Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02270

Experiment: ICP1_phage_235.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02265 and CSW01_02270 are separated by 327 nucleotidesCSW01_02270 and CSW01_02275 are separated by 473 nucleotides CSW01_02265: CSW01_02265 - arginine repressor, at 460,186 to 460,656 _02265 CSW01_02270: CSW01_02270 - malate dehydrogenase, at 460,984 to 461,919 _02270 CSW01_02275: CSW01_02275 - arginine:ornithine antiporter, at 462,393 to 463,799 _02275 Position (kb) 460 461 462Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 460.113 kb on + strandat 460.182 kb on + strandat 460.217 kb on + strandat 460.225 kb on - strandat 460.225 kb on - strandat 460.225 kb on - strandat 460.225 kb on - strandat 460.225 kb on - strandat 460.225 kb on - strandat 460.333 kb on + strand, within CSW01_02265at 460.348 kb on + strand, within CSW01_02265at 460.356 kb on - strand, within CSW01_02265at 460.358 kb on + strand, within CSW01_02265at 460.411 kb on - strand, within CSW01_02265at 460.415 kb on + strand, within CSW01_02265at 460.435 kb on + strand, within CSW01_02265at 460.435 kb on + strand, within CSW01_02265at 460.443 kb on - strand, within CSW01_02265at 460.453 kb on + strand, within CSW01_02265at 460.453 kb on + strand, within CSW01_02265at 460.483 kb on + strand, within CSW01_02265at 460.491 kb on - strand, within CSW01_02265at 460.548 kb on - strand, within CSW01_02265at 460.610 kb on + strandat 460.610 kb on + strandat 460.619 kb on + strandat 460.626 kb on - strandat 460.626 kb on - strandat 460.672 kb on + strandat 460.783 kb on - strandat 460.795 kb on - strandat 460.863 kb on - strandat 460.937 kb on + strandat 460.961 kb on + strandat 461.020 kb on + strandat 461.027 kb on + strandat 461.028 kb on - strandat 461.028 kb on - strandat 461.029 kb on - strandat 461.035 kb on - strandat 461.079 kb on + strand, within CSW01_02270at 461.079 kb on + strand, within CSW01_02270at 461.079 kb on + strand, within CSW01_02270at 461.087 kb on - strand, within CSW01_02270at 461.140 kb on - strand, within CSW01_02270at 461.160 kb on - strand, within CSW01_02270at 461.256 kb on - strand, within CSW01_02270at 461.309 kb on + strand, within CSW01_02270at 461.317 kb on - strand, within CSW01_02270at 461.346 kb on + strand, within CSW01_02270at 461.444 kb on + strand, within CSW01_02270at 461.472 kb on - strand, within CSW01_02270at 461.521 kb on - strand, within CSW01_02270at 461.589 kb on + strand, within CSW01_02270at 461.695 kb on - strand, within CSW01_02270at 461.697 kb on + strand, within CSW01_02270at 461.697 kb on + strand, within CSW01_02270at 461.705 kb on - strand, within CSW01_02270at 461.705 kb on - strand, within CSW01_02270at 461.705 kb on - strand, within CSW01_02270at 461.705 kb on - strand, within CSW01_02270at 461.705 kb on - strand, within CSW01_02270at 461.756 kb on - strand, within CSW01_02270at 461.772 kb on - strand, within CSW01_02270at 461.929 kb on + strandat 461.952 kb on + strandat 462.056 kb on + strandat 462.056 kb on + strandat 462.056 kb on + strandat 462.056 kb on + strandat 462.056 kb on + strandat 462.063 kb on - strandat 462.064 kb on - strandat 462.297 kb on + strandat 462.408 kb on + strandat 462.437 kb on - strandat 462.515 kb on - strandat 462.546 kb on - strand, within CSW01_02275at 462.588 kb on + strand, within CSW01_02275at 462.654 kb on + strand, within CSW01_02275at 462.667 kb on + strand, within CSW01_02275at 462.726 kb on - strand, within CSW01_02275at 462.772 kb on - strand, within CSW01_02275at 462.772 kb on - strand, within CSW01_02275at 462.772 kb on - strand, within CSW01_02275at 462.803 kb on + strand, within CSW01_02275at 462.803 kb on + strand, within CSW01_02275at 462.806 kb on - strand, within CSW01_02275at 462.811 kb on - strand, within CSW01_02275at 462.811 kb on - strand, within CSW01_02275at 462.813 kb on + strand, within CSW01_02275at 462.813 kb on + strand, within CSW01_02275at 462.813 kb on + strand, within CSW01_02275at 462.813 kb on + strand, within CSW01_02275at 462.818 kb on - strand, within CSW01_02275at 462.821 kb on - strand, within CSW01_02275at 462.821 kb on - strand, within CSW01_02275at 462.827 kb on + strand, within CSW01_02275at 462.842 kb on - strand, within CSW01_02275at 462.844 kb on + strand, within CSW01_02275at 462.845 kb on - strand, within CSW01_02275at 462.852 kb on - strand, within CSW01_02275at 462.854 kb on + strand, within CSW01_02275

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep1
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460,113 + -1.5
460,182 + -1.0
460,217 + -0.2
460,225 - +0.4
460,225 - -2.3
460,225 - +1.2
460,225 - +0.6
460,225 - -2.2
460,225 - -1.1
460,333 + CSW01_02265 0.31 -3.1
460,348 + CSW01_02265 0.34 -2.4
460,356 - CSW01_02265 0.36 +1.5
460,358 + CSW01_02265 0.37 +0.7
460,411 - CSW01_02265 0.48 +1.0
460,415 + CSW01_02265 0.49 +0.0
460,435 + CSW01_02265 0.53 -2.3
460,435 + CSW01_02265 0.53 -1.4
460,443 - CSW01_02265 0.55 -3.3
460,453 + CSW01_02265 0.57 -0.3
460,453 + CSW01_02265 0.57 -0.9
460,483 + CSW01_02265 0.63 -1.9
460,491 - CSW01_02265 0.65 +0.3
460,548 - CSW01_02265 0.77 -0.4
460,610 + -2.7
460,610 + -0.7
460,619 + -0.4
460,626 - -0.3
460,626 - -2.7
460,672 + +0.2
460,783 - -1.9
460,795 - -1.0
460,863 - +0.8
460,937 + -3.2
460,961 + -2.0
461,020 + +3.4
461,027 + +1.2
461,028 - -1.8
461,028 - +0.3
461,029 - +1.3
461,035 - -0.6
461,079 + CSW01_02270 0.10 -0.4
461,079 + CSW01_02270 0.10 -1.4
461,079 + CSW01_02270 0.10 -0.6
461,087 - CSW01_02270 0.11 -0.5
461,140 - CSW01_02270 0.17 -0.5
461,160 - CSW01_02270 0.19 -0.4
461,256 - CSW01_02270 0.29 +0.1
461,309 + CSW01_02270 0.35 -1.1
461,317 - CSW01_02270 0.36 +0.2
461,346 + CSW01_02270 0.39 +1.4
461,444 + CSW01_02270 0.49 -0.9
461,472 - CSW01_02270 0.52 -1.9
461,521 - CSW01_02270 0.57 +0.5
461,589 + CSW01_02270 0.65 -0.0
461,695 - CSW01_02270 0.76 -2.3
461,697 + CSW01_02270 0.76 -1.2
461,697 + CSW01_02270 0.76 +0.9
461,705 - CSW01_02270 0.77 -1.8
461,705 - CSW01_02270 0.77 -1.1
461,705 - CSW01_02270 0.77 -1.5
461,705 - CSW01_02270 0.77 -3.9
461,705 - CSW01_02270 0.77 -0.9
461,756 - CSW01_02270 0.82 -1.9
461,772 - CSW01_02270 0.84 +2.2
461,929 + -2.6
461,952 + -2.8
462,056 + -3.9
462,056 + -0.6
462,056 + +1.2
462,056 + +0.6
462,056 + +0.9
462,063 - +0.8
462,064 - +0.0
462,297 + +1.9
462,408 + -2.3
462,437 - +1.0
462,515 - -2.2
462,546 - CSW01_02275 0.11 -1.3
462,588 + CSW01_02275 0.14 +1.1
462,654 + CSW01_02275 0.19 -2.6
462,667 + CSW01_02275 0.19 -0.4
462,726 - CSW01_02275 0.24 +0.2
462,772 - CSW01_02275 0.27 +0.8
462,772 - CSW01_02275 0.27 -0.4
462,772 - CSW01_02275 0.27 +1.4
462,803 + CSW01_02275 0.29 -3.1
462,803 + CSW01_02275 0.29 +0.9
462,806 - CSW01_02275 0.29 +2.5
462,811 - CSW01_02275 0.30 -0.2
462,811 - CSW01_02275 0.30 -1.4
462,813 + CSW01_02275 0.30 +0.5
462,813 + CSW01_02275 0.30 +1.5
462,813 + CSW01_02275 0.30 +0.9
462,813 + CSW01_02275 0.30 +2.1
462,818 - CSW01_02275 0.30 -0.1
462,821 - CSW01_02275 0.30 +0.8
462,821 - CSW01_02275 0.30 +0.3
462,827 + CSW01_02275 0.31 -1.4
462,842 - CSW01_02275 0.32 -2.1
462,844 + CSW01_02275 0.32 +0.4
462,845 - CSW01_02275 0.32 -1.3
462,852 - CSW01_02275 0.33 -0.3
462,854 + CSW01_02275 0.33 +0.4

Or see this region's nucleotide sequence