Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02495

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02490 and CSW01_02495 are separated by 13 nucleotidesCSW01_02495 and CSW01_02500 are separated by 137 nucleotidesCSW01_02500 and CSW01_02505 are separated by 127 nucleotides CSW01_02490: CSW01_02490 - glutathione synthetase, at 495,638 to 496,594 _02490 CSW01_02495: CSW01_02495 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 496,608 to 497,339 _02495 CSW01_02500: CSW01_02500 - deoxyribonuclease, at 497,477 to 498,172 _02500 CSW01_02505: CSW01_02505 - SprT family protein, at 498,300 to 498,788 _02505 Position (kb) 496 497 498Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 495.614 kb on - strandat 495.622 kb on - strandat 495.625 kb on + strandat 495.644 kb on - strandat 495.672 kb on + strandat 495.701 kb on + strandat 495.711 kb on + strandat 495.890 kb on - strand, within CSW01_02490at 495.944 kb on - strand, within CSW01_02490at 495.998 kb on + strand, within CSW01_02490at 496.006 kb on - strand, within CSW01_02490at 496.006 kb on - strand, within CSW01_02490at 496.006 kb on - strand, within CSW01_02490at 496.136 kb on - strand, within CSW01_02490at 496.138 kb on - strand, within CSW01_02490at 496.149 kb on + strand, within CSW01_02490at 496.149 kb on + strand, within CSW01_02490at 496.157 kb on - strand, within CSW01_02490at 496.157 kb on - strand, within CSW01_02490at 496.157 kb on - strand, within CSW01_02490at 496.157 kb on - strand, within CSW01_02490at 496.157 kb on - strand, within CSW01_02490at 496.157 kb on - strand, within CSW01_02490at 496.157 kb on - strand, within CSW01_02490at 496.241 kb on + strand, within CSW01_02490at 496.307 kb on + strand, within CSW01_02490at 496.315 kb on - strand, within CSW01_02490at 496.374 kb on - strand, within CSW01_02490at 496.391 kb on - strand, within CSW01_02490at 496.444 kb on + strand, within CSW01_02490at 496.444 kb on + strand, within CSW01_02490at 496.444 kb on + strand, within CSW01_02490at 496.444 kb on + strand, within CSW01_02490at 496.444 kb on + strand, within CSW01_02490at 496.444 kb on + strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.459 kb on - strand, within CSW01_02490at 496.463 kb on + strand, within CSW01_02490at 496.512 kb on + strandat 496.521 kb on - strandat 496.612 kb on - strandat 496.629 kb on + strandat 496.642 kb on - strandat 496.679 kb on - strandat 496.717 kb on - strand, within CSW01_02495at 496.748 kb on - strand, within CSW01_02495at 496.759 kb on - strand, within CSW01_02495at 496.791 kb on + strand, within CSW01_02495at 496.797 kb on + strand, within CSW01_02495at 496.797 kb on + strand, within CSW01_02495at 496.798 kb on + strand, within CSW01_02495at 496.806 kb on - strand, within CSW01_02495at 496.856 kb on - strand, within CSW01_02495at 496.861 kb on - strand, within CSW01_02495at 496.864 kb on - strand, within CSW01_02495at 496.911 kb on - strand, within CSW01_02495at 496.911 kb on - strand, within CSW01_02495at 496.993 kb on + strand, within CSW01_02495at 497.003 kb on - strand, within CSW01_02495at 497.009 kb on + strand, within CSW01_02495at 497.017 kb on - strand, within CSW01_02495at 497.017 kb on - strand, within CSW01_02495at 497.114 kb on + strand, within CSW01_02495at 497.138 kb on + strand, within CSW01_02495at 497.173 kb on + strand, within CSW01_02495at 497.214 kb on + strand, within CSW01_02495at 497.264 kb on - strand, within CSW01_02495at 497.264 kb on - strand, within CSW01_02495at 497.282 kb on + strandat 497.298 kb on - strandat 497.299 kb on - strandat 497.373 kb on - strandat 497.373 kb on - strandat 497.388 kb on + strandat 497.396 kb on - strandat 497.396 kb on - strandat 497.402 kb on - strandat 497.407 kb on + strandat 497.524 kb on - strandat 497.524 kb on - strandat 497.526 kb on + strandat 497.608 kb on - strand, within CSW01_02500at 497.617 kb on + strand, within CSW01_02500at 497.627 kb on + strand, within CSW01_02500at 497.637 kb on + strand, within CSW01_02500at 497.637 kb on + strand, within CSW01_02500at 497.637 kb on + strand, within CSW01_02500at 497.645 kb on - strand, within CSW01_02500at 497.645 kb on - strand, within CSW01_02500at 497.645 kb on - strand, within CSW01_02500at 497.659 kb on + strand, within CSW01_02500at 497.694 kb on - strand, within CSW01_02500at 497.728 kb on + strand, within CSW01_02500at 497.736 kb on - strand, within CSW01_02500at 497.736 kb on - strand, within CSW01_02500at 497.809 kb on + strand, within CSW01_02500at 497.827 kb on - strand, within CSW01_02500at 497.827 kb on - strand, within CSW01_02500at 497.840 kb on + strand, within CSW01_02500at 497.845 kb on + strand, within CSW01_02500at 497.850 kb on + strand, within CSW01_02500at 497.858 kb on - strand, within CSW01_02500at 497.919 kb on + strand, within CSW01_02500at 497.926 kb on - strand, within CSW01_02500at 497.927 kb on - strand, within CSW01_02500at 497.974 kb on + strand, within CSW01_02500at 497.982 kb on - strand, within CSW01_02500at 498.084 kb on + strand, within CSW01_02500at 498.119 kb on + strandat 498.119 kb on + strandat 498.127 kb on - strandat 498.203 kb on + strandat 498.211 kb on - strandat 498.211 kb on - strandat 498.257 kb on + strandat 498.290 kb on - strandat 498.305 kb on - strandat 498.339 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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495,614 - +1.4
495,622 - +1.0
495,625 + +1.4
495,644 - -0.6
495,672 + +1.7
495,701 + -0.4
495,711 + -1.4
495,890 - CSW01_02490 0.26 -1.4
495,944 - CSW01_02490 0.32 -1.3
495,998 + CSW01_02490 0.38 -0.0
496,006 - CSW01_02490 0.38 -3.0
496,006 - CSW01_02490 0.38 -3.5
496,006 - CSW01_02490 0.38 -1.8
496,136 - CSW01_02490 0.52 -0.0
496,138 - CSW01_02490 0.52 -0.5
496,149 + CSW01_02490 0.53 -1.8
496,149 + CSW01_02490 0.53 -3.0
496,157 - CSW01_02490 0.54 -0.0
496,157 - CSW01_02490 0.54 -3.2
496,157 - CSW01_02490 0.54 -2.1
496,157 - CSW01_02490 0.54 -0.7
496,157 - CSW01_02490 0.54 -2.3
496,157 - CSW01_02490 0.54 -3.5
496,157 - CSW01_02490 0.54 -2.2
496,241 + CSW01_02490 0.63 -1.5
496,307 + CSW01_02490 0.70 -1.6
496,315 - CSW01_02490 0.71 +0.3
496,374 - CSW01_02490 0.77 -1.7
496,391 - CSW01_02490 0.79 -1.7
496,444 + CSW01_02490 0.84 +0.3
496,444 + CSW01_02490 0.84 -1.0
496,444 + CSW01_02490 0.84 -2.3
496,444 + CSW01_02490 0.84 -1.0
496,444 + CSW01_02490 0.84 -1.0
496,444 + CSW01_02490 0.84 -2.3
496,452 - CSW01_02490 0.85 -1.5
496,452 - CSW01_02490 0.85 -2.7
496,452 - CSW01_02490 0.85 -1.7
496,452 - CSW01_02490 0.85 -0.2
496,452 - CSW01_02490 0.85 -1.6
496,452 - CSW01_02490 0.85 -2.4
496,452 - CSW01_02490 0.85 -3.2
496,452 - CSW01_02490 0.85 -1.5
496,452 - CSW01_02490 0.85 -2.5
496,452 - CSW01_02490 0.85 -2.3
496,459 - CSW01_02490 0.86 -2.0
496,463 + CSW01_02490 0.86 +0.2
496,512 + -1.8
496,521 - -1.2
496,612 - +1.1
496,629 + -1.6
496,642 - -1.9
496,679 - +0.2
496,717 - CSW01_02495 0.15 -2.2
496,748 - CSW01_02495 0.19 -1.0
496,759 - CSW01_02495 0.21 -1.1
496,791 + CSW01_02495 0.25 -0.7
496,797 + CSW01_02495 0.26 -0.2
496,797 + CSW01_02495 0.26 +0.3
496,798 + CSW01_02495 0.26 +1.2
496,806 - CSW01_02495 0.27 +2.0
496,856 - CSW01_02495 0.34 -1.0
496,861 - CSW01_02495 0.35 +0.4
496,864 - CSW01_02495 0.35 -2.5
496,911 - CSW01_02495 0.41 +0.0
496,911 - CSW01_02495 0.41 -0.2
496,993 + CSW01_02495 0.53 -2.8
497,003 - CSW01_02495 0.54 +0.7
497,009 + CSW01_02495 0.55 -1.8
497,017 - CSW01_02495 0.56 -0.2
497,017 - CSW01_02495 0.56 +1.0
497,114 + CSW01_02495 0.69 +0.5
497,138 + CSW01_02495 0.72 -2.5
497,173 + CSW01_02495 0.77 -0.2
497,214 + CSW01_02495 0.83 -2.9
497,264 - CSW01_02495 0.90 -0.4
497,264 - CSW01_02495 0.90 +2.2
497,282 + -1.2
497,298 - -1.5
497,299 - +0.2
497,373 - -0.9
497,373 - +0.1
497,388 + -2.6
497,396 - -0.1
497,396 - +0.6
497,402 - -3.3
497,407 + -1.6
497,524 - -3.5
497,524 - +0.4
497,526 + +0.3
497,608 - CSW01_02500 0.19 +2.0
497,617 + CSW01_02500 0.20 +0.4
497,627 + CSW01_02500 0.22 +0.0
497,637 + CSW01_02500 0.23 -2.0
497,637 + CSW01_02500 0.23 -2.3
497,637 + CSW01_02500 0.23 +1.3
497,645 - CSW01_02500 0.24 +0.5
497,645 - CSW01_02500 0.24 -1.3
497,645 - CSW01_02500 0.24 +0.0
497,659 + CSW01_02500 0.26 -2.6
497,694 - CSW01_02500 0.31 +0.9
497,728 + CSW01_02500 0.36 -0.6
497,736 - CSW01_02500 0.37 -1.0
497,736 - CSW01_02500 0.37 +0.4
497,809 + CSW01_02500 0.48 -1.2
497,827 - CSW01_02500 0.50 -3.0
497,827 - CSW01_02500 0.50 -2.8
497,840 + CSW01_02500 0.52 +2.0
497,845 + CSW01_02500 0.53 +0.7
497,850 + CSW01_02500 0.54 -1.7
497,858 - CSW01_02500 0.55 +2.1
497,919 + CSW01_02500 0.64 +1.2
497,926 - CSW01_02500 0.65 +2.1
497,927 - CSW01_02500 0.65 -3.5
497,974 + CSW01_02500 0.71 -0.3
497,982 - CSW01_02500 0.73 +1.0
498,084 + CSW01_02500 0.87 +1.6
498,119 + +0.2
498,119 + +1.7
498,127 - +0.5
498,203 + -0.3
498,211 - +1.6
498,211 - -1.8
498,257 + +0.7
498,290 - +0.5
498,305 - +0.8
498,339 + +1.0

Or see this region's nucleotide sequence