910 to 500,067 _02510 Position (kb) 498 499Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 497.373 kb on - strandat 497.373 kb on - strandat 497.388 kb on + strandat 497.396 kb on - strandat 497.396 kb on - strandat 497.402 kb on - strandat 497.407 kb on + strandat 497.524 kb on - strandat 497.524 kb on - strandat 497.526 kb on + strandat 497.608 kb on - strand, within CSW01_02500at 497.617 kb on + strand, within CSW01_02500at 497.627 kb on + strand, within CSW01_02500at 497.637 kb on + strand, within CSW01_02500at 497.637 kb on + strand, within CSW01_02500at 497.637 kb on + strand, within CSW01_02500at 497.645 kb on - strand, within CSW01_02500at 497.645 kb on - strand, within CSW01_02500at 497.645 kb on - strand, within CSW01_02500at 497.659 kb on + strand, within CSW01_02500at 497.694 kb on - strand, within CSW01_02500at 497.728 kb on + strand, within CSW01_02500at 497.736 kb on - strand, within CSW01_02500at 497.736 kb on - strand, within CSW01_02500at 497.809 kb on + strand, within CSW01_02500at 497.827 kb on - strand, within CSW01_02500at 497.827 kb on - strand, within CSW01_02500at 497.840 kb on + strand, within CSW01_02500at 497.845 kb on + strand, within CSW01_02500at 497.850 kb on + strand, within CSW01_02500at 497.858 kb on - strand, within CSW01_02500at 497.919 kb on + strand, within CSW01_02500at 497.926 kb on - strand, within CSW01_02500at 497.927 kb on - strand, within CSW01_02500at 497.974 kb on + strand, within CSW01_02500at 497.982 kb on - strand, within CSW01_02500at 498.084 kb on + strand, within CSW01_02500at 498.119 kb on + strandat 498.119 kb on + strandat 498.127 kb on - strandat 498.203 kb on + strandat 498.211 kb on - strandat 498.211 kb on - strandat 498.257 kb on + strandat 498.290 kb on - strandat 498.305 kb on - strandat 498.339 kb on + strandat 498.360 kb on - strand, within CSW01_02505at 498.364 kb on + strand, within CSW01_02505at 498.385 kb on - strand, within CSW01_02505at 498.424 kb on + strand, within CSW01_02505at 498.429 kb on + strand, within CSW01_02505at 498.432 kb on - strand, within CSW01_02505at 498.432 kb on - strand, within CSW01_02505at 498.432 kb on - strand, within CSW01_02505at 498.434 kb on + strand, within CSW01_02505at 498.434 kb on + strand, within CSW01_02505at 498.434 kb on + strand, within CSW01_02505at 498.434 kb on + strand, within CSW01_02505at 498.434 kb on + strand, within CSW01_02505at 498.434 kb on + strand, within CSW01_02505at 498.442 kb on - strand, within CSW01_02505at 498.442 kb on - strand, within CSW01_02505at 498.442 kb on - strand, within CSW01_02505at 498.442 kb on - strand, within CSW01_02505at 498.442 kb on - strand, within CSW01_02505at 498.442 kb on - strand, within CSW01_02505at 498.485 kb on - strand, within CSW01_02505at 498.524 kb on - strand, within CSW01_02505at 498.646 kb on + strand, within CSW01_02505at 498.698 kb on + strand, within CSW01_02505at 498.698 kb on + strand, within CSW01_02505at 498.698 kb on + strand, within CSW01_02505at 498.698 kb on + strand, within CSW01_02505at 498.698 kb on + strand, within CSW01_02505at 498.698 kb on + strand, within CSW01_02505at 498.698 kb on + strand, within CSW01_02505at 498.698 kb on + strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.711 kb on + strand, within CSW01_02505at 498.711 kb on + strand, within CSW01_02505at 498.758 kb on + strandat 498.758 kb on + strandat 498.760 kb on + strandat 498.760 kb on + strandat 498.768 kb on - strandat 498.768 kb on - strandat 498.776 kb on - strandat 498.855 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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497,373 - -0.9
497,373 - +0.1
497,388 + -2.6
497,396 - -0.1
497,396 - +0.6
497,402 - -3.3
497,407 + -1.6
497,524 - -3.5
497,524 - +0.4
497,526 + +0.3
497,608 - CSW01_02500 0.19 +2.0
497,617 + CSW01_02500 0.20 +0.4
497,627 + CSW01_02500 0.22 +0.0
497,637 + CSW01_02500 0.23 -2.0
497,637 + CSW01_02500 0.23 -2.3
497,637 + CSW01_02500 0.23 +1.3
497,645 - CSW01_02500 0.24 +0.5
497,645 - CSW01_02500 0.24 -1.3
497,645 - CSW01_02500 0.24 +0.0
497,659 + CSW01_02500 0.26 -2.6
497,694 - CSW01_02500 0.31 +0.9
497,728 + CSW01_02500 0.36 -0.6
497,736 - CSW01_02500 0.37 -1.0
497,736 - CSW01_02500 0.37 +0.4
497,809 + CSW01_02500 0.48 -1.2
497,827 - CSW01_02500 0.50 -3.0
497,827 - CSW01_02500 0.50 -2.8
497,840 + CSW01_02500 0.52 +2.0
497,845 + CSW01_02500 0.53 +0.7
497,850 + CSW01_02500 0.54 -1.7
497,858 - CSW01_02500 0.55 +2.1
497,919 + CSW01_02500 0.64 +1.2
497,926 - CSW01_02500 0.65 +2.1
497,927 - CSW01_02500 0.65 -3.5
497,974 + CSW01_02500 0.71 -0.3
497,982 - CSW01_02500 0.73 +1.0
498,084 + CSW01_02500 0.87 +1.6
498,119 + +0.2
498,119 + +1.7
498,127 - +0.5
498,203 + -0.3
498,211 - +1.6
498,211 - -1.8
498,257 + +0.7
498,290 - +0.5
498,305 - +0.8
498,339 + +1.0
498,360 - CSW01_02505 0.12 -0.8
498,364 + CSW01_02505 0.13 -0.0
498,385 - CSW01_02505 0.17 +1.2
498,424 + CSW01_02505 0.25 +1.6
498,429 + CSW01_02505 0.26 +1.5
498,432 - CSW01_02505 0.27 +0.9
498,432 - CSW01_02505 0.27 +0.2
498,432 - CSW01_02505 0.27 +0.6
498,434 + CSW01_02505 0.27 +0.2
498,434 + CSW01_02505 0.27 -1.6
498,434 + CSW01_02505 0.27 -0.3
498,434 + CSW01_02505 0.27 -0.9
498,434 + CSW01_02505 0.27 +0.4
498,434 + CSW01_02505 0.27 -1.3
498,442 - CSW01_02505 0.29 +0.5
498,442 - CSW01_02505 0.29 +0.9
498,442 - CSW01_02505 0.29 +0.8
498,442 - CSW01_02505 0.29 +0.0
498,442 - CSW01_02505 0.29 +1.8
498,442 - CSW01_02505 0.29 -0.7
498,485 - CSW01_02505 0.38 -3.2
498,524 - CSW01_02505 0.46 +2.2
498,646 + CSW01_02505 0.71 +1.0
498,698 + CSW01_02505 0.81 +0.7
498,698 + CSW01_02505 0.81 -1.4
498,698 + CSW01_02505 0.81 -1.3
498,698 + CSW01_02505 0.81 -0.2
498,698 + CSW01_02505 0.81 +0.9
498,698 + CSW01_02505 0.81 +4.7
498,698 + CSW01_02505 0.81 +0.3
498,698 + CSW01_02505 0.81 -2.5
498,706 - CSW01_02505 0.83 +0.9
498,706 - CSW01_02505 0.83 -2.5
498,706 - CSW01_02505 0.83 +0.1
498,706 - CSW01_02505 0.83 -2.9
498,706 - CSW01_02505 0.83 -0.4
498,706 - CSW01_02505 0.83 +0.1
498,706 - CSW01_02505 0.83 -2.8
498,706 - CSW01_02505 0.83 -2.4
498,706 - CSW01_02505 0.83 -1.1
498,706 - CSW01_02505 0.83 -1.3
498,706 - CSW01_02505 0.83 +0.9
498,706 - CSW01_02505 0.83 -2.0
498,706 - CSW01_02505 0.83 +1.2
498,711 + CSW01_02505 0.84 -1.2
498,711 + CSW01_02505 0.84 +0.5
498,758 + -3.0
498,758 + -0.5
498,760 + +1.3
498,760 + +1.4
498,768 - -0.8
498,768 - +1.2
498,776 - +0.7
498,855 + -3.6

Or see this region's nucleotide sequence